Rh3AG122100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
10478268 .. 10478895
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG122100.1

Sequence Viewer

Length: 492 bp
ATGTCAGCTAGGCTAAAGGGTTCCATAGGCTACATTCCTCCTGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCAACGGACGAAATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGCCATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAACAGATGAGGATAAGGATGATGATGATGATGACAAATACAGCAATGATAAACAAGAAAGGCCAATAGCCGGGTATCAAGATATAGGCCTAGTGAAAGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATGCAGATTGGTCTCTCATGCTCCACAGTATCACCAAGTGAGCGCATTCCGATGAATGTGGTTGTGAACAAGATGACTGAAATTAGAGATTCCTATCTCAAATTGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

4.68

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 401
AfiI CCNNNNNNNGG 3 cut(s) 47, 202, 302
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 228
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 8, 90
AluI AGCT 2 cut(s) 8, 90
Alw26I GTCTC 1 cut(s) 380
AoxI GGCC 3 cut(s) 128, 293, 319
AspLEI GCGC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 158, 387, 478
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 3 cut(s) 9, 107, 323
BfmI CTRYAG 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 230, 304
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 230, 304
BmsI GCATC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 202, 302
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 2 cut(s) 221, 283
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 62, 256
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 47, 202, 302
BseMI GCAATG 2 cut(s) 221, 283
BseNI ACTGG 1 cut(s) 169
BshFI GGCC 3 cut(s) 130, 295, 321
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 47, 202, 302
BsmAI GTCTC 1 cut(s) 380
BsmI GAATGC 3 cut(s) 162, 353, 408
BsnI GGCC 3 cut(s) 130, 295, 321
Bso31I GGTCTC 1 cut(s) 380
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 3 cut(s) 130, 295, 321
BspLI GGNNCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 221, 283
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 197, 391
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 62, 256
BstHHI GCGC 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 228, 302
BstSFI CTRYAG 1 cut(s) 85
BsuRI GGCC 3 cut(s) 130, 295, 321
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 62, 256
BtsIMutI CAGTG 1 cut(s) 366
CfoI GCGC 1 cut(s) 408
CviAII CATG 4 cut(s) 52, 181, 202, 381
DdeI CTNAG 1 cut(s) 158
DraIII CACNNNGTG 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 4 cut(s) 55, 184, 205, 384
FatI CATG 4 cut(s) 51, 180, 201, 380
FokI GGATG 2 cut(s) 69, 263
FspBI CTAG 3 cut(s) 9, 107, 323
GlaI GCGC 1 cut(s) 407
HaeIII GGCC 3 cut(s) 130, 295, 321
HapII CCGG 1 cut(s) 303
HhaI GCGC 1 cut(s) 408
Hin1II CATG 4 cut(s) 55, 184, 205, 384
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 97, 452
HpaII CCGG 1 cut(s) 303
HphI GGTGA 3 cut(s) 158, 387, 478
Hpy166II GTNNAC 4 cut(s) 117, 174, 214, 430
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 2 cut(s) 41, 311
Hpy8I GTNNAC 4 cut(s) 117, 174, 214, 430
HpyCH4III ACNGT 2 cut(s) 197, 391
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 4 cut(s) 55, 184, 205, 384
HspAI GCGC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 231, 389
LpnPI CCDG 8 cut(s) 54, 59, 105, 182, 204, 215, 242, 316
LweI GCATC 1 cut(s) 354
MaeI CTAG 3 cut(s) 9, 107, 323
MaeIII GTNAC 1 cut(s) 484
MboII GAAGA 1 cut(s) 348
MluCI AATT 2 cut(s) 444, 464
MnlI CCTC 3 cut(s) 48, 235, 337
MslI CAYNNNNRTG 2 cut(s) 179, 413
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 230, 304
Mva1269I GAATGC 3 cut(s) 162, 353, 408
MvaI CCWGG 1 cut(s) 230
NciI CCSGG 1 cut(s) 304
NcoI CCATGG 1 cut(s) 180
NlaIII CATG 4 cut(s) 55, 184, 205, 384
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 484
PceI AGGCCT 1 cut(s) 321
PctI GAATGC 3 cut(s) 162, 353, 408
PfeI GAWTC 2 cut(s) 97, 452
PflFI GACNNNGTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 197
RseI CAYNNNNRTG 2 cut(s) 179, 413
ScrFI CCNGG 2 cut(s) 230, 304
SetI ASST 3 cut(s) 10, 92, 491
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 179, 413
Sse9I AATT 2 cut(s) 444, 464
SseBI AGGCCT 1 cut(s) 321
SspMI CTAG 3 cut(s) 9, 107, 323
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 228, 302
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 197, 391
TasI AATT 2 cut(s) 444, 464
TfiI GAWTC 2 cut(s) 97, 452
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 2 cut(s) 210, 431
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 366
Tth111I GACNNNGTC 1 cut(s) 197
XspI CTAG 3 cut(s) 9, 107, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.