MD12G1130700.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
20573608 .. 20575049
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1130700.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGGATCTTTCGCGCAATAACTTATCCGGGCAGATTCCTGAATTTCTAAGCATGTTTAGATTTCTTAGGCATCTCAACCTTTCATATAACAATTTTGAGGGTAAAATGCCTGAAGAAGGAATCTTTTCAAATGCAACTGGTCTATCAATGCTTGGAAATCCTAAGCTCTGTGGTGGTAGCTCGAAATTACATTTACCTGCATGCCCCAACATAAAGCCTCATTCATCTCGAGGACTACTTGCCCGAAATGTAGTCATCCCTATAGCTTGTGCACTTGCCTTCATAATTGCTATGTCTTGCTTCATTGTTGCCTGCTCAATGCTTAAAAAGCGAAGAGGTATACCTGCAGCTTCACGTTCTTATAAGGATTGGAAATCAGGTGTTTCTTACTCAGAACTTGTTGAATCAACTAACGGGTTCTCTAGGGAAAATCTTATTGGTTCAGGAAGTTTTGGTTCTGTTTACAAAGGAGTAGTCCCTAGTGACGGAACTCTAGTTGCAGTGAAGGTATTAAATCTTCAACAACAAGGAGCATCCAAGAGTTTTATGGATGAATGCAAAGCTTTGAGAAGCATAAGGCACCGTAATCTTCTCAAGATCATAACTGCATGCTCAAGCATTGACAATCAGGGTCAAGATTTCAAAAGTCTAGTTTTTCAGTACATGGTGAATGGAAGTCTAGATGTTTGGCTGCATCCTAGAGATGATGAGCAATCTCAAAGCAAGAGATTGAGCCTTATCCAAAGACTCAATATTGCAATTGACGTTGCTTCTGCATTGGATTATATCCACCACCATTGCGGAACTTCAATTGTTCATTGTGATATAAAGCCAAGTAATGTTCTTCTTGACGAAGATATGGTGGCTCACGTTGGTGACTTTGGTTTAGCAAGGTTCCTCTTGGAGTCGTCTGATGATCCCTCTCAAAGTCAAACCATGTCAACCGGCTTAAAGGGTTCGATAGGCTACATTCCTTCAGAGTATGGCATGGGAGGTCAAGTTTCCATCTTTGGAGATATTTATAGCTTTGGAATATTGTTGCTAGAAATATTCACAGGAAGAAAACCTACAGATGACATGTTCAACGATGGTCTAAGCATTCGCCAGTTTGCTACCATGGCAATGCCTGACCATGCCATGGACATAGTTGACCCTTCATTGCTCATTGAATGTGGAGATGTAGATAGCAGCCGACTTGAAGCAAGAAGGTTGAAGGAATGCTCAATTGCAGTGATTCAAATTGGACTTTCATGCTCTGCAATATCACCGTTGGAGCGGATGCTTATGGATGTTGCTGTCAACAAATTGAAGAAAATTAGAGAATCATATCTCAATTTAAGAGGTAGAGGCTAG

Protein Analysis

451

Amino Acids

49.4

Weight (kDa)

