MD04G1159100.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24713355 .. 24716877
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1159100.v1.1.491

Sequence Viewer

Length: 3132 bp
ATGATGGAGCATTCACGTACCAACTGTAAGCTGGTTTTGTTCAAATTCCTGCATGGGTTCATTCTTTTATGCATGAGCACTTGCCTCGAATCTACAACACTTCGCAACCTTACTCTCCTTGGAAATGAATCTGATCGCTTGGCACTGCTAGACTTCAAGAAAAGAATAACAGTTGATCCTTTCAATGCCATGAGCTCATGGAATCATTCCATCCATTTCTGTAGTTGGGTTGGAGTTTCATGCCACCGTTCCACCAAAAGAGTCTTGATGTTGAACCTGAAATCAAAAAAGTTGGTAGGCTCCATTCCATCTTCTATTGGAAATCTTACTTATCTTACTGGAATCAATTTGAGTGACAACAACTTTCATGGGGAAATTCCTCCAGAAATGGGTCGTCTACAAAGCCTACAATATCTCAACCTTTCTCATAATTCCTTCCATGGGAAAATTCCAACCAATTTGTCGCAATGCACGCAACTAAGATTGCTTGATCTAAAAGCCAATCGGATTATGGGGTCCATTCCGAACCAACTCAGTTCATTGTTGAATTTAAAATATCTATGGCTTTATGGTAATAATCTCACTGGAACCATCCCACCTTGGATAGGAAACTTTTCTTTGTTGAGTGGTCTTCATCTTGGTCGGAACAATTTTCAAGGAAGCATACCCAATGAGCTTGGGCATATAACAGGCTTGGAGGAGTTCTTAGTTCACCTTAATGATCTATCTGGTATGATCCCATCCCCAATCTATAATATTTCTTCCATATCCACTTTTAGTGTTGCTTTCAACCAGTTGCATGGAGAGCTACCACCAAATCTCGGCACTATGCTTCCTAATCTCATAAAATTTCAGTGCGCTATGAACAAATTCAAAGGAAATATTCCTATATCATTGTCAAATGCTTCTAGACTTCAGTTGCTTGATCTTTCTCAAAATGGCTTCTCTGGGACAATCCCTGGTGAGAGTCTAGGAAACTTGCAAAGCTTAGTTTGGCTAAACATTTATGGCAATCAGTTAGGAAATAGAAAAGTTGGTGACTTGAATTTTCTTAGTTTCTTGGCTAATTGCACTAGATTGGAGATTTTGGCTCTTGACAGTAATAATTTTGGAGGAGGAATCCCGGGATCCATAGCCAACTTGTCGACCCAACTTAATATTCTTGGTCTAGGGTTAAATTTGATACATGGAAGGCTCCCTAACGGCATTGGAAACCTTATAAACTTGAATATTCTAGCATTAGACAATAACCATTTGGGTGGTAGTGTCCCGCTTGAAATTGGGAAGCTAAAGAAGTTAGAGCAACTGTATTTGGATGCTAATGAATTTTCTGGGTCAATCCCGTCTTCCCTTGGTAACATGACTTCATTGTTAAACCTTTACATGGAGTTCAATAGGTTTGAGGGCAATATACCTCCAAGTCTGGGAAATTACCAAAACCTATTAGATCTTTCCCTTTCCAGTAACAACCTTACGGGCACCATACCTAAAATGCTTATGGAGCTTTCAACTGTTTCAATTTCTTTAGACCTGTCTGATAATTATTTGACGGGTCTGATGCCCTTTGAGGTGGGTGATTTAGTGCATCTCACAGAGCTAAATGTATCAAGAAACAATTTATTAGGTGAAATCCCGAGCACCCTCGGCAGTTGTACTAGTTTGGAGCGCTTGTCTTTGCAAGGTAATAAGTTTGAAGGAACGATTCCTCAATCTCTTAAGAATTTGAAAGGCTTGGAAAAACTTGATATTTCAAGCAACAACTTGTCTGGGCCGATTCCTGAATTCATAGGCAAGCTTGGTGCTCTCAAGTATCTCAATCTTTCGTATAATGATTTTGAGGGAGAGCTGCCTAAAGATGGTATTTTTGCAAATGCTAGTGGTGTTTCTATTCTTGGAAATCATAGGCTCTGTGGTGGCATCCCACAATTACATCTACCTTCATGCCCCCCAAAAAAACACCATTCATCTCGAGGACTACATTCCTCAAAAGTAGTCATCCCCATAGCCTGTGTATTTGGAATCATAATTGCTCTATCATTCTTCTGTGTCGCTTGTTCAATGCTGAAAAAGTCAAGAGATAGACTTGCAACTTCACGTTCATATAAGGATTGGAAATCAGGTGTCTCCTACTCACAACTCGTTGAATCAACTAACGGATTCTCTGCGGATAATCTTATTGGTTTGGGAAGTTTTGGTTCTGTTTATAAAGGGGTAATTCCTAGTGATGGAACAATAGTTGCTGTTAAGGTACTAAACCTTCAACAACAAGGAGCTTCCAAGAGTTTCATAGATGAATGCAAAGCTTTAAGGAGTATAAGGCACCGTAATCTTCTCAAGATCATAACTGCATGCTCGAGCATTGATAACCAGGGCAAGGACTTCAAAAGTCTAGTTTTCGAGTTCATGGCAAATGGAAGTCTAGACTCAATGTTGTATCCATTATATGAAGAGGAATCTCCAAGCAAAAGAATGAGTTTTATGCAAACATTGAACATCGCCATTGATGTTGCTTCTGCGTTAGATTATCTCCACCACCATTGTGAAACGGCCATTGTTCATTGTGATCTAAAGCCGAGCAACGTACTACTTGATGAAGATATGGTAGCCCATGTTGGGGATTTTGGTTTGGCAAGGTTCCTCTTCGAAACATCAAATGATCCCTCCTTCAGTCAAACAATGTCATCTCAGCTAAAGGGTTCTATAGGCTACATTCCTCCAGAGTACGGCACAGGAGGCCAAGTTTCCATACTTGGAGATGTTTACAGCTATGGGATACTATTGCTGGAAATGTTCACAGGAAAAAGACCTACCGATGACATGTTTAAAGGCGGTCTAAGCATTTACCAATTTGTAGCCATGGCTTTGCCTGACCATGTCATGGACATTGTTTACCATTCAATTATCCTCGACCTCGAAACAGATGGTGATGTCAACAATGACATAGTGCGAGAACGAACTCCATCCAGATGTAACAATGGTGGCTCGGTGAAAGCAAAGAAATTAAAGGAATGCTTGGTTTCAGTGATGCAGATAGGACTCTTTTGTTGTGCAACGTCACCAAGGGAGTGGATGCTGATAGACGCGGTTGTCAGAAAAATGAGCACAATCAGAGACACGTACCTCAAAGTTTAA

Protein Analysis

1044

Amino Acids

114.39

Weight (kDa)

7.32

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 43 - 81 2e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 112 - 170 1.2e-06 Leucine rich repeat
LRR_14 PF23598 152 - 259 6.2e-06 Leucine-rich repeat region
LRR_14 PF23598 354 - 501 1e-09 Leucine-rich repeat region
LRR_8 PF13855 508 - 564 5.9e-06 Leucine rich repeat
LRR_14 PF23598 519 - 609 2.2e-07 Leucine-rich repeat region
LRR_8 PF13855 553 - 612 1.7e-09 Leucine rich repeat
Pkinase PF00069 722 - 938 6.1e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 723 - 940 1.3e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1220, 2205
AasI GACNNNNNNGTC 1 cut(s) 3086
AccB1I GGYRCC 2 cut(s) 1478, 2319
AccB7I CCANNNNNTGG 1 cut(s) 2878
AccI GTMKAC 2 cut(s) 397, 1145
AccII CGCG 1 cut(s) 3083
AciI CCGC 4 cut(s) 1271, 2165, 2829, 3083
AclWI GGATC 5 cut(s) 170, 730, 1122, 1135, 2651
AcoI YGGCCR 1 cut(s) 2547
AcuI CTGAAG 2 cut(s) 899, 2650
AfaI GTAC 6 cut(s) 19, 1654, 2250, 2583, 2723, 3119
AfeI AGCGCT 1 cut(s) 1667
AflII CTTAAG 1 cut(s) 1715
AflIII ACRYGT 2 cut(s) 2817, 3114
AhlI ACTAGT 1 cut(s) 1655
AjnI CCWGG 2 cut(s) 958, 2367
AjuI GAANNNNNNNTTGG 2 cut(s) 1143, 1175
AleI CACNNNNGTG 1 cut(s) 2538
Alw21I GWGCWC 5 cut(s) 80, 197, 1640, 1804, 3104
Alw26I GTCTC 2 cut(s) 2128, 3105
AlwI GGATC 5 cut(s) 170, 730, 1122, 1135, 2651
Ama87I CYCGRG 4 cut(s) 1123, 1633, 1968, 2353
Aor51HI AGCGCT 1 cut(s) 1667
AoxI GGCC 3 cut(s) 1769, 2547, 2734
ApeKI GCWGC 1 cut(s) 1846
Asp700I GAANNNNTTC 2 cut(s) 613, 869
AspLEI GCGC 2 cut(s) 860, 1668
AspS9I GGNCC 2 cut(s) 516, 1769
AsuC2I CCSGG 2 cut(s) 1124, 1125
AsuHPI GGTGA 8 cut(s) 704, 974, 1049, 1586, 1637, 2936, 2998, 3048
AsuII TTCGAA 1 cut(s) 2643
AvaI CYCGRG 4 cut(s) 1123, 1633, 1968, 2353
AvaII GGWCC 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 1481
BamHI GGATCC 1 cut(s) 1127
BanI GGYRCC 2 cut(s) 1478, 2319
BanII GRGCYC 1 cut(s) 197
BarI GAAGNNNNNNTAC 4 cut(s) 1348, 1380, 2241, 2273
BbsI GAAGAC 2 cut(s) 623, 1338
Bbv12I GWGCWC 5 cut(s) 80, 197, 1640, 1804, 3104
BbvI GCAGC 1 cut(s) 1833
BccI CCATC 8 cut(s) 218, 316, 599, 748, 1850, 2219, 2915, 2968
BceAI ACGGC 3 cut(s) 1219, 2562, 2740
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 2 cut(s) 960, 2369
BciVI GTATCC 2 cut(s) 2445, 2766
BcnI CCSGG 2 cut(s) 1124, 1125
BcoDI GTCTC 2 cut(s) 2128, 3105
BcuI ACTAGT 1 cut(s) 1655
BfmI CTRYAG 2 cut(s) 220, 2700
BfoI RGCGCY 1 cut(s) 1669
BfrI CTTAAG 1 cut(s) 1715
BfuI GTATCC 2 cut(s) 2445, 2766
BglII AGATCT 1 cut(s) 1447
BisI GCNGC 1 cut(s) 1847
BlsI GCNGC 1 cut(s) 1848
Bme1390I CCNGG 4 cut(s) 960, 1124, 1125, 2369
Bme18I GGWCC 1 cut(s) 516
BmeT110I CYCGRG 4 cut(s) 1123, 1633, 1968, 2353
BmgT120I GGNCC 2 cut(s) 516, 1769
BmiI GGNNCC 8 cut(s) 301, 517, 589, 1129, 1196, 1480, 2321, 2636
BmrFI CCNGG 4 cut(s) 960, 1124, 1125, 2369
BmsI GCATC 6 cut(s) 1306, 1548, 1594, 1926, 3015, 3060
BpiI GAAGAC 2 cut(s) 623, 1338
BpmI CTGGAG 2 cut(s) 366, 2700
Bpu14I TTCGAA 1 cut(s) 2643
BpuEI CTTGAG 2 cut(s) 1790, 2318
BpuMI CCSGG 2 cut(s) 1124, 1125
BsaAI YACGTR 2 cut(s) 17, 3117
BsaXI ACNNNNNCTCC 4 cut(s) 1655, 1685, 2724, 2754
Bse1I ACTGG 4 cut(s) 343, 589, 793, 1461
Bse3DI GCAATG 1 cut(s) 473
BseBI CCWGG 2 cut(s) 960, 2369
BseGI GGATG 8 cut(s) 210, 591, 740, 1321, 1917, 1995, 2960, 3075
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 2 cut(s) 547, 2699
BseNI ACTGG 4 cut(s) 343, 589, 793, 1461
BseRI GAGGAG 2 cut(s) 713, 1128
BseSI GKGCMC 1 cut(s) 1481
BseXI GCAGC 1 cut(s) 1833
Bsh1236I CGCG 1 cut(s) 3083
BshFI GGCC 3 cut(s) 1771, 2549, 2736
BshNI GGYRCC 2 cut(s) 1478, 2319
BsiHKAI GWGCWC 5 cut(s) 80, 197, 1640, 1804, 3104
BsiHKCI CYCGRG 4 cut(s) 1123, 1633, 1968, 2353
BsiSI CCGG 1 cut(s) 1124
BslFI GGGAC 2 cut(s) 964, 1253
BsmAI GTCTC 2 cut(s) 2128, 3105
BsmFI GGGAC 2 cut(s) 964, 1253
BsmI GAATGC 3 cut(s) 10, 2300, 3014
BsnI GGCC 3 cut(s) 1771, 2549, 2736
BsoBI CYCGRG 4 cut(s) 1123, 1633, 1968, 2353
Bsp119I TTCGAA 1 cut(s) 2643
Bsp1286I GDGCHC 6 cut(s) 80, 197, 1481, 1640, 1804, 3104
Bsp19I CCATGG 2 cut(s) 439, 2856
BspACI CCGC 4 cut(s) 1271, 2165, 2829, 3083
BspANI GGCC 3 cut(s) 1771, 2549, 2736
BspCNI CTCAG 2 cut(s) 546, 2698
BspFNI CGCG 1 cut(s) 3083
BspLI GGNNCC 8 cut(s) 301, 517, 589, 1129, 1196, 1480, 2321, 2636
BspPI GGATC 5 cut(s) 170, 730, 1122, 1135, 2651
BspT104I TTCGAA 1 cut(s) 2643
BspT107I GGYRCC 2 cut(s) 1478, 2319
BspTI CTTAAG 1 cut(s) 1715
BsrDI GCAATG 1 cut(s) 473
BsrI ACTGG 4 cut(s) 343, 589, 793, 1461
BssT1I CCWWGG 6 cut(s) 118, 439, 599, 1351, 2856, 3059
Bst2UI CCWGG 2 cut(s) 960, 2369
Bst4CI ACNGT 7 cut(s) 26, 172, 248, 1100, 1308, 1513, 2324
Bst6I CTCTTC 2 cut(s) 2442, 2645
BstAFI CTTAAG 1 cut(s) 1715
BstBAI YACGTR 2 cut(s) 17, 3117
BstBI TTCGAA 1 cut(s) 2643
BstC8I GCNNGC 3 cut(s) 473, 1793, 2350
BstDEI CTNAG 7 cut(s) 479, 533, 706, 988, 1052, 2685, 2834
BstDSI CCRYGG 2 cut(s) 439, 2856
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 8 cut(s) 210, 591, 740, 1321, 1917, 1995, 2960, 3075
BstFNI CGCG 1 cut(s) 3083
BstH2I RGCGCY 1 cut(s) 1669
BstHHI GCGC 2 cut(s) 860, 1668
BstMAI GTCTC 2 cut(s) 2128, 3105
BstMWI GCNNNNNNNGC 6 cut(s) 472, 805, 1501, 1644, 2733, 2835
BstNI CCWGG 2 cut(s) 960, 2369
BstNSI RCATGY 2 cut(s) 2352, 2821
BstSCI CCNGG 4 cut(s) 958, 1122, 1123, 2367
BstSFI CTRYAG 2 cut(s) 220, 2700
BstSLI GKGCMC 1 cut(s) 1481
BstUI CGCG 1 cut(s) 3083
BstV1I GCAGC 1 cut(s) 1833
BstV2I GAAGAC 2 cut(s) 623, 1338
BstX2I RGATCY 2 cut(s) 1127, 1447
