Rw3G010410

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
9990602 .. 9991301
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010410.1

Sequence Viewer

Length: 564 bp
ATGGTAGCCCATGTTGGTGACTTTGGTTTAGCAAGCTTCCTCTTCGAAGCATCAAATAATCATTCCAAAAGTCAGACCATGTCAGCTAGGCTAAAGGGTTCCATAGGCTACATTCCTCCTGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCAACGGACGAAATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGCCATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAACAGATGAGGATAAGGATGATGATGACAAATACAGCAATGATATACAAGAAAGGCCAATAGCCGGGTATCAAGATATAGGCCTAGTGAAAGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATGCAGATTGGTCTCTCATGCTCCACAGTATCACCAAGTGAGCGCATTCTCATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATTGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

187

Amino Acids

20.85

Weight (kDa)

4.95

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 76 5.5e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 83 8.6e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 125, 280, 374
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 306
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 3 cut(s) 36, 86, 168
AluI AGCT 3 cut(s) 36, 86, 168
Alw26I GTCTC 1 cut(s) 452
AoxI GGCC 3 cut(s) 206, 365, 391
AspLEI GCGC 1 cut(s) 480
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 4 cut(s) 29, 236, 459, 550
AsuII TTCGAA 1 cut(s) 45
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 3 cut(s) 87, 185, 395
BfmI CTRYAG 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 308, 376
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 308, 376
BmsI GCATC 2 cut(s) 59, 426
Bpu14I TTCGAA 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 280, 374
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 299, 355
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 140, 334
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 125, 280, 374
BseMI GCAATG 2 cut(s) 299, 355
BseNI ACTGG 1 cut(s) 247
BshFI GGCC 3 cut(s) 208, 367, 393
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 3 cut(s) 125, 280, 374
BsmAI GTCTC 1 cut(s) 452
BsmI GAATGC 3 cut(s) 240, 425, 480
BsnI GGCC 3 cut(s) 208, 367, 393
Bso31I GGTCTC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 258
BspANI GGCC 3 cut(s) 208, 367, 393
BspHI TCATGA 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 299, 355
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 275, 463
Bst6I CTCTTC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 140, 334
BstHHI GCGC 1 cut(s) 480
BstMAI GTCTC 1 cut(s) 452
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 306, 374
BstSFI CTRYAG 1 cut(s) 163
BsuRI GGCC 3 cut(s) 208, 367, 393
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 140, 334
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 486
CfoI GCGC 1 cut(s) 480
CviAII CATG 7 cut(s) 11, 79, 130, 259, 280, 453, 487
DdeI CTNAG 1 cut(s) 236
DraIII CACNNNGTG 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 452
Eco32I GATATC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 306
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 7 cut(s) 14, 82, 133, 262, 283, 456, 490
FatI CATG 7 cut(s) 10, 78, 129, 258, 279, 452, 486
FokI GGATG 2 cut(s) 147, 341
FspBI CTAG 3 cut(s) 87, 185, 395
GlaI GCGC 1 cut(s) 479
HaeIII GGCC 3 cut(s) 208, 367, 393
HapII CCGG 1 cut(s) 375
HhaI GCGC 1 cut(s) 480
Hin1II CATG 7 cut(s) 14, 82, 133, 262, 283, 456, 490
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 2 cut(s) 175, 524
HpaII CCGG 1 cut(s) 375
HphI GGTGA 4 cut(s) 29, 236, 459, 550
Hpy166II GTNNAC 4 cut(s) 195, 252, 292, 502
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 119, 383, 487
Hpy8I GTNNAC 4 cut(s) 195, 252, 292, 502
HpyCH4III ACNGT 2 cut(s) 275, 463
HpyCH4V TGCA 2 cut(s) 439, 515
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 7 cut(s) 14, 82, 133, 262, 283, 456, 490
HspAI GCGC 1 cut(s) 478
LmnI GCTCC 2 cut(s) 309, 461
LpnPI CCDG 8 cut(s) 132, 137, 183, 260, 282, 293, 320, 388
LweI GCATC 2 cut(s) 59, 426
MaeI CTAG 3 cut(s) 87, 185, 395
MaeIII GTNAC 2 cut(s) 17, 556
MboII GAAGA 2 cut(s) 34, 420
MluCI AATT 2 cut(s) 516, 536
MnlI CCTC 4 cut(s) 50, 126, 313, 409
MslI CAYNNNNRTG 4 cut(s) 15, 257, 485, 491
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 308, 376
Mva1269I GAATGC 3 cut(s) 240, 425, 480
MvaI CCWGG 1 cut(s) 308
NciI CCSGG 1 cut(s) 376
NcoI CCATGG 1 cut(s) 258
NlaIII CATG 7 cut(s) 14, 82, 133, 262, 283, 456, 490
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 17, 556
NspV TTCGAA 1 cut(s) 45
PagI TCATGA 1 cut(s) 486
PceI AGGCCT 1 cut(s) 393
PctI GAATGC 3 cut(s) 240, 425, 480
PfeI GAWTC 2 cut(s) 175, 524
PflFI GACNNNGTC 2 cut(s) 79, 275
PfoI TCCNGGA 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 100
PsyI GACNNNGTC 2 cut(s) 79, 275
RseI CAYNNNNRTG 4 cut(s) 15, 257, 485, 491
ScrFI CCNGG 2 cut(s) 308, 376
SetI ASST 4 cut(s) 38, 88, 170, 563
SfaNI GCATC 2 cut(s) 59, 426
SfcI CTRYAG 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 45
SmiMI CAYNNNNRTG 4 cut(s) 15, 257, 485, 491
Sse9I AATT 2 cut(s) 516, 536
SseBI AGGCCT 1 cut(s) 393
SspMI CTAG 3 cut(s) 87, 185, 395
StuI AGGCCT 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 306, 374
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 275, 463
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 516, 536
TfiI GAWTC 2 cut(s) 175, 524
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 2 cut(s) 17, 556
Tsp45I GTSAC 2 cut(s) 17, 556
TspDTI ATGAA 2 cut(s) 288, 503
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 438
Tth111I GACNNNGTC 2 cut(s) 79, 275
XspI CTAG 3 cut(s) 87, 185, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.