7.94

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 141 - 363 1.1e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 143 - 383 4.6e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
Acc36I ACCTGC 2 cut(s) 205, 352
AccB1I GGYRCC 1 cut(s) 579
AccB7I CCANNNNNTGG 1 cut(s) 1138
AccBSI CCGCTC 1 cut(s) 1276
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 801, 1276
AclWI GGATC 2 cut(s) 12, 911
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 132, 960
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 3 cut(s) 116, 485, 1138
AflIII ACRYGT 1 cut(s) 1077
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AleI CACNNNNGTG 1 cut(s) 873
AluBI AGCT 6 cut(s) 166, 180, 266, 350, 563, 1026
AluI AGCT 6 cut(s) 166, 180, 266, 350, 563, 1026
Alw21I GWGCWC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 270
AlwI GGATC 2 cut(s) 12, 911
Ama87I CYCGRG 1 cut(s) 228
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 3 cut(s) 347, 691, 1188
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
Asp700I GAANNNNTTC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 679, 887, 1257
AvaI CYCGRG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 579
BarI GAAGNNNNNNTAC 4 cut(s) 501, 533, 1051, 1083
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 3 cut(s) 359, 678, 1200
BccI CCATC 2 cut(s) 1013, 1082
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 8 cut(s) 423, 480, 494, 650, 680, 699, 1043, 1351
BfmI CTRYAG 3 cut(s) 261, 345, 1068
BfuAI ACCTGC 2 cut(s) 205, 352
BisI GCNGC 3 cut(s) 348, 692, 1189
BlsI GCNGC 3 cut(s) 349, 693, 1190
Bme1390I CCNGG 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 228
BmiI GGNNCC 2 cut(s) 581, 896
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 4 cut(s) 79, 542, 703, 1269
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 578, 598
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 1116, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 485, 1138
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 2 cut(s) 142, 1105
Bse3DI GCAATG 3 cut(s) 796, 1128, 1157
BseDI CCNNGG 2 cut(s) 1116, 1137
BseGI GGATG 6 cut(s) 255, 533, 556, 694, 1284, 1294
BseLI CCNNNNNNNGG 3 cut(s) 116, 485, 1138
BseMI GCAATG 3 cut(s) 796, 1128, 1157
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 142, 1105
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 3 cut(s) 359, 678, 1200
Bsh1236I CGCG 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 2 cut(s) 27, 945
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 3 cut(s) 116, 485, 1138
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 3 cut(s) 560, 1098, 1223
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 4, 597, 916
Bsp19I CCATGG 2 cut(s) 1116, 1137
BspACI CCGC 2 cut(s) 801, 1276
BspCNI CTCAG 1 cut(s) 404
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 581, 896
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 2 cut(s) 205, 352
BspPI GGATC 2 cut(s) 12, 911
BspT107I GGYRCC 1 cut(s) 579
BsrBI CCGCTC 1 cut(s) 1276
BsrDI GCAATG 3 cut(s) 796, 1128, 1157
BsrFI RCCGGY 1 cut(s) 944
BsrI ACTGG 2 cut(s) 142, 1105
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 2 cut(s) 1116, 1137
BssMI GATC 3 cut(s) 4, 597, 916
BssNAI GTATAC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 1116, 1137
Bst1107I GTATAC 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 584, 1269
Bst6I CTCTTC 1 cut(s) 328
BstC8I GCNNGC 3 cut(s) 202, 313, 610
BstDEI CTNAG 5 cut(s) 47, 65, 162, 391, 1094
BstDSI CCRYGG 2 cut(s) 1116, 1137
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 6 cut(s) 255, 533, 556, 694, 1284, 1294
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 3 cut(s) 7, 600, 919
BstMBI GATC 3 cut(s) 4, 597, 916
BstMWI GCNNNNNNNGC 2 cut(s) 328, 1118
BstNSI RCATGY 4 cut(s) 55, 204, 612, 1081
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 3 cut(s) 261, 345, 1068
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 359, 678, 1200
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZ17I GTATAC 1 cut(s) 341
BtgI CCRYGG 2 cut(s) 1116, 1137
BtsCI GGATG 6 cut(s) 255, 533, 556, 694, 1284, 1294
BtsI GCAGTG 2 cut(s) 507, 1236
BtsIMutI CAGTG 2 cut(s) 507, 1236
BveI ACCTGC 2 cut(s) 205, 352
Cac8I GCNNGC 3 cut(s) 202, 313, 610
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 944
Csp6I GTAC 1 cut(s) 661
CspCI CAANNNNNGTGG 2 cut(s) 779, 814
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 5 cut(s) 47, 65, 162, 391, 1094
DpnI GATC 3 cut(s) 6, 599, 918
DpnII GATC 3 cut(s) 4, 597, 916
