Rh3BG126900

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000262
Physical Location & Seq
Reverse (-)
10502469 .. 10503090
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG126900.1

Sequence Viewer

Length: 486 bp
ATGTCAGCTAGGCTAAAGGGTTCCATAGGCTACATTCCTCCTGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCAACGGACGAAATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGCCATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAACAGATGAGGATAAAGATGATGATGACAAATACAGCAATGATATACAAGAAAGGCCAATAGCCGGGTATCAAGATATAGGCCTAGTGAAAGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATGCAGATTGGTCTCTCATGCTCCACAGTATCACCAAGTGAGCGCATTCTCATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATTGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

4.8

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 395
AfiI CCNNNNNNNGG 3 cut(s) 47, 202, 296
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 228
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 8, 90
AluI AGCT 2 cut(s) 8, 90
Alw26I GTCTC 1 cut(s) 374
AoxI GGCC 3 cut(s) 128, 287, 313
AspLEI GCGC 1 cut(s) 402
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 3 cut(s) 158, 381, 472
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 3 cut(s) 9, 107, 317
BfmI CTRYAG 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 230, 298
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 230, 298
BmsI GCATC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 202, 296
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 2 cut(s) 221, 277
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 3 cut(s) 47, 202, 296
BseMI GCAATG 2 cut(s) 221, 277
BseNI ACTGG 1 cut(s) 169
BshFI GGCC 3 cut(s) 130, 289, 315
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 47, 202, 296
BsmAI GTCTC 1 cut(s) 374
BsmI GAATGC 3 cut(s) 162, 347, 402
BsnI GGCC 3 cut(s) 130, 289, 315
Bso31I GGTCTC 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 3 cut(s) 130, 289, 315
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 221, 277
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 197, 385
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 402
BstMAI GTCTC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 228, 296
BstSFI CTRYAG 1 cut(s) 85
BsuRI GGCC 3 cut(s) 130, 289, 315
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 360
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 402
CviAII CATG 5 cut(s) 52, 181, 202, 375, 409
DdeI CTNAG 1 cut(s) 158
DraIII CACNNNGTG 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 5 cut(s) 55, 184, 205, 378, 412
FatI CATG 5 cut(s) 51, 180, 201, 374, 408
FokI GGATG 1 cut(s) 69
FspBI CTAG 3 cut(s) 9, 107, 317
GlaI GCGC 1 cut(s) 401
HaeIII GGCC 3 cut(s) 130, 289, 315
HapII CCGG 1 cut(s) 297
HhaI GCGC 1 cut(s) 402
Hin1II CATG 5 cut(s) 55, 184, 205, 378, 412
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 97, 446
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 158, 381, 472
Hpy166II GTNNAC 4 cut(s) 117, 174, 214, 424
Hpy188III TCNNGA 3 cut(s) 41, 305, 409
Hpy8I GTNNAC 4 cut(s) 117, 174, 214, 424
HpyCH4III ACNGT 2 cut(s) 197, 385
HpyCH4V TGCA 2 cut(s) 361, 437
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 5 cut(s) 55, 184, 205, 378, 412
HspAI GCGC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 231, 383
LpnPI CCDG 8 cut(s) 54, 59, 105, 182, 204, 215, 242, 310
LweI GCATC 1 cut(s) 348
MaeI CTAG 3 cut(s) 9, 107, 317
MaeIII GTNAC 1 cut(s) 478
MboII GAAGA 1 cut(s) 342
MluCI AATT 2 cut(s) 438, 458
MnlI CCTC 3 cut(s) 48, 235, 331
MslI CAYNNNNRTG 3 cut(s) 179, 407, 413
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 230, 298
Mva1269I GAATGC 3 cut(s) 162, 347, 402
MvaI CCWGG 1 cut(s) 230
NciI CCSGG 1 cut(s) 298
NcoI CCATGG 1 cut(s) 180
NlaIII CATG 5 cut(s) 55, 184, 205, 378, 412
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 478
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 1 cut(s) 315
PctI GAATGC 3 cut(s) 162, 347, 402
PfeI GAWTC 2 cut(s) 97, 446
PflFI GACNNNGTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 197
RseI CAYNNNNRTG 3 cut(s) 179, 407, 413
ScrFI CCNGG 2 cut(s) 230, 298
SetI ASST 3 cut(s) 10, 92, 485
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 179, 407, 413
Sse9I AATT 2 cut(s) 438, 458
SseBI AGGCCT 1 cut(s) 315
SspMI CTAG 3 cut(s) 9, 107, 317
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 228, 296
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 197, 385
TasI AATT 2 cut(s) 438, 458
TfiI GAWTC 2 cut(s) 97, 446
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 2 cut(s) 210, 425
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 360
Tth111I GACNNNGTC 1 cut(s) 197
XspI CTAG 3 cut(s) 9, 107, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.