DNA polymerase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 854 |
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 2 cut(s) | 185, 688 |
| AcsI | RAATTY | 2 cut(s) | 667, 736 |
| AfaI | GTAC | 3 cut(s) | 146, 407, 790 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 200 |
| AflIII | ACRYGT | 1 cut(s) | 214 |
| AgsI | TTSAA | 4 cut(s) | 142, 151, 469, 869 |
| AjnI | CCWGG | 2 cut(s) | 199, 580 |
| AleI | CACNNNNGTG | 1 cut(s) | 554 |
| AluBI | AGCT | 4 cut(s) | 246, 284, 616, 799 |
| AluI | AGCT | 4 cut(s) | 246, 284, 616, 799 |
| Alw26I | GTCTC | 2 cut(s) | 282, 514 |
| AlwI | GGATC | 2 cut(s) | 185, 688 |
| AoxI | GGCC | 2 cut(s) | 301, 537 |
| ApeKI | GCWGC | 4 cut(s) | 14, 413, 656, 796 |
| ApoI | RAATTY | 2 cut(s) | 667, 736 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 104, 136 |
| AspS9I | GGNCC | 1 cut(s) | 301 |
| AsuC2I | CCSGG | 1 cut(s) | 82 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 149, 182 |
| BauI | CACGAG | 1 cut(s) | 285 |
| BbsI | GAAGAC | 1 cut(s) | 857 |
| BbvCI | CCTCAGC | 1 cut(s) | 195 |
| BbvI | GCAGC | 4 cut(s) | 26, 425, 643, 808 |
| BccI | CCATC | 1 cut(s) | 614 |
| BceAI | ACGGC | 1 cut(s) | 67 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 59, 93 |
| BciT130I | CCWGG | 2 cut(s) | 201, 582 |
| BclI | TGATCA | 1 cut(s) | 741 |
| BcnI | CCSGG | 1 cut(s) | 82 |
| BcoDI | GTCTC | 2 cut(s) | 282, 514 |
| BfmI | CTRYAG | 1 cut(s) | 657 |
| BisI | GCNGC | 4 cut(s) | 15, 414, 657, 797 |
| BlpI | GCTNAGC | 1 cut(s) | 590 |
| BlsI | GCNGC | 4 cut(s) | 16, 415, 658, 798 |
| BmcAI | AGTACT | 1 cut(s) | 146 |
| Bme1390I | CCNGG | 3 cut(s) | 82, 201, 582 |
| BmgT120I | GGNCC | 1 cut(s) | 301 |
| BmrFI | CCNGG | 3 cut(s) | 82, 201, 582 |
| BmrI | ACTGGG | 2 cut(s) | 801, 895 |
| BmsI | GCATC | 2 cut(s) | 419, 524 |
| BmuI | ACTGGG | 2 cut(s) | 801, 895 |
| BpiI | GAAGAC | 1 cut(s) | 857 |
| BpmI | CTGGAG | 2 cut(s) | 113, 264 |
| Bpu10I | CCTNAGC | 1 cut(s) | 195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 590 |
| BpuEI | CTTGAG | 2 cut(s) | 712, 785 |
| BpuMI | CCSGG | 1 cut(s) | 82 |
| BsaBI | GATNNNNATC | 1 cut(s) | 746 |
| BsaI | GGTCTC | 1 cut(s) | 282 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 21, 51 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 200 |
| Bse1I | ACTGG | 4 cut(s) | 96, 379, 796, 901 |
| Bse3DI | GCAATG | 1 cut(s) | 408 |
| Bse8I | GATNNNNATC | 1 cut(s) | 746 |
| BseBI | CCWGG | 2 cut(s) | 201, 582 |
| BseGI | GGATG | 1 cut(s) | 434 |
| BseJI | GATNNNNATC | 1 cut(s) | 746 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BseMI | GCAATG | 1 cut(s) | 408 |
| BseMII | CTCAG | 3 cut(s) | 209, 579, 581 |
| BseNI | ACTGG | 4 cut(s) | 96, 379, 796, 901 |
| BseRI | GAGGAG | 1 cut(s) | 342 |
| BseXI | GCAGC | 4 cut(s) | 26, 425, 643, 808 |
| BsgI | GTGCAG | 1 cut(s) | 33 |
| BshFI | GGCC | 2 cut(s) | 303, 539 |
| BsiSI | CCGG | 2 cut(s) | 82, 678 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BsmAI | GTCTC | 2 cut(s) | 282, 514 |
| BsnI | GGCC | 2 cut(s) | 303, 539 |
| Bso31I | GGTCTC | 1 cut(s) | 282 |
| Bsp1407I | TGTACA | 1 cut(s) | 405 |
| Bsp143I | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 590 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspANI | GGCC | 2 cut(s) | 303, 539 |
| BspCNI | CTCAG | 3 cut(s) | 208, 578, 582 |
| BspHI | TCATGA | 1 cut(s) | 744 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspPI | GGATC | 2 cut(s) | 185, 688 |
| BspTNI | GGTCTC | 1 cut(s) | 282 |
| BsrDI | GCAATG | 1 cut(s) | 408 |
| BsrGI | TGTACA | 1 cut(s) | 405 |
| BsrI | ACTGG | 4 cut(s) | 96, 379, 796, 901 |
| BssMI | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| BssSI | CACGAG | 1 cut(s) | 285 |
| Bst2BI | CACGAG | 1 cut(s) | 285 |
| Bst2UI | CCWGG | 2 cut(s) | 201, 582 |
| Bst4CI | ACNGT | 1 cut(s) | 604 |
| Bst6I | CTCTTC | 1 cut(s) | 569 |
| BstAUI | TGTACA | 1 cut(s) | 405 |
| BstC8I | GCNNGC | 2 cut(s) | 707, 783 |
| BstDEI | CTNAG | 3 cut(s) | 195, 565, 590 |
| BstF5I | GGATG | 1 cut(s) | 434 |
| BstKTI | GATC | 5 cut(s) | 193, 309, 683, 744, 750 |
| BstMAI | GTCTC | 2 cut(s) | 282, 514 |
| BstMBI | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 20, 702 |
| BstNI | CCWGG | 2 cut(s) | 201, 582 |
| BstNSI | RCATGY | 3 cut(s) | 218, 785, 789 |
| BstSCI | CCNGG | 3 cut(s) | 80, 199, 580 |
| BstSFI | CTRYAG | 1 cut(s) | 657 |
| BstV1I | GCAGC | 4 cut(s) | 26, 425, 643, 808 |
| BstV2I | GAAGAC | 1 cut(s) | 857 |
| BsuRI | GGCC | 2 cut(s) | 303, 539 |
| BtsCI | GGATG | 1 cut(s) | 434 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 393 |
| Cac8I | GCNNGC | 2 cut(s) | 707, 783 |
| CciI | TCATGA | 1 cut(s) | 744 |
| Cfr13I | GGNCC | 1 cut(s) | 301 |
| Csp6I | GTAC | 3 cut(s) | 145, 406, 789 |
| CviAII | CATG | 7 cut(s) | 215, 310, 326, 745, 774, 782, 786 |
| CviQI | GTAC | 3 cut(s) | 145, 406, 789 |
| DdeI | CTNAG | 3 cut(s) | 195, 565, 590 |
| DpnI | GATC | 5 cut(s) | 192, 308, 682, 743, 749 |
| DpnII | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| DraI | TTTAAA | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 1 cut(s) | 569 |
| EarI | CTCTTC | 1 cut(s) | 569 |
| Eco31I | GGTCTC | 1 cut(s) | 282 |
| EcoRI | GAATTC | 1 cut(s) | 667 |
| EcoRII | CCWGG | 2 cut(s) | 199, 580 |
| EcoT22I | ATGCAT | 1 cut(s) | 787 |
| FaeI | CATG | 7 cut(s) | 218, 313, 329, 748, 777, 785, 789 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FatI | CATG | 7 cut(s) | 214, 309, 325, 744, 773, 781, 785 |
| FbaI | TGATCA | 1 cut(s) | 741 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 414, 657, 797 |
| FokI | GGATG | 1 cut(s) | 441 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 414, 657, 797 |
| GluI | GCNGC | 4 cut(s) | 15, 414, 657, 797 |
| GsuI | CTGGAG | 2 cut(s) | 113, 264 |
| HaeIII | GGCC | 2 cut(s) | 303, 539 |
| HapII | CCGG | 2 cut(s) | 82, 678 |
| Hin1II | CATG | 7 cut(s) | 218, 313, 329, 748, 777, 785, 789 |
| HincII | GTYRAC | 2 cut(s) | 235, 499 |
| HindII | GTYRAC | 2 cut(s) | 235, 499 |
| HindIII | AAGCTT | 1 cut(s) | 614 |
| HinfI | GANTC | 4 cut(s) | 391, 563, 577, 862 |
| HpaI | GTTAAC | 1 cut(s) | 499 |
| HpaII | CCGG | 2 cut(s) | 82, 678 |
| Hpy166II | GTNNAC | 4 cut(s) | 112, 235, 499, 645 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 568 |
| Hpy188III | TCNNGA | 3 cut(s) | 287, 691, 745 |
| Hpy8I | GTNNAC | 4 cut(s) | 112, 235, 499, 645 |
| HpyAV | CCTTC | 4 cut(s) | 203, 357, 409, 553 |
| HpyCH4III | ACNGT | 1 cut(s) | 604 |
| HpyCH4V | TGCA | 9 cut(s) | 14, 60, 329, 413, 432, 458, 515, 659, 785 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 20, 702 |
| HpyF3I | CTNAG | 3 cut(s) | 195, 565, 590 |
| Hsp92II | CATG | 7 cut(s) | 218, 313, 329, 748, 777, 785, 789 |
| Ksp22I | TGATCA | 1 cut(s) | 741 |
| KspAI | GTTAAC | 1 cut(s) | 499 |
| Kzo9I | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| Lsp1109I | GCAGC | 4 cut(s) | 26, 425, 643, 808 |
| LweI | GCATC | 2 cut(s) | 419, 524 |
| MaeIII | GTNAC | 3 cut(s) | 263, 451, 530 |
| MalI | GATC | 5 cut(s) | 192, 308, 682, 743, 749 |
| MboI | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| MboII | GAAGA | 2 cut(s) | 586, 857 |
| MfeI | CAATTG | 1 cut(s) | 869 |
| MluCI | AATT | 5 cut(s) | 447, 504, 667, 736, 869 |
| MlyI | GAGTC | 3 cut(s) | 557, 586, 871 |
| MmeI | TCCRAC | 1 cut(s) | 866 |
| MnlI | CCTC | 5 cut(s) | 204, 292, 314, 363, 694 |
| Mph1103I | ATGCAT | 1 cut(s) | 787 |
| MseI | TTAA | 3 cut(s) | 45, 498, 845 |
| MslI | CAYNNNNRTG | 3 cut(s) | 254, 314, 554 |
| MspA1I | CMGCKG | 1 cut(s) | 17 |
| MspI | CCGG | 2 cut(s) | 82, 678 |
| MspR9I | CCNGG | 3 cut(s) | 82, 201, 582 |
| MunI | CAATTG | 1 cut(s) | 869 |
| MvaI | CCWGG | 2 cut(s) | 201, 582 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 20, 702 |
| NciI | CCSGG | 1 cut(s) | 82 |
| NdeII | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| NlaIII | CATG | 7 cut(s) | 218, 313, 329, 748, 777, 785, 789 |
| NsiI | ATGCAT | 1 cut(s) | 787 |
| NspI | RCATGY | 3 cut(s) | 218, 785, 789 |
| OliI | CACNNNNGTG | 1 cut(s) | 554 |
| PaeI | GCATGC | 1 cut(s) | 785 |
| PagI | TCATGA | 1 cut(s) | 744 |
| PciI | ACATGT | 1 cut(s) | 214 |
| PfeI | GAWTC | 1 cut(s) | 391 |
| PkrI | GCNGC | 4 cut(s) | 16, 415, 658, 798 |
| PleI | GAGTC | 3 cut(s) | 557, 585, 870 |
| PpsI | GAGTC | 3 cut(s) | 557, 585, 870 |
| PscI | ACATGT | 1 cut(s) | 214 |
| PsiI | TTATAA | 1 cut(s) | 854 |
| Psp6I | CCWGG | 2 cut(s) | 199, 580 |
| PspGI | CCWGG | 2 cut(s) | 199, 580 |
| PspPI | GGNCC | 1 cut(s) | 301 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| RsaI | GTAC | 3 cut(s) | 146, 407, 790 |
| RsaNI | GTAC | 3 cut(s) | 145, 406, 789 |
| RseI | CAYNNNNRTG | 3 cut(s) | 254, 314, 554 |
| SaqAI | TTAA | 3 cut(s) | 45, 498, 845 |
| SatI | GCNGC | 4 cut(s) | 15, 414, 657, 797 |
| Sau3AI | GATC | 5 cut(s) | 190, 306, 680, 741, 747 |
| Sau96I | GGNCC | 1 cut(s) | 301 |
| ScaI | AGTACT | 1 cut(s) | 146 |
| SchI | GAGTC | 3 cut(s) | 557, 586, 871 |
| ScrFI | CCNGG | 3 cut(s) | 82, 201, 582 |
| SetI | ASST | 8 cut(s) | 174, 248, 286, 325, 618, 715, 801, 832 |
| SfaNI | GCATC | 2 cut(s) | 419, 524 |
| SfcI | CTRYAG | 1 cut(s) | 657 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 254, 314, 554 |
| SmlI | CTYRAG | 2 cut(s) | 691, 800 |
| SmoI | CTYRAG | 2 cut(s) | 691, 800 |
| SphI | GCATGC | 1 cut(s) | 785 |
| Sse9I | AATT | 5 cut(s) | 447, 504, 667, 736, 869 |
| SsiI | CCGC | 1 cut(s) | 17 |
| StyD4I | CCNGG | 3 cut(s) | 80, 199, 580 |
| TaaI | ACNGT | 1 cut(s) | 604 |
| TasI | AATT | 5 cut(s) | 447, 504, 667, 736, 869 |
| TatI | WGTACW | 3 cut(s) | 144, 405, 788 |
| TfiI | GAWTC | 1 cut(s) | 391 |
| Tru1I | TTAA | 3 cut(s) | 45, 498, 845 |
| Tru9I | TTAA | 3 cut(s) | 45, 498, 845 |
| TscAI | CASTG | 2 cut(s) | 114, 393 |
| TseI | GCWGC | 4 cut(s) | 14, 413, 656, 796 |
| TspDTI | ATGAA | 1 cut(s) | 372 |
| TspGWI | ACGGA | 1 cut(s) | 599 |
| TspRI | CASTG | 2 cut(s) | 114, 393 |
| XapI | RAATTY | 2 cut(s) | 667, 736 |
| XceI | RCATGY | 3 cut(s) | 218, 785, 789 |
| ZrmI | AGTACT | 1 cut(s) | 146 |
| Zsp2I | ATGCAT | 1 cut(s) | 787 |