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 1116, 1137
Eco57I CTGAAG 2 cut(s) 132, 960
Eco88I CYCGRG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 1116, 1137
ErhI CCWWGG 2 cut(s) 1116, 1137
FaqI GGGAC 1 cut(s) 461
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 348, 692, 1189
FokI GGATG 6 cut(s) 242, 520, 563, 681, 1291, 1301
Fsp4HI GCNGC 3 cut(s) 348, 692, 1189
FspBI CTAG 8 cut(s) 423, 480, 494, 650, 680, 699, 1043, 1351
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 348, 692, 1189
HapII CCGG 2 cut(s) 27, 945
HhaI GCGC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 3 cut(s) 942, 1150, 1300
HindII GTYRAC 3 cut(s) 942, 1150, 1300
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 7 cut(s) 34, 120, 404, 747, 905, 1234, 1322
HpaII CCGG 2 cut(s) 27, 945
HphI GGTGA 3 cut(s) 679, 887, 1257
Hpy166II GTNNAC 6 cut(s) 272, 341, 463, 942, 1150, 1300
Hpy188I TCNGA 3 cut(s) 394, 913, 979
Hpy188III TCNNGA 7 cut(s) 38, 228, 444, 595, 635, 680, 848
Hpy8I GTNNAC 6 cut(s) 272, 341, 463, 942, 1150, 1300
HpyAV CCTTC 7 cut(s) 110, 289, 499, 984, 1164, 1200, 1207
HpyCH4III ACNGT 2 cut(s) 584, 1269
HpyCH4IV ACGT 3 cut(s) 355, 765, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 1118
HpyF3I CTNAG 5 cut(s) 47, 65, 162, 391, 1094
HpySE526I ACGT 3 cut(s) 355, 765, 870
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 3 cut(s) 4, 597, 916
LmnI GCTCC 2 cut(s) 530, 1273
Lsp1109I GCAGC 3 cut(s) 359, 678, 1200
LweI GCATC 4 cut(s) 79, 542, 703, 1269
MaeI CTAG 8 cut(s) 423, 480, 494, 650, 680, 699, 1043, 1351
MaeII ACGT 3 cut(s) 355, 765, 870
MaeIII GTNAC 2 cut(s) 482, 875
MalI GATC 3 cut(s) 6, 599, 918
MbiI CCGCTC 1 cut(s) 1276
MboI GATC 3 cut(s) 4, 597, 916
MboII GAAGA 8 cut(s) 125, 345, 509, 581, 836, 866, 1071, 1321
MfeI CAATTG 3 cut(s) 759, 810, 1224
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 274
MlyI GAGTC 2 cut(s) 741, 914
MmeI TCCRAC 1 cut(s) 1251
MnlI CCTC 9 cut(s) 91, 224, 228, 329, 908, 931, 986, 1334, 1340
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 4 cut(s) 324, 512, 950, 1337
MslI CAYNNNNRTG 2 cut(s) 873, 1121
MspI CCGG 2 cut(s) 27, 945
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 3 cut(s) 759, 810, 1224
Mva1269I GAATGC 3 cut(s) 560, 1098, 1223
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 328, 1118
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 2 cut(s) 1116, 1137
NdeII GATC 3 cut(s) 4, 597, 916
NlaIV GGNNCC 2 cut(s) 581, 896
NmuCI GTSAC 2 cut(s) 482, 875
NspI RCATGY 4 cut(s) 55, 204, 612, 1081
OliI CACNNNNGTG 1 cut(s) 873
PaeI GCATGC 2 cut(s) 204, 612
PaeR7I CTCGAG 1 cut(s) 228
PciI ACATGT 1 cut(s) 1077
PctI GAATGC 3 cut(s) 560, 1098, 1223
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 5 cut(s) 34, 120, 404, 1234, 1322
PflMI CCANNNNNTGG 1 cut(s) 1138
PkrI GCNGC 3 cut(s) 349, 693, 1190
PleI GAGTC 2 cut(s) 741, 913
PpsI GAGTC 2 cut(s) 741, 913
PscI ACATGT 1 cut(s) 1077
PsiI TTATAA 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 581, 896
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
RseI CAYNNNNRTG 2 cut(s) 873, 1121
SaqAI TTAA 4 cut(s) 324, 512, 950, 1337
SatI GCNGC 3 cut(s) 348, 692, 1189
Sau3AI GATC 3 cut(s) 4, 597, 916
SchI GAGTC 2 cut(s) 741, 914
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 4 cut(s) 79, 542, 703, 1269
SfcI CTRYAG 3 cut(s) 261, 345, 1068
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 873, 1121
SmlI CTYRAG 3 cut(s) 228, 593, 613
SmoI CTYRAG 3 cut(s) 228, 593, 613
SphI GCATGC 2 cut(s) 204, 612
SsiI CCGC 2 cut(s) 801, 1276
SspI AATATT 3 cut(s) 754, 1035, 1050
SspMI CTAG 8 cut(s) 423, 480, 494, 650, 680, 699, 1043, 1351
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 2 cut(s) 1116, 1137
TaaI ACNGT 2 cut(s) 584, 1269
TaiI ACGT 3 cut(s) 358, 768, 873
TaqI TCGA 3 cut(s) 182, 229, 959
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 5 cut(s) 34, 120, 404, 1234, 1322
Tru1I TTAA 4 cut(s) 324, 512, 950, 1337
Tru9I TTAA 4 cut(s) 324, 512, 950, 1337
TscAI CASTG 2 cut(s) 507, 1236
TseFI GTSAC 2 cut(s) 482, 875
TseI GCWGC 3 cut(s) 347, 691, 1188
Tsp45I GTSAC 2 cut(s) 482, 875
TspDTI ATGAA 8 cut(s) 72, 213, 271, 292, 567, 806, 1146, 1239
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 2 cut(s) 507, 1236
Van91I CCANNNNNTGG 1 cut(s) 1138
VneI GTGCAC 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 4 cut(s) 55, 204, 612, 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 8 cut(s) 423, 480, 494, 650, 680, 699, 1043, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.