pycom04g03530

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
3151307 .. 3152141
835 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03530.1

Sequence Viewer

Length: 723 bp
ATGGCACATTCTTATAAAGATTATAAATCGGGTGTGTCTTACCCTGAACTTCTCGAATCAACGAATGGGTTCTCTGTGGACAATTTGATTGGTTCGGGAAGTTTTGATTTTGTTTACAAAGGGGTACTCCCTAGCGATAGAATGATAGTTGCTATTAAGGTATTAAACCTTCATCAACAAGGAGCGTATGAGAGTTTCTTTGATGAATGCAAAGCTTTAAGAAGTATAAGGCATCAAAATCTTCTCGAGATCATAACCGCTTGCTCAAGCATGGATAATCAAGGTAACGACTTCAAAGGCCTAGTTTTCAAGTTCATGAAAAACGAAAGCCTAGATTCATGGTTGCATCCAAAAGACGAGCAATCTCAAATCAAGAGATTGAGCACTGTGGAGAAATTGAATATTGCCATCGATGTTGCTTCTATATCTCCACCATCCTACAGTGTTGCCTGCCATGTCATGAACGTAGTTGACCCTTCTTTGCTCCTCGAAACAGATGGTGATGGTGACAATTATGATGAAACATACGGTAATAACATACAAGAAAGACCAATTACAAGATATTGTGACCGTGCTCCACTCCATGCAACAAGATTTGAGGAATGTTTGGTTTCAGTAATGCAGATAGGAATTTCTTGCTCTGCAATGTCGCCTAGAGAGCGGATGCCTATTGCTGTCGTTGTCAACCAAATGAAGACAATTAGAGACGATGGGAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

241

Amino Acids

26.96

Weight (kDa)

5.26

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 25 - 120 2e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 26 - 140 1.9e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 15, 24
AccBSI CCGCTC 1 cut(s) 661
AciI CCGC 2 cut(s) 258, 661
AcsI RAATTY 1 cut(s) 630
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 3 cut(s) 295, 310, 400
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 2 cut(s) 386, 577
Alw26I GTCTC 1 cut(s) 699
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 630
Asp700I GAANNNNTTC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 512, 518
AvaI CYCGRG 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 386, 577
BccI CCATC 5 cut(s) 416, 442, 491, 497, 704
BcoDI GTCTC 1 cut(s) 699
BfaI CTAG 4 cut(s) 132, 302, 332, 654
BfmI CTRYAG 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 245
BmsI GCATC 3 cut(s) 241, 355, 654
BpiI GAAGAC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 651
BseCI ATCGAT 1 cut(s) 411
BseGI GGATG 3 cut(s) 346, 434, 669
BseMI GCAATG 1 cut(s) 651
BseRI GAGGAG 1 cut(s) 476
BshFI GGCC 1 cut(s) 300
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 386, 577
BsiHKCI CYCGRG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 699
BsmBI CGTCTC 1 cut(s) 699
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 386, 577
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 2 cut(s) 258, 661
BspANI GGCC 1 cut(s) 300
BspDI ATCGAT 1 cut(s) 411
BspHI TCATGA 2 cut(s) 315, 459
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 651
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 4 cut(s) 388, 443, 530, 572
BstC8I GCNNGC 2 cut(s) 262, 451
BstF5I GGATG 3 cut(s) 346, 434, 669
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 658
BstSFI CTRYAG 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 701
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 411
BtsCI GGATG 3 cut(s) 346, 434, 669
BtsIMutI CAGTG 2 cut(s) 384, 448
Cac8I GCNNGC 2 cut(s) 262, 451
CciI TCATGA 2 cut(s) 315, 459
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 125
CviAII CATG 6 cut(s) 271, 316, 339, 455, 460, 584
CviJI RGCY 3 cut(s) 215, 300, 330
CviKI_1 RGCY 3 cut(s) 215, 300, 330
CviQI GTAC 1 cut(s) 125
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 699
FaeI CATG 6 cut(s) 274, 319, 342, 458, 463, 587
FatI CATG 6 cut(s) 270, 315, 338, 454, 459, 583
FokI GGATG 3 cut(s) 333, 421, 676
FspBI CTAG 4 cut(s) 132, 302, 332, 654
HaeIII GGCC 1 cut(s) 300
Hin1II CATG 6 cut(s) 274, 319, 342, 458, 463, 587
HincII GTYRAC 2 cut(s) 472, 685
HindII GTYRAC 2 cut(s) 472, 685
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 56, 335
HphI GGTGA 2 cut(s) 512, 518
Hpy166II GTNNAC 4 cut(s) 79, 115, 472, 685
Hpy188III TCNNGA 7 cut(s) 53, 96, 245, 247, 316, 373, 460
Hpy8I GTNNAC 4 cut(s) 79, 115, 472, 685
HpyAV CCTTC 2 cut(s) 179, 486
HpyCH4III ACNGT 4 cut(s) 388, 443, 530, 572
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 5 cut(s) 210, 346, 587, 622, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 658
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 6 cut(s) 274, 319, 342, 458, 463, 587
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 3 cut(s) 182, 489, 580
LpnPI CCDG 2 cut(s) 57, 463
LweI GCATC 3 cut(s) 241, 355, 654
MaeI CTAG 4 cut(s) 132, 302, 332, 654
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 3 cut(s) 284, 506, 566
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 661
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 233, 706
MhlI GDGCHC 2 cut(s) 386, 577
MluCI AATT 6 cut(s) 82, 395, 511, 552, 630, 699
MnlI CCTC 2 cut(s) 497, 592
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 3 cut(s) 156, 164, 218
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 658
NdeII GATC 1 cut(s) 249
NlaIII CATG 6 cut(s) 274, 319, 342, 458, 463, 587
NmuCI GTSAC 2 cut(s) 506, 566
PaeR7I CTCGAG 1 cut(s) 245
PagI TCATGA 2 cut(s) 315, 459
PceI AGGCCT 1 cut(s) 300
PctI GAATGC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 56, 335
PsiI TTATAA 2 cut(s) 15, 24
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 156, 164, 218
Sau3AI GATC 1 cut(s) 249
SduI GDGCHC 2 cut(s) 386, 577
SetI ASST 5 cut(s) 162, 171, 217, 286, 468
SfaNI GCATC 3 cut(s) 241, 355, 654
SfcI CTRYAG 1 cut(s) 439
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 245, 265
SmoI CTYRAG 2 cut(s) 245, 265
Sse9I AATT 6 cut(s) 82, 395, 511, 552, 630, 699
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 2 cut(s) 258, 661
SspI AATATT 1 cut(s) 403
SspMI CTAG 4 cut(s) 132, 302, 332, 654
StuI AGGCCT 1 cut(s) 300
TaaI ACNGT 4 cut(s) 388, 443, 530, 572
TaiI ACGT 1 cut(s) 468
TaqI TCGA 4 cut(s) 54, 246, 411, 489
TasI AATT 6 cut(s) 82, 395, 511, 552, 630, 699
TfiI GAWTC 2 cut(s) 56, 335
Tru1I TTAA 3 cut(s) 156, 164, 218
Tru9I TTAA 3 cut(s) 156, 164, 218
TscAI CASTG 2 cut(s) 391, 448
TseFI GTSAC 2 cut(s) 506, 566
Tsp45I GTSAC 2 cut(s) 506, 566
TspDTI ATGAA 8 cut(s) 161, 219, 304, 327, 332, 476, 534, 707
TspRI CASTG 2 cut(s) 391, 448
XapI RAATTY 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 4 cut(s) 132, 302, 332, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.