BstXI CCANNNNNNTGG 3 cut(s) 800, 1259, 3066
BstYI RGATCY 2 cut(s) 1127, 1447
BsuI GTATCC 2 cut(s) 2445, 2766
BsuRI GGCC 3 cut(s) 1771, 2549, 2736
BtgI CCRYGG 2 cut(s) 439, 2856
BtgZI GCGATG 1 cut(s) 2479
BtsCI GGATG 8 cut(s) 210, 591, 740, 1321, 1917, 1995, 2960, 3075
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 4 cut(s) 143, 582, 860, 3027
Cac8I GCNNGC 3 cut(s) 473, 1793, 2350
CfoI GCGC 2 cut(s) 860, 1668
Cfr13I GGNCC 2 cut(s) 516, 1769
Cfr9I CCCGGG 1 cut(s) 1123
CseI GACGC 1 cut(s) 3089
Csp6I GTAC 6 cut(s) 18, 1653, 2249, 2582, 2722, 3118
CspCI CAANNNNNGTGG 2 cut(s) 2519, 2554
CviQI GTAC 6 cut(s) 18, 1653, 2249, 2582, 2722, 3118
DdeI CTNAG 7 cut(s) 479, 533, 706, 988, 1052, 2685, 2834
DraI TTTAAA 2 cut(s) 552, 2824
DrdI GACNNNNNNGTC 1 cut(s) 3086
DseDI GACNNNNNNGTC 1 cut(s) 3086
EaeI YGGCCR 1 cut(s) 2547
Eam1104I CTCTTC 2 cut(s) 2442, 2645
EarI CTCTTC 2 cut(s) 2442, 2645
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 6 cut(s) 118, 439, 599, 1351, 2856, 3059
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 516
Eco47III AGCGCT 1 cut(s) 1667
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 899, 2650
Eco88I CYCGRG 4 cut(s) 1123, 1633, 1968, 2353
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 1781
EcoRII CCWGG 2 cut(s) 958, 2367
EcoT14I CCWWGG 6 cut(s) 118, 439, 599, 1351, 2856, 3059
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 6 cut(s) 118, 439, 599, 1351, 2856, 3059
FalI AAGNNNNNCTT 2 cut(s) 2996, 3028
FaqI GGGAC 2 cut(s) 964, 1253
FauI CCCGC 1 cut(s) 1278
FblI GTMKAC 2 cut(s) 397, 1145
Fnu4HI GCNGC 1 cut(s) 1847
FokI GGATG 8 cut(s) 197, 578, 727, 1328, 1904, 1982, 2947, 3082
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 1847
GlaI GCGC 2 cut(s) 859, 1667
GluI GCNGC 1 cut(s) 1847
GsuI CTGGAG 2 cut(s) 366, 2700
HaeII RGCGCY 1 cut(s) 1669
HaeIII GGCC 3 cut(s) 1771, 2549, 2736
HapII CCGG 1 cut(s) 1124
HgaI GACGC 1 cut(s) 3089
HhaI GCGC 2 cut(s) 860, 1668
Hin6I GCGC 2 cut(s) 858, 1666
HinP1I GCGC 2 cut(s) 858, 1666
HincII GTYRAC 2 cut(s) 1146, 2932
HindII GTYRAC 2 cut(s) 1146, 2932
HindIII AAGCTT 3 cut(s) 985, 1793, 2301
HpaII CCGG 1 cut(s) 1124
HphI GGTGA 8 cut(s) 704, 974, 1049, 1586, 1637, 2936, 2998, 3048
