RLG00000019553

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
53470252 .. 53471250
999 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019553

Sequence Viewer

Length: 666 bp
ATGGTTGTTGCTGTTAAGGTATTAAACCTTCAACAACATGGAGCATTGAAGAGTTTCATTGATGAATGCAAAGCATTAAGAAGTATAAGGCACCGCAATCTTCTTAAGATCATAACTGCCTGCTCAAGCATTGATAATCAGGGAAATGACTTCAAAAGTCTAGTTTTTGAGTTCATGGAAAATGGAAGTCTAGACTCTTGGCTGCATCCCAGAGATGATGAGCAATCTCAAGGGAAGAGATTGAGCCTCATCCAAAGACTGAATATTGTCATCGATGTGGCTTCTGCAATAGAATATCTCCACCACTATTGTGAACCATCCATTGCCCATTGTGATCTAAAGCCCAGCAATGTTCTTCTTGATGAAGATATGGTAGCTCATGTTGAGTACAGCATGGGAGCCAAAGTTTCCATACTAGGGGATATTTATAGCTATGGGATACTGTTGCTAGAAATGTTCACAGGGAGAAGACCTACCGATGACATGTTCAAAGATGGTCTAAGCATTCACCAGTGTACAGCTATGGCTTTGCCTGACCATGTTATGGATGTTGTTAACCCTTTGTTGCTCACAGAAAGAGATCAAGAGAATGATGGTGGTGGCAGAGGCAGAAACAATGTCCAAGAAAGACCAACAAGACATCAGGATCCTGACCTAGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

222

Amino Acids

24.95

Weight (kDa)

5.52

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 127 3.8e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 123 1.9e-17 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 544
AciI CCGC 1 cut(s) 94
AclWI GGATC 2 cut(s) 641, 654
AfaI GTAC 2 cut(s) 389, 517
AfiI CCNNNNNNNGG 2 cut(s) 417, 544
AflII CTTAAG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 4 cut(s) 32, 49, 154, 490
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 3 cut(s) 377, 432, 521
AluI AGCT 3 cut(s) 377, 432, 521
AlwI GGATC 2 cut(s) 641, 654
ApeKI GCWGC 1 cut(s) 202
Asp700I GAANNNNTTC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 500
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 189
BccI CCATC 3 cut(s) 325, 488, 587
BciVI GTATCC 1 cut(s) 432
BfaI CTAG 5 cut(s) 161, 191, 416, 449, 656
BfrI CTTAAG 1 cut(s) 104
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmiI GGNNCC 3 cut(s) 92, 400, 648
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 475
BpuEI CTTGAG 2 cut(s) 109, 213
Bsa29I ATCGAT 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 544
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 2 cut(s) 321, 355
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 4 cut(s) 205, 249, 317, 553
BseLI CCNNNNNNNGG 2 cut(s) 417, 544
BseMI GCAATG 2 cut(s) 321, 355
BseNI ACTGG 1 cut(s) 511
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 90
BshVI ATCGAT 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 417, 544
BsmI GAATGC 2 cut(s) 71, 504
Bsp1407I TGTACA 1 cut(s) 515
Bsp143I GATC 4 cut(s) 108, 334, 580, 646
BspACI CCGC 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 92, 400, 648
BspPI GGATC 2 cut(s) 641, 654
BspT107I GGYRCC 1 cut(s) 90
BspTI CTTAAG 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 321, 355
BsrGI TGTACA 1 cut(s) 515
BsrI ACTGG 1 cut(s) 511
BssMI GATC 4 cut(s) 108, 334, 580, 646
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 2 cut(s) 44, 230
BstAFI CTTAAG 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 4 cut(s) 205, 249, 317, 553
BstKTI GATC 4 cut(s) 111, 337, 583, 649
BstMBI GATC 4 cut(s) 108, 334, 580, 646
BstNSI RCATGY 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
Bsu15I ATCGAT 1 cut(s) 273
BsuI GTATCC 1 cut(s) 432
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 4 cut(s) 205, 249, 317, 553
BtsIMutI CAGTG 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 388, 516
CspCI CAANNNNNGTGG 2 cut(s) 290, 325
CviAII CATG 6 cut(s) 38, 175, 380, 394, 484, 539
CviJI RGCY 9 cut(s) 202, 246, 281, 343, 377, 401, 432, 521, 527
CviKI_1 RGCY 9 cut(s) 202, 246, 281, 343, 377, 401, 432, 521, 527
CviQI GTAC 2 cut(s) 388, 516
DdeI CTNAG 1 cut(s) 500
DpnI GATC 4 cut(s) 110, 336, 582, 648
DpnII GATC 4 cut(s) 108, 334, 580, 646
Eam1104I CTCTTC 2 cut(s) 44, 230
EarI CTCTTC 2 cut(s) 44, 230
FaeI CATG 6 cut(s) 41, 178, 383, 397, 487, 542
FatI CATG 6 cut(s) 37, 174, 379, 393, 483, 538
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 4 cut(s) 192, 236, 304, 560
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 5 cut(s) 161, 191, 416, 449, 656
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 348
Hin1II CATG 6 cut(s) 41, 178, 383, 397, 487, 542
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 556
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 4 cut(s) 314, 459, 516, 556
Hpy188III TCNNGA 5 cut(s) 191, 359, 584, 644, 650
Hpy8I GTNNAC 4 cut(s) 314, 459, 516, 556
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4V TGCA 3 cut(s) 69, 205, 287
HpyF3I CTNAG 1 cut(s) 500
Hsp92II CATG 6 cut(s) 41, 178, 383, 397, 487, 542
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 4 cut(s) 108, 334, 580, 646
LmnI GCTCC 2 cut(s) 41, 398
LpnPI CCDG 8 cut(s) 125, 133, 223, 358, 447, 524, 546, 629
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 214
MaeI CTAG 5 cut(s) 161, 191, 416, 449, 656
MalI GATC 4 cut(s) 110, 336, 582, 648
MboI GATC 4 cut(s) 108, 334, 580, 646
MboII GAAGA 6 cut(s) 61, 92, 247, 347, 377, 480
MflI RGATCY 1 cut(s) 646
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 257, 599
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 5 cut(s) 15, 23, 77, 105, 555
MslI CAYNNNNRTG 2 cut(s) 275, 309
MspCI CTTAAG 1 cut(s) 104
Mva1269I GAATGC 2 cut(s) 71, 504
NdeII GATC 4 cut(s) 108, 334, 580, 646
NlaIII CATG 6 cut(s) 41, 178, 383, 397, 487, 542
NlaIV GGNNCC 3 cut(s) 92, 400, 648
NspI RCATGY 1 cut(s) 487
OliI CACNNNNGTG 1 cut(s) 309
PciI ACATGT 1 cut(s) 483
PctI GAATGC 2 cut(s) 71, 504
PdmI GAANNNNTTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 656
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PscI ACATGT 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 92, 400, 648
PsuI RGATCY 1 cut(s) 646
PsyI GACNNNGTC 1 cut(s) 656
RsaI GTAC 2 cut(s) 389, 517
RsaNI GTAC 2 cut(s) 388, 516
RseI CAYNNNNRTG 2 cut(s) 275, 309
SaqAI TTAA 5 cut(s) 15, 23, 77, 105, 555
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 4 cut(s) 108, 334, 580, 646
SchI GAGTC 1 cut(s) 188
SetI ASST 7 cut(s) 21, 30, 379, 434, 475, 523, 657
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 275, 309
SmlI CTYRAG 3 cut(s) 104, 124, 228
SmoI CTYRAG 3 cut(s) 104, 124, 228
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 265
SspMI CTAG 5 cut(s) 161, 191, 416, 449, 656
TaaI ACNGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 273
TatI WGTACW 2 cut(s) 387, 515
Tru1I TTAA 5 cut(s) 15, 23, 77, 105, 555
Tru9I TTAA 5 cut(s) 15, 23, 77, 105, 555
TscAI CASTG 1 cut(s) 518
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 4 cut(s) 46, 78, 163, 378
TspRI CASTG 1 cut(s) 518
Tth111I GACNNNGTC 1 cut(s) 656
Van91I CCANNNNNTGG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 104
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 5 cut(s) 161, 191, 416, 449, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.