FvH4_6g13861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000310
Physical Location & Seq
Forward (+)
8494774 .. 8496243
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13861.t1

Sequence Viewer

Length: 432 bp
ATGTTAGGGGTTTATTGGGGTAGTAGGGGGTTCGTCGGAGGGTCTATTATAGGTAGTAAGGGGTCATGTCAGGGGTCAATTGGGGCAGTAGGAGGTCATGTTGGGGGTCTATTTGGGCACACGAACCTCGAGGCCGGAGAGCGCGATCCAAGCGGAGATCGGCTCGACGGCGGCGTCTTCGAAGAGGCTATGGCAGAAGGAGAGCTTGGTGAGGTTGGAGAGGGTGGCAATGTGAGTGTCCAAGGAGGAAGGCGGTTGACGGTGAGGTCTAGCTCGGTGAGACTCGGCGTGGTAGCGGTTTGGCGAGATGCAGAAAAACCAGACCTGAGCTTGGACCGGTTCCAGATCAAGATGGAGAAGCCGATCTACGACATGGTGGACGACGGCGAGTTTGGGCACTTGATCGATGACGACAACGGCCTTGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.0

Weight (kDa)

4.71

Isoelectric Point (pI)

20.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 173, 265
AbsI CCTCGAGG 1 cut(s) 128
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 153, 171, 253, 296
AclWI GGATC 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 336
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 205, 273, 330
AluI AGCT 3 cut(s) 205, 273, 330
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 2 cut(s) 132, 418
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AsiGI ACCGGT 1 cut(s) 336
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 221, 274, 289
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 334
BaeGI GKGCMC 2 cut(s) 120, 399
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbsI GAAGAC 1 cut(s) 169
BccI CCATC 1 cut(s) 346
BceAI ACGGC 2 cut(s) 184, 400
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 341
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 241, 421
BsaWI WCCGGW 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse118I RCCGGY 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 241, 421
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 317
BseSI GKGCMC 2 cut(s) 120, 399
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 134, 420
BshTI ACCGGT 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 135, 337
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 2 cut(s) 134, 420
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 120, 399
Bsp143I GATC 5 cut(s) 145, 157, 345, 363, 402
BspACI CCGC 4 cut(s) 153, 171, 253, 296
BspANI GGCC 2 cut(s) 134, 420
BspCNI CTCAG 1 cut(s) 318
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 241, 421
BssMI GATC 5 cut(s) 145, 157, 345, 363, 402
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 241, 421
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 326
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 5 cut(s) 148, 160, 348, 366, 405
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 5 cut(s) 145, 157, 345, 363, 402
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSLI GKGCMC 2 cut(s) 120, 399
BstUI CGCG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 2 cut(s) 134, 420
BsuTUI ATCGAT 1 cut(s) 405
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 163
CspAI ACCGGT 1 cut(s) 336
CviAII CATG 3 cut(s) 66, 98, 373
CviJI RGCY 8 cut(s) 134, 163, 188, 205, 273, 330, 361, 420
CviKI_1 RGCY 8 cut(s) 134, 163, 188, 205, 273, 330, 361, 420
DdeI CTNAG 1 cut(s) 326
DpnI GATC 5 cut(s) 147, 159, 347, 365, 404
DpnII GATC 5 cut(s) 145, 157, 345, 363, 402
DrdI GACNNNNNNGTC 2 cut(s) 173, 265
DseDI GACNNNNNNGTC 2 cut(s) 173, 265
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 241, 421
Eco47I GGWCC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 241, 421
ErhI CCWWGG 2 cut(s) 241, 421
FaeI CATG 3 cut(s) 69, 101, 376
FaiI YATR 5 cut(s) 50, 67, 99, 191, 374
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 3 cut(s) 65, 97, 372
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 134, 420
HapII CCGG 2 cut(s) 135, 337
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 69, 101, 376
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 1 cut(s) 282
HpaII CCGG 2 cut(s) 135, 337
HphI GGTGA 3 cut(s) 221, 274, 289
Hpy166II GTNNAC 2 cut(s) 258, 379
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 343, 349
Hpy8I GTNNAC 2 cut(s) 258, 379
Hpy99I CGWCG 3 cut(s) 38, 170, 386
HpyAV CCTTC 2 cut(s) 191, 243
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 69, 101, 376
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 5 cut(s) 145, 157, 345, 363, 402
LpnPI CCDG 6 cut(s) 56, 148, 333, 338, 350, 356
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 270
MalI GATC 5 cut(s) 147, 159, 347, 365, 404
MboI GATC 5 cut(s) 145, 157, 345, 363, 402
MboII GAAGA 2 cut(s) 169, 194
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 120, 399
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 2 cut(s) 16, 196
MnlI CCTC 9 cut(s) 32, 86, 124, 137, 178, 205, 214, 239, 258
MspI CCGG 2 cut(s) 135, 337
MunI CAATTG 1 cut(s) 78
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 5 cut(s) 145, 157, 345, 363, 402
NlaIII CATG 3 cut(s) 69, 101, 376
NlaIV GGNNCC 1 cut(s) 341
NmeAIII GCCGAG 1 cut(s) 264
NspV TTCGAA 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 128
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 5 cut(s) 145, 157, 345, 363, 402
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 276
SduI GDGCHC 2 cut(s) 120, 399
SetI ASST 9 cut(s) 55, 97, 129, 207, 216, 269, 275, 327, 332
SfaNI GCATC 1 cut(s) 298
Sfr274I CTCGAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 78
SsiI CCGC 4 cut(s) 153, 171, 253, 296
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 241, 421
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 4 cut(s) 129, 165, 180, 405
TasI AATT 1 cut(s) 78
TauI GCSGC 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.