Hpy166II GTNNAC 7 cut(s) 398, 712, 1146, 2761, 2793, 2890, 2932
Hpy188I TCNGA 8 cut(s) 133, 507, 525, 645, 1537, 1557, 3092, 3110
Hpy8I GTNNAC 7 cut(s) 398, 712, 1146, 2761, 2793, 2890, 2932
HpyAV CCTTC 6 cut(s) 445, 1185, 1688, 1947, 2267, 2674
HpyCH4III ACNGT 7 cut(s) 26, 172, 248, 1100, 1308, 1513, 2324
HpyCH4IV ACGT 5 cut(s) 16, 2095, 2580, 3053, 3116
HpyF10VI GCNNNNNNNGC 6 cut(s) 472, 805, 1501, 1644, 2733, 2835
HpyF3I CTNAG 7 cut(s) 479, 533, 706, 988, 1052, 2685, 2834
HpySE526I ACGT 5 cut(s) 16, 2095, 2580, 3053, 3116
HspAI GCGC 2 cut(s) 858, 1666
LmnI GCTCC 6 cut(s) 7, 305, 1200, 1501, 1663, 2270
Lsp1109I GCAGC 1 cut(s) 1833
LweI GCATC 6 cut(s) 1306, 1548, 1594, 1926, 3015, 3060
MaeII ACGT 5 cut(s) 16, 2095, 2580, 3053, 3116
MaeIII GTNAC 6 cut(s) 353, 1037, 1355, 1463, 2969, 3054
MboII GAAGA 9 cut(s) 303, 623, 753, 1338, 2032, 2321, 2459, 2606, 2632
MflI RGATCY 2 cut(s) 1127, 1447
MhlI GDGCHC 6 cut(s) 80, 197, 1481, 1640, 1804, 3104
MlyI GAGTC 4 cut(s) 270, 976, 2417, 3030
MmeI TCCRAC 3 cut(s) 211, 476, 623
Mph1103I ATGCAT 1 cut(s) 74
MroXI GAANNNNTTC 2 cut(s) 613, 869
MslI CAYNNNNRTG 4 cut(s) 717, 1257, 2538, 2965
MspCI CTTAAG 1 cut(s) 1715
MspI CCGG 1 cut(s) 1124
MspR9I CCNGG 4 cut(s) 960, 1124, 1125, 2369
Mva1269I GAATGC 3 cut(s) 10, 2300, 3014
MvaI CCWGG 2 cut(s) 960, 2369
MvnI CGCG 1 cut(s) 3083
MwoI GCNNNNNNNGC 6 cut(s) 472, 805, 1501, 1644, 2733, 2835
NciI CCSGG 2 cut(s) 1124, 1125
NcoI CCATGG 2 cut(s) 439, 2856
NlaIV GGNNCC 8 cut(s) 301, 517, 589, 1129, 1196, 1480, 2321, 2636
NmeAIII GCCGAG 3 cut(s) 801, 1623, 2598
NmuCI GTSAC 3 cut(s) 353, 1037, 3054
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 2 cut(s) 2352, 2821
NspV TTCGAA 1 cut(s) 2643
OliI CACNNNNGTG 1 cut(s) 2538
PaeI GCATGC 1 cut(s) 2352
PaeR7I CTCGAG 2 cut(s) 1968, 2353
PciI ACATGT 1 cut(s) 2817
PctI GAATGC 3 cut(s) 10, 2300, 3014
PdmI GAANNNNTTC 2 cut(s) 613, 869
PflFI GACNNNGTC 1 cut(s) 2873
PflMI CCANNNNNTGG 1 cut(s) 2878
PkrI GCNGC 1 cut(s) 1848
PleI GAGTC 4 cut(s) 269, 975, 2417, 3030
PpsI GAGTC 4 cut(s) 269, 975, 2417, 3030
Ppu21I YACGTR 2 cut(s) 17, 3117
PscI ACATGT 1 cut(s) 2817
PsiI TTATAA 2 cut(s) 1220, 2205
