RchiOBHm_Chr3g0463411

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000262
Physical Location & Seq
Reverse (-)
10767559 .. 10768083
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42973

Sequence Viewer

Length: 525 bp
ATGATGAAAAAGCCGAGAGATGGACCTTTGACTTCATCTTCTCATAATGATTCATATCCAAGTATCTCTTACTTGGAACTTGTTCAATCAGCTAATGGGTTTTCTGTGGACAATCTGATTGGTTCGGGAAGTTTTGGTTCTGTATACAAAGGATTACTGAGTAGTAATGGAATGGTAGTTGCTGTTAAGGTGTCAAACCTTCAACAACACGGAGCTTCAAAGAGTTTCATTGATGAATGCAGAGCTCTAAAAAGTATAAGGCACCGCAATCTTCTGAAGATCATAACTACCTGCTCAAGCACCGACAATCAGGGTAACGACTTCAAAAGTATAGTTTTCAATTTCATGGAAAATGGAAGTCTAGATCCTTGGCTGCATGCTAGAGAAGACGACGGATCTCAAAGTAAGAGATTGAGCCTTATCGAAAGGCTCAATATTGCCATTGATGTTGCTTGCGCATTAGATTATCTACATGACCATTGTGAAACATCCATTGTGAAACATCCATTGTTCATTGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

174

Amino Acids

19.17

Weight (kDa)

6.64

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 35 - 161 1.2e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 160 4.9e-20 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 359, 403
AcuI CTGAAG 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 5 cut(s) 86, 203, 219, 325, 340
AluBI AGCT 3 cut(s) 92, 215, 245
AluI AGCT 3 cut(s) 92, 215, 245
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 2 cut(s) 359, 403
ApeKI GCWGC 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 23
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 14
BfaI CTAG 2 cut(s) 362, 381
BfuAI ACCTGC 1 cut(s) 299
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 2 cut(s) 488, 502
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 279, 364, 395, 519
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 359, 403
BspT107I GGYRCC 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 4 cut(s) 279, 364, 395, 519
BssNAI GTATAC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 368
Bst1107I GTATAC 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 378, 454
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 488, 502
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 4 cut(s) 282, 367, 398, 522
BstMBI GATC 4 cut(s) 279, 364, 395, 519
BstNSI RCATGY 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 364, 395
BstYI RGATCY 2 cut(s) 364, 395
BstZ17I GTATAC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 488, 502
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 378, 454
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 3 cut(s) 346, 377, 473
CviJI RGCY 7 cut(s) 13, 92, 215, 245, 373, 417, 430
CviKI_1 RGCY 7 cut(s) 13, 92, 215, 245, 373, 417, 430
DdeI CTNAG 1 cut(s) 158
DpnI GATC 4 cut(s) 281, 366, 397, 521
DpnII GATC 4 cut(s) 279, 364, 395, 519
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 3 cut(s) 349, 380, 476
FaiI YATR 9 cut(s) 45, 55, 145, 257, 284, 332, 347, 378, 474
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FatI CATG 3 cut(s) 345, 376, 472
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 475, 489
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 2 cut(s) 362, 381
FspI TGCGCA 1 cut(s) 457
GlaI GCGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 458
Hin1II CATG 3 cut(s) 349, 380, 476
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 109, 145
Hpy188I TCNGA 2 cut(s) 117, 276
Hpy188III TCNNGA 2 cut(s) 126, 362
Hpy8I GTNNAC 2 cut(s) 109, 145
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 240, 376
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 3 cut(s) 349, 380, 476
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 4 cut(s) 279, 364, 395, 519
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 2 cut(s) 296, 304
Lsp1109I GCAGC 1 cut(s) 360
MaeI CTAG 2 cut(s) 362, 381
MaeIII GTNAC 1 cut(s) 314
MalI GATC 4 cut(s) 281, 366, 397, 521
MboI GATC 4 cut(s) 279, 364, 395, 519
MboII GAAGA 4 cut(s) 30, 263, 289, 398
MflI RGATCY 2 cut(s) 364, 395
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 242
NdeII GATC 4 cut(s) 279, 364, 395, 519
NlaIII CATG 3 cut(s) 349, 380, 476
NlaIV GGNNCC 1 cut(s) 263
NmeAIII GCCGAG 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 457
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 2 cut(s) 364, 395
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 4 cut(s) 279, 364, 395, 519
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 247
SetI ASST 7 cut(s) 28, 94, 192, 201, 217, 247, 293
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SphI GCATGC 1 cut(s) 380
Sse9I AATT 1 cut(s) 340
SsiI CCGC 1 cut(s) 265
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 362, 381
SstI GAGCTC 1 cut(s) 247
StyI CCWWGG 1 cut(s) 368
TaqI TCGA 1 cut(s) 423
TasI AATT 1 cut(s) 340
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 7 cut(s) 20, 24, 42, 217, 249, 334, 502
TspGWI ACGGA 2 cut(s) 225, 408
VpaK11BI GGWCC 1 cut(s) 23
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 2 cut(s) 362, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.