MD07G1217800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000262
Physical Location & Seq
Reverse (-)
29531734 .. 29533668
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1217800.v1.1.491

Sequence Viewer

Length: 231 bp
ATGTTGGGGTGGGCCGACTCACTGGGCCTTCATTTGGTGCCTGACTATCCGGTCCAATGTTTTAATTTGGATGTTTTTGAGATTTTGGGTTCGTCCCTCGATTCTGCTCCTCGATTCGCTACCCAGAAGATCAGTTCTCAAGGCTTGACTTCTAAAAACGTATCCTGCAAAGCTATGCTTCACAAGTTTACAATGCCCGTCAATTGCAGCACATACATTTGTGTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.33

Weight (kDa)

6.68

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AoxI GGCC 2 cut(s) 12, 25
ApeKI GCWGC 1 cut(s) 207
AspS9I GGNCC 3 cut(s) 12, 25, 52
AvaII GGWCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 219
BciVI GTATCC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 12, 25, 52
BmiI GGNNCC 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 2 cut(s) 14, 27
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 14, 27
Bsp143I GATC 1 cut(s) 129
BspANI GGCC 2 cut(s) 14, 27
BspLI GGNNCC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 27
BssMI GATC 1 cut(s) 129
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 219
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 14, 27
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 12, 25, 52
CviJI RGCY 4 cut(s) 14, 27, 144, 173
CviKI_1 RGCY 4 cut(s) 14, 27, 144, 173
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 52
FaiI YATR 3 cut(s) 176, 214, 229
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 14, 27
HapII CCGG 1 cut(s) 50
HinfI GANTC 3 cut(s) 17, 101, 114
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 168, 207
HpySE526I ACGT 1 cut(s) 159
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 8, 54, 63, 137, 178
Lsp1109I GCAGC 1 cut(s) 219
MaeII ACGT 1 cut(s) 159
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 1 cut(s) 202
MluCI AATT 2 cut(s) 64, 202
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 2 cut(s) 107, 120
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 202
NdeII GATC 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 101, 114
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 3 cut(s) 12, 25, 52
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 3 cut(s) 12, 25, 52
SchI GAGTC 1 cut(s) 11
SetI ASST 2 cut(s) 162, 175
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 2 cut(s) 64, 202
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 99, 112
TasI AATT 2 cut(s) 64, 202
TfiI GAWTC 2 cut(s) 101, 114
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.