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 958, 2367
PspGI CCWGG 2 cut(s) 958, 2367
PspN4I GGNNCC 8 cut(s) 301, 517, 589, 1129, 1196, 1480, 2321, 2636
PspPI GGNCC 2 cut(s) 516, 1769
PspXI VCTCGAGB 1 cut(s) 2353
PsuI RGATCY 2 cut(s) 1127, 1447
PsyI GACNNNGTC 1 cut(s) 2873
RsaI GTAC 6 cut(s) 19, 1654, 2250, 2583, 2723, 3119
RsaNI GTAC 6 cut(s) 18, 1653, 2249, 2582, 2722, 3118
RseI CAYNNNNRTG 4 cut(s) 717, 1257, 2538, 2965
SacI GAGCTC 1 cut(s) 197
SalI GTCGAC 1 cut(s) 1144
SatI GCNGC 1 cut(s) 1847
Sau96I GGNCC 2 cut(s) 516, 1769
SchI GAGTC 4 cut(s) 270, 976, 2417, 3030
ScrFI CCNGG 4 cut(s) 960, 1124, 1125, 2369
SduI GDGCHC 6 cut(s) 80, 197, 1481, 1640, 1804, 3104
SfaNI GCATC 6 cut(s) 1306, 1548, 1594, 1926, 3015, 3060
SfcI CTRYAG 2 cut(s) 220, 2700
Sfr274I CTCGAG 2 cut(s) 1968, 2353
SfuI TTCGAA 1 cut(s) 2643
SinI GGWCC 1 cut(s) 516
SlaI CTCGAG 2 cut(s) 1968, 2353
SmaI CCCGGG 1 cut(s) 1125
SmiMI CAYNNNNRTG 4 cut(s) 717, 1257, 2538, 2965
SmlI CTYRAG 5 cut(s) 1715, 1805, 1968, 2333, 2353
SmoI CTYRAG 5 cut(s) 1715, 1805, 1968, 2333, 2353
SpeI ACTAGT 1 cut(s) 1655
SphI GCATGC 1 cut(s) 2352
SsiI CCGC 4 cut(s) 1271, 2165, 2829, 3083
SspI AATATT 4 cut(s) 757, 883, 1159, 1231
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 958, 1122, 1123, 2367
StyI CCWWGG 6 cut(s) 118, 439, 599, 1351, 2856, 3059
TaaI ACNGT 7 cut(s) 26, 172, 248, 1100, 1308, 1513, 2324
TaiI ACGT 5 cut(s) 19, 2098, 2583, 3056, 3119
TaqI TCGA 8 cut(s) 87, 1145, 1969, 2354, 2397, 2643, 2907, 2913
TatI WGTACW 1 cut(s) 1652
TscAI CASTG 4 cut(s) 150, 589, 860, 3027
TseFI GTSAC 3 cut(s) 353, 1037, 3054
TseI GCWGC 1 cut(s) 1846
Tsp45I GTSAC 3 cut(s) 353, 1037, 3054
TspGWI ACGGA 1 cut(s) 2169
TspMI CCCGGG 1 cut(s) 1123
TspRI CASTG 4 cut(s) 150, 589, 860, 3027
Tth111I GACNNNGTC 1 cut(s) 2873
Van91I CCANNNNNTGG 1 cut(s) 2878
Vha464I CTTAAG 1 cut(s) 1715
VpaK11BI GGWCC 1 cut(s) 516
XagI CCTNNNNNAGG 1 cut(s) 603
XbaI TCTAGA 2 cut(s) 908, 2419
XceI RCATGY 2 cut(s) 2352, 2821
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 508
XhoI CTCGAG 2 cut(s) 1968, 2353
XmaI CCCGGG 1 cut(s) 1123
XmiI GTMKAC 2 cut(s) 397, 1145
XmnI GAANNNNTTC 2 cut(s) 613, 869
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.