MD00G1080000.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
16028653 .. 16032144
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1080000.v1.1.491

Sequence Viewer

Length: 3150 bp
ATGATGGAGCATTCACGTACTATTCGTAATCTGGTTTTGTTGAAATTCCTGCATGGCTTATTTCTCTTAGTCTTATGCATGATGAGCACATGTCCGGAATCTGCAGCATTTCCCAGCCCTACCCTGCTTGGAAACGAATCTGATCACTTGGCTTTGCTAGACTTCAAGAAAAGAATAACTGAAGATCCTCTCAGTGTCATGAGCTCGTGGAATCATTCCATCCACTTCTGCAGTTGGGTAGGCATTACATGCCACCGTGCCACCCAAAGAGTCTTGATTCTGGACCTGGAAGATAAACAACTGGTAGGCTCCATTCCACCTTCCATTGGAAATCTCACTCGTCTAATTGAAATAAGCTTGGGAATCAACGAGTTTCATGGAGAAATTCCTCAAGAATTGGGTCGACTACGTACCCTGGAAAGTCTCAACCTATCTTTCAACTCTTTAGGCGGGAAAATTCCGACTAATATGTCCCACTGTACACAACTGAGATTTTTGGATCTTTATTCCAATAAGATTATTGGGTCAATTCCACGCCAACTCAGTTCCTGGTTGAGTTTGACTGTTCTACAACTTGGAAAAAATAATCTTAGTGGAACCATCCCAGGTTGGATAGGAAATTTTTCTTCTTTAAGGAGTCTTAGACTTGCCCGCAACAATTTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGAAGATATTCCTCGTTGGGGAGAATAATTTGTCTGGTATGCTCCCTTCTTCAATTTATAATATTTCTTCCATATACAAGTTCGGTGTTGCTGTAAACCAAGTACATGGAGAGCTACCACCAAATCTCGGCATCTTGCTTCCTAATCTCATAGTATTTGAATGTTGTATAAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGCTTCTAGACTTCAGAAGATTGAATTTTCTGTAAATGACTTCACGGGGACAGTCCCTGGAGAAAGTCTCGGAAGCTTGCGAAGCTTAATTTGGCTAAACTTTGCAGTCAATCGATTGGGAAATGGAAAACTTGGTGATTTGAGTTTTCTCAATTTCTTGACTAATTGTACTAGTCTTCAATATCTGGGTCTTGGCTATAATCGTTTTGGGGGAGAAATCCCGAGATCCATAGCCAACCTTTCGACCCAACTACAAGTTCTTGCTCTAGGGAGAAATTTGTTACATGGAAGCCTCCCAAATGGCATTGGAAATCTTATAAACCTTATGGTTCTAGATATGTCTAATAACTATTTGGCAGGTGTTGTCCCTGTAGAAATTGGGAAGCTTGAGAAGATAGGGAAACTGTATTTGTTTGATAACAAATTTTATGGGCCAATTCCATCTTCCCTGGGTAATATGACTTCATTGATAGATCTTTGCATGTACAGAAACAATTTTGAGGGAAGTATACCTCCAAGTCTTGGAAACTGCCAAAACCTTTTAGTACTTGCACTTCGGAATAACAATCTAACGGGCAGCATACCTCAAAAGCTTATGGAGCTTTCAGCCCTTTCAATTGGTTTGGACCTGTCTGAAAATTATTTGACCGGTTCACTGCCAAGTAATGTGGGTGATCTGGTGCATCTCACAGAAATAGATGTATCAAACAACAAGTTATCAGGTGAAATCCCCAGCACCATCGGCAGTTGTACTAGCTTGGGGCGCTTGTTCTTGGACGACAACAAATTTGAAGGAACAATTCCTCAGTCTCTTAAAGATTTAAAAGGCTTGGAAGTACTTGACATTTCAAGCAATAAGTTATCTGGGCAGATTCCTGAATTCATAGGCAAGCTTGGAGCACTTAAGTATCTCAATCTTTCGTATAATGATTTTGAAGGCGAGTTGCCTAAAGAAGGAATTTTTTCAAATGTCAGTGGTGTCTCAGTTCTTGGAAATCATAAGCTCTGTGATGGCACCCCACAATTACATTTGCCTGCATGCCCCAAAAATAAACATCATTCATCTCGAGGACTATTTTCCCTAAAAGTAGTCATCCCTATATCTTGTGCACTTGCATTCATAATTGCTCTATCATGCTTCCTTGGTGCTCGTTCAATGCTGAAAAACTCAAGTGATGGACTTGTAACTTCACGCTCTTATAAGGATTGGAAATTAGGTGTTTCCTACTCACAACTTGTTGAATCGACTAACGGTTTCTCTGTGGATAATTTGATTGGTTCGGGAAGTTTTGGTTCTGTTTATAAAGGGGTAATTCCTAACGATGGAACGGTAGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCGTCCAAGAGTTTCAATGATGAATGCAAAGCTTTAAGAAGTGTCATGCACCGAAATCTTGTCAAGATCATAACTGCATGCTCGAGCATTGATAATCATGGTAAAGACTTCAAAAGTCTAGTCTTCGAGTTCATGCCAAATGGAAGTCTTGACTCGTGGTTGCATCCTAGAGATAAGGAGCAATCTCCAAGTAAGAGATTGAATTTTATGCAAAGATTGAACATAGCCATTGATGTTGCTTCTGCATTAGATTATCTCCACAACCATTGTGAAACGTCCATTGTTCATTGTGATCTAAAGCCGAGCAATGTACTTCTTGATGAAGACATGGTAGCCCATGTTGGGGACTTTGGTTTAGCAAGGTTCCTATTGGAAGCATCAAATGATCATTCCCTTAGTCAAATAATGTCATCGCAACTAAAGGGTTCTATAGGTTACATTCCTCCAGAGTACGGCATGGGAGGCCAAGTTTCCATACTAGGAGATGTTTACAGCTACGGGATACTTTTGCTAGAAATGTTCACGGGAAAAACACCTACTGATGACATGTTCATCGAAGGTCTAAGCATTTACAAATTCGTAGCCATGGCTTTGCCCGACCATGTCATGGACGTTGTTGACCCTTCATTGCTCCTCGACCTCGAAGTTGATGGTAGTGTTAACGATGACAGATACGAAAAGACTGAGCTGCCCAGACGTAACAATCGCGGAGTCATGAAAGCAAAAAAGGTAGAGGAATGCTTGTTTGTTGTGATGCAGATAGGACTCTCTTGCTGTGCAATATCACCCAGGGAGCGAATGCTTCTGAATATGGTTGTCGGAAAAATGAGTACAATTAGAGACTCGTACCTCAAAGCTGAAGAAGGCTAA

Protein Analysis

1050

Amino Acids

114.95

Weight (kDa)

6.43

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 46 - 84 7.9e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 162 - 221 2e-06 Leucine rich repeat
LRR_14 PF23598 354 - 465 9.7e-09 Leucine-rich repeat region
LRR_8 PF13855 387 - 446 7.4e-06 Leucine rich repeat
LRR_14 PF23598 391 - 504 1.5e-08 Leucine-rich repeat region
LRR_14 PF23598 474 - 614 5.8e-12 Leucine-rich repeat region
LRR_8 PF13855 556 - 615 4.8e-09 Leucine rich repeat
Pkinase PF00069 724 - 941 7.7e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 725 - 943 4.7e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 762, 1229, 2112, 2214
AarI CACCTGC 1 cut(s) 1259
AasI GACNNNNNNGTC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 1259
AccB1I GGYRCC 1 cut(s) 1925
AccB7I CCANNNNNTGG 2 cut(s) 1433, 2887
AccI GTMKAC 2 cut(s) 403, 1420
AccII CGCG 1 cut(s) 2988
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 3 cut(s) 450, 652, 2988
AclWI GGATC 3 cut(s) 179, 507, 1131
AcuI CTGAAG 2 cut(s) 201, 908
AflII CTTAAG 1 cut(s) 1814
AflIII ACRYGT 2 cut(s) 89, 2826
AgeI ACCGGT 1 cut(s) 1559
AhlI ACTAGT 1 cut(s) 1082
AjnI CCWGG 7 cut(s) 285, 414, 548, 604, 967, 1359, 3068
AjuI GAANNNNNNNTTGG 6 cut(s) 985, 1017, 1152, 1184, 1339, 1371
Alw21I GWGCWC 6 cut(s) 89, 206, 687, 1813, 2023, 2062
Alw26I GTCTC 5 cut(s) 428, 983, 1725, 1897, 3114
Alw44I GTGCAC 1 cut(s) 2019
AlwI GGATC 3 cut(s) 179, 507, 1131
AlwNI CAGNNNCTG 2 cut(s) 549, 968
Ama87I CYCGRG 4 cut(s) 686, 1132, 1977, 2362
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 1343, 2743
ApaLI GTGCAC 1 cut(s) 2019
ApeKI GCWGC 3 cut(s) 104, 1488, 2968
ArsI GACNNNNNNTTYG 4 cut(s) 1682, 1714, 2385, 2417
AsiGI ACCGGT 1 cut(s) 1559
Asp700I GAANNNNTTC 3 cut(s) 622, 710, 1873
AspLEI GCGC 1 cut(s) 1677
AspS9I GGNCC 3 cut(s) 283, 1343, 1537
AsuHPI GGTGA 4 cut(s) 1058, 1595, 1646, 3057
AvaI CYCGRG 4 cut(s) 686, 1132, 1977, 2362
AvaII GGWCC 2 cut(s) 283, 1537
BaeGI GKGCMC 1 cut(s) 2023
BaeI ACNNNNGTAYC 2 cut(s) 1802, 1835
BanI GGYRCC 1 cut(s) 1925
BanII GRGCYC 2 cut(s) 206, 687
BarI GAAGNNNNNNTAC 8 cut(s) 733, 765, 1357, 1389, 1449, 1481, 2250, 2282
BauI CACGAG 2 cut(s) 205, 2434
BbsI GAAGAC 3 cut(s) 1079, 2395, 2610
Bbv12I GWGCWC 6 cut(s) 89, 206, 687, 1813, 2023, 2062
BbvI GCAGC 3 cut(s) 116, 1500, 2955
BccI CCATC 8 cut(s) 227, 608, 1360, 1658, 1916, 2081, 2228, 2924
BceAI ACGGC 1 cut(s) 2749
BciT130I CCWGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
BciVI GTATCC 1 cut(s) 2775
BclI TGATCA 2 cut(s) 142, 2665
BcoDI GTCTC 5 cut(s) 428, 983, 1725, 1897, 3114
BcuI ACTAGT 1 cut(s) 1082
BfmI CTRYAG 4 cut(s) 102, 229, 1281, 2709
BfoI RGCGCY 1 cut(s) 1678
BfrI CTTAAG 1 cut(s) 1814
BfuAI ACCTGC 1 cut(s) 1259
BfuI GTATCC 1 cut(s) 2775
BglII AGATCT 1 cut(s) 1384
BisI GCNGC 3 cut(s) 105, 1489, 2969
BlsI GCNGC 3 cut(s) 106, 1490, 2970
BmcAI AGTACT 2 cut(s) 1458, 1749
Bme1390I CCNGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
Bme18I GGWCC 2 cut(s) 283, 1537
BmeT110I CYCGRG 4 cut(s) 686, 1132, 1977, 2362
BmgT120I GGNCC 3 cut(s) 283, 1343, 1537
BmiI GGNNCC 4 cut(s) 310, 598, 1927, 2645
BmrFI CCNGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
BmsI GCATC 5 cut(s) 843, 1603, 2452, 2666, 3024
BpiI GAAGAC 3 cut(s) 1079, 2395, 2610
BplI GAGNNNNNCTC 2 cut(s) 963, 995
BpmI CTGGAG 2 cut(s) 990, 2709
BpuEI CTTGAG 3 cut(s) 375, 1319, 2065
Bsa29I ATCGAT 1 cut(s) 1024
BsaAI YACGTR 2 cut(s) 17, 410
BsaJI CCNNGG 9 cut(s) 414, 604, 967, 1359, 1360, 2053, 2865, 3068, 3069
BsaWI WCCGGW 2 cut(s) 94, 1559
BsaXI ACNNNNNCTCC 2 cut(s) 2733, 2763
Bse118I RCCGGY 1 cut(s) 1559
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 2593, 2906
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
BseCI ATCGAT 1 cut(s) 1024
BseDI CCNNGG 9 cut(s) 414, 604, 967, 1359, 1360, 2053, 2865, 3068, 3069
BseGI GGATG 4 cut(s) 219, 600, 2004, 2443
BseMI GCAATG 2 cut(s) 2593, 2906
BseMII CTCAG 6 cut(s) 205, 479, 556, 1730, 1908, 2955
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 2903
BseSI GKGCMC 1 cut(s) 2023
BseXI GCAGC 3 cut(s) 116, 1500, 2955
BseYI CCCAGC 2 cut(s) 113, 1643
Bsh1236I CGCG 1 cut(s) 2988
BshFI GGCC 2 cut(s) 1345, 2745
BshNI GGYRCC 1 cut(s) 1925
BshTI ACCGGT 1 cut(s) 1559
BshVI ATCGAT 1 cut(s) 1024
BsiHKAI GWGCWC 6 cut(s) 89, 206, 687, 1813, 2023, 2062
BsiHKCI CYCGRG 4 cut(s) 686, 1132, 1977, 2362
BsiSI CCGG 2 cut(s) 95, 1560
BslFI GGGAC 5 cut(s) 457, 950, 973, 1262, 2639
BsmAI GTCTC 5 cut(s) 428, 983, 1725, 1897, 3114
BsmFI GGGAC 5 cut(s) 457, 950, 973, 1262, 2639
BsmI GAATGC 5 cut(s) 10, 2027, 2309, 3023, 3084
BsnI GGCC 2 cut(s) 1345, 2745
BsoBI CYCGRG 4 cut(s) 686, 1132, 1977, 2362
Bsp1286I GDGCHC 6 cut(s) 89, 206, 687, 1813, 2023, 2062
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 479, 1395
Bsp143I GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
Bsp19I CCATGG 1 cut(s) 2865
BspACI CCGC 3 cut(s) 450, 652, 2988
BspANI GGCC 2 cut(s) 1345, 2745
BspCNI CTCAG 6 cut(s) 204, 480, 555, 1729, 1907, 2956
BspDI ATCGAT 1 cut(s) 1024
BspEI TCCGGA 1 cut(s) 94
BspFNI CGCG 1 cut(s) 2988
BspHI TCATGA 2 cut(s) 198, 2994
BspLI GGNNCC 4 cut(s) 310, 598, 1927, 2645
BspMAI CTGCAG 2 cut(s) 106, 233
BspMI ACCTGC 1 cut(s) 1259
BspPI GGATC 3 cut(s) 179, 507, 1131
BspT107I GGYRCC 1 cut(s) 1925
BspTI CTTAAG 1 cut(s) 1814
BsrDI GCAATG 2 cut(s) 2593, 2906
BsrFI RCCGGY 1 cut(s) 1559
BsrGI TGTACA 2 cut(s) 479, 1395
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 1559
BssECI CCNNGG 9 cut(s) 414, 604, 967, 1359, 1360, 2053, 2865, 3068, 3069
BssMI GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
BssNAI GTATAC 1 cut(s) 1421
BssSI CACGAG 2 cut(s) 205, 2434
BssT1I CCWWGG 2 cut(s) 2053, 2865
Bst1107I GTATAC 1 cut(s) 1421
Bst2BI CACGAG 2 cut(s) 205, 2434
Bst2UI CCWGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
Bst4CI ACNGT 7 cut(s) 257, 479, 565, 964, 1317, 2165, 2242
BstAFI CTTAAG 1 cut(s) 1814
BstAPI GCANNNNNTGC 1 cut(s) 249
BstAUI TGTACA 2 cut(s) 479, 1395
BstBAI YACGTR 2 cut(s) 17, 410
BstC8I GCNNGC 6 cut(s) 652, 989, 1802, 1947, 1951, 2359
BstDSI CCRYGG 1 cut(s) 2865
BstENI CCTNNNNNAGG 1 cut(s) 1863
BstF5I GGATG 4 cut(s) 219, 600, 2004, 2443
BstFNI CGCG 1 cut(s) 2988
BstH2I RGCGCY 1 cut(s) 1678
BstHHI GCGC 1 cut(s) 1677
BstKTI GATC 9 cut(s) 145, 187, 502, 1139, 1387, 1588, 2349, 2575, 2668
BstMAI GTCTC 5 cut(s) 428, 983, 1725, 1897, 3114
BstMBI GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
BstMWI GCNNNNNNNGC 7 cut(s) 84, 249, 993, 1510, 1653, 1674, 2742
BstNI CCWGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
BstNSI RCATGY 6 cut(s) 93, 252, 1396, 1953, 2361, 2830
BstSCI CCNGG 7 cut(s) 285, 414, 548, 604, 967, 1359, 3068
BstSFI CTRYAG 4 cut(s) 102, 229, 1281, 2709
BstSLI GKGCMC 1 cut(s) 2023
BstSNI TACGTA 1 cut(s) 410
BstUI CGCG 1 cut(s) 2988
BstV1I GCAGC 3 cut(s) 116, 1500, 2955
BstV2I GAAGAC 3 cut(s) 1079, 2395, 2610
BstX2I RGATCY 4 cut(s) 184, 499, 1136, 1384
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 4 cut(s) 184, 499, 1136, 1384
BstZ17I GTATAC 1 cut(s) 1421
Bsu15I ATCGAT 1 cut(s) 1024
BsuI GTATCC 1 cut(s) 2775
BsuRI GGCC 2 cut(s) 1345, 2745
BsuTUI ATCGAT 1 cut(s) 1024
BtgI CCRYGG 1 cut(s) 2865
BtgZI GCGATG 1 cut(s) 2676
BtsCI GGATG 4 cut(s) 219, 600, 2004, 2443
BtsI GCAGTG 1 cut(s) 1565
BtsIMutI CAGTG 4 cut(s) 199, 475, 1565, 1891
BveI ACCTGC 1 cut(s) 1259
Cac8I GCNNGC 6 cut(s) 652, 989, 1802, 1947, 1951, 2359
CaiI CAGNNNCTG 2 cut(s) 549, 968
CciI TCATGA 2 cut(s) 198, 2994
CfoI GCGC 1 cut(s) 1677
Cfr10I RCCGGY 1 cut(s) 1559
Cfr13I GGNCC 3 cut(s) 283, 1343, 1537
ClaI ATCGAT 1 cut(s) 1024
CseI GACGC 1 cut(s) 2271
CspAI ACCGGT 1 cut(s) 1559
CspCI CAANNNNNGTGG 4 cut(s) 1560, 1595, 2528, 2563
DpnI GATC 9 cut(s) 144, 186, 501, 1138, 1386, 1587, 2348, 2574, 2667
DpnII GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
DraI TTTAAA 1 cut(s) 1734
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
Ecl136II GAGCTC 2 cut(s) 204, 685
Eco105I TACGTA 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 2053, 2865
Eco24I GRGCYC 2 cut(s) 206, 687
Eco47I GGWCC 2 cut(s) 283, 1537
Eco53kI GAGCTC 2 cut(s) 204, 685
Eco57I CTGAAG 2 cut(s) 201, 908
Eco88I CYCGRG 4 cut(s) 686, 1132, 1977, 2362
EcoICRI GAGCTC 2 cut(s) 204, 685
EcoNI CCTNNNNNAGG 1 cut(s) 1863
EcoRI GAATTC 1 cut(s) 1790
EcoRII CCWGG 7 cut(s) 285, 414, 548, 604, 967, 1359, 3068
EcoT14I CCWWGG 2 cut(s) 2053, 2865
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 2 cut(s) 206, 687
ErhI CCWWGG 2 cut(s) 2053, 2865
FaqI GGGAC 5 cut(s) 457, 950, 973, 1262, 2639
FauI CCCGC 2 cut(s) 443, 659
FbaI TGATCA 2 cut(s) 142, 2665
FblI GTMKAC 2 cut(s) 403, 1420
Fnu4HI GCNGC 3 cut(s) 105, 1489, 2969
FokI GGATG 4 cut(s) 206, 587, 1991, 2430
FriOI GRGCYC 2 cut(s) 206, 687
Fsp4HI GCNGC 3 cut(s) 105, 1489, 2969
GlaI GCGC 1 cut(s) 1676
GluI GCNGC 3 cut(s) 105, 1489, 2969
GsaI CCCAGC 2 cut(s) 117, 1647
GsuI CTGGAG 2 cut(s) 990, 2709
HaeII RGCGCY 1 cut(s) 1678
HaeIII GGCC 2 cut(s) 1345, 2745
HapII CCGG 2 cut(s) 95, 1560
HgaI GACGC 1 cut(s) 2271
HhaI GCGC 1 cut(s) 1677
Hin6I GCGC 1 cut(s) 1675
HinP1I GCGC 1 cut(s) 1675
HincII GTYRAC 3 cut(s) 404, 2899, 2941
HindII GTYRAC 3 cut(s) 404, 2899, 2941
HindIII AAGCTT 7 cut(s) 355, 985, 994, 1295, 1502, 1802, 2310
HpaI GTTAAC 1 cut(s) 2941
HpaII CCGG 2 cut(s) 95, 1560
HphI GGTGA 4 cut(s) 1058, 1595, 1646, 3057
Hpy188I TCNGA 8 cut(s) 142, 462, 927, 983, 1470, 1546, 3087, 3101
HpyAV CCTTC 9 cut(s) 330, 759, 1697, 1841, 1859, 2276, 2831, 2913, 3137
HpyCH4III ACNGT 7 cut(s) 257, 479, 565, 964, 1317, 2165, 2242
HpyCH4IV ACGT 5 cut(s) 16, 409, 2555, 2892, 2977
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 249, 993, 1510, 1653, 1674, 2742
HpySE526I ACGT 5 cut(s) 16, 409, 2555, 2892, 2977
HspAI GCGC 1 cut(s) 1675
Kpn2I TCCGGA 1 cut(s) 94
Ksp22I TGATCA 2 cut(s) 142, 2665
KspAI GTTAAC 1 cut(s) 2941
Kzo9I GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
LmnI GCTCC 9 cut(s) 7, 314, 750, 1510, 1808, 2279, 2458, 2916, 3073
Lsp1109I GCAGC 3 cut(s) 116, 1500, 2955
LweI GCATC 5 cut(s) 843, 1603, 2452, 2666, 3024
MaeII ACGT 5 cut(s) 16, 409, 2555, 2892, 2977
MaeIII GTNAC 4 cut(s) 1191, 2095, 2714, 2978
MalI GATC 9 cut(s) 144, 186, 501, 1138, 1386, 1587, 2348, 2574, 2667
MboI GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
MfeI CAATTG 1 cut(s) 1527
MflI RGATCY 4 cut(s) 184, 499, 1136, 1384
MhlI GDGCHC 6 cut(s) 89, 206, 687, 1813, 2023, 2062
MlyI GAGTC 6 cut(s) 279, 646, 2426, 3000, 3039, 3116
MmeI TCCRAC 3 cut(s) 485, 590, 3079
Mph1103I ATGCAT 1 cut(s) 80
MroI TCCGGA 1 cut(s) 94
MroXI GAANNNNTTC 3 cut(s) 622, 710, 1873
MseI TTAA 9 cut(s) 632, 998, 1725, 1733, 1815, 2253, 2261, 2315, 2940
MspCI CTTAAG 1 cut(s) 1814
MspI CCGG 2 cut(s) 95, 1560
MspR9I CCNGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
MunI CAATTG 1 cut(s) 1527
Mva1269I GAATGC 5 cut(s) 10, 2027, 2309, 3023, 3084
MvaI CCWGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
MvnI CGCG 1 cut(s) 2988
MwoI GCNNNNNNNGC 7 cut(s) 84, 249, 993, 1510, 1653, 1674, 2742
NcoI CCATGG 1 cut(s) 2865
NdeII GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
NlaIV GGNNCC 4 cut(s) 310, 598, 1927, 2645
NmeAIII GCCGAG 2 cut(s) 810, 2607
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 6 cut(s) 93, 252, 1396, 1953, 2361, 2830
PaeI GCATGC 2 cut(s) 1953, 2361
PaeR7I CTCGAG 2 cut(s) 1977, 2362
PagI TCATGA 2 cut(s) 198, 2994
PaqCI CACCTGC 1 cut(s) 1259
PasI CCCWGGG 2 cut(s) 1360, 3069
PciI ACATGT 2 cut(s) 89, 2826
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 5 cut(s) 10, 2027, 2309, 3023, 3084
PdmI GAANNNNTTC 3 cut(s) 622, 710, 1873
PfeI GAWTC 7 cut(s) 98, 137, 211, 277, 363, 1783, 2153
PflFI GACNNNGTC 1 cut(s) 2882
PflMI CCANNNNNTGG 2 cut(s) 1433, 2887
PinAI ACCGGT 1 cut(s) 1559
PkrI GCNGC 3 cut(s) 106, 1490, 2970
PleI GAGTC 6 cut(s) 278, 645, 2426, 2999, 3039, 3116
PpsI GAGTC 6 cut(s) 278, 645, 2426, 2999, 3039, 3116
Ppu21I YACGTR 2 cut(s) 17, 410
PscI ACATGT 2 cut(s) 89, 2826
PsiI TTATAA 4 cut(s) 762, 1229, 2112, 2214
Psp124BI GAGCTC 2 cut(s) 206, 687
Psp6I CCWGG 7 cut(s) 285, 414, 548, 604, 967, 1359, 3068
PspFI CCCAGC 2 cut(s) 113, 1643
PspGI CCWGG 7 cut(s) 285, 414, 548, 604, 967, 1359, 3068
PspN4I GGNNCC 4 cut(s) 310, 598, 1927, 2645
PspPI GGNCC 3 cut(s) 283, 1343, 1537
PspXI VCTCGAGB 1 cut(s) 2362
PstI CTGCAG 2 cut(s) 106, 233
PstNI CAGNNNCTG 2 cut(s) 549, 968
PsuI RGATCY 4 cut(s) 184, 499, 1136, 1384
PsyI GACNNNGTC 1 cut(s) 2882
SacI GAGCTC 2 cut(s) 206, 687
SalI GTCGAC 1 cut(s) 402
SaqAI TTAA 9 cut(s) 632, 998, 1725, 1733, 1815, 2253, 2261, 2315, 2940
SatI GCNGC 3 cut(s) 105, 1489, 2969
Sau3AI GATC 9 cut(s) 142, 184, 499, 1136, 1384, 1585, 2346, 2572, 2665
Sau96I GGNCC 3 cut(s) 283, 1343, 1537
ScaI AGTACT 2 cut(s) 1458, 1749
SchI GAGTC 6 cut(s) 279, 646, 2426, 3000, 3039, 3116
ScrFI CCNGG 7 cut(s) 287, 416, 550, 606, 969, 1361, 3070
SduI GDGCHC 6 cut(s) 89, 206, 687, 1813, 2023, 2062
SfaNI GCATC 5 cut(s) 843, 1603, 2452, 2666, 3024
SfcI CTRYAG 4 cut(s) 102, 229, 1281, 2709
Sfr274I CTCGAG 2 cut(s) 1977, 2362
SinI GGWCC 2 cut(s) 283, 1537
SlaI CTCGAG 2 cut(s) 1977, 2362
SmlI CTYRAG 6 cut(s) 390, 1298, 1814, 1977, 2080, 2362
SmoI CTYRAG 6 cut(s) 390, 1298, 1814, 1977, 2080, 2362
SnaBI TACGTA 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 1082
SphI GCATGC 2 cut(s) 1953, 2361
SsiI CCGC 3 cut(s) 450, 652, 2988
SspI AATATT 2 cut(s) 766, 892
SstI GAGCTC 2 cut(s) 206, 687
StyD4I CCNGG 7 cut(s) 285, 414, 548, 604, 967, 1359, 3068
StyI CCWWGG 2 cut(s) 2053, 2865
TaaI ACNGT 7 cut(s) 257, 479, 565, 964, 1317, 2165, 2242
TaiI ACGT 5 cut(s) 19, 412, 2558, 2895, 2980
TatI WGTACW 9 cut(s) 479, 805, 1079, 1395, 1456, 1661, 1747, 2590, 3110
TfiI GAWTC 7 cut(s) 98, 137, 211, 277, 363, 1783, 2153
Tru1I TTAA 9 cut(s) 632, 998, 1725, 1733, 1815, 2253, 2261, 2315, 2940
Tru9I TTAA 9 cut(s) 632, 998, 1725, 1733, 1815, 2253, 2261, 2315, 2940
TscAI CASTG 4 cut(s) 199, 482, 1572, 1891
TseI GCWGC 3 cut(s) 104, 1488, 2968
TspRI CASTG 4 cut(s) 199, 482, 1572, 1891
Tth111I GACNNNGTC 1 cut(s) 2882
Van91I CCANNNNNTGG 2 cut(s) 1433, 2887
Vha464I CTTAAG 1 cut(s) 1814
VneI GTGCAC 1 cut(s) 2019
VpaK11BI GGWCC 2 cut(s) 283, 1537
XagI CCTNNNNNAGG 1 cut(s) 1863
XbaI TCTAGA 2 cut(s) 917, 1243
XceI RCATGY 6 cut(s) 93, 252, 1396, 1953, 2361, 2830
XhoI CTCGAG 2 cut(s) 1977, 2362
XmiI GTMKAC 2 cut(s) 403, 1420
XmnI GAANNNNTTC 3 cut(s) 622, 710, 1873
ZrmI AGTACT 2 cut(s) 1458, 1749
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.