DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_alpha_N | PF12254 | 2 - 46 | 1.6e-10 | DNA polymerase alpha subunit p180 N terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 161 |
| AccII | CGCG | 1 cut(s) | 147 |
| AciI | CCGC | 4 cut(s) | 61, 145, 147, 275 |
| AclWI | GGATC | 2 cut(s) | 423, 429 |
| AcyI | GRCGYC | 1 cut(s) | 158 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| AjiI | CACGTC | 1 cut(s) | 315 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| Alw26I | GTCTC | 1 cut(s) | 374 |
| AlwI | GGATC | 2 cut(s) | 423, 429 |
| AoxI | GGCC | 3 cut(s) | 100, 188, 239 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| AspA2I | CCTAGG | 1 cut(s) | 103 |
| AspS9I | GGNCC | 3 cut(s) | 138, 189, 240 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| AvrII | CCTAGG | 1 cut(s) | 103 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 209 |
| BbvI | GCAGC | 1 cut(s) | 348 |
| BccI | CCATC | 2 cut(s) | 56, 277 |
| BceAI | ACGGC | 3 cut(s) | 115, 220, 282 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BcoDI | GTCTC | 1 cut(s) | 374 |
| BfaI | CTAG | 1 cut(s) | 104 |
| BisI | GCNGC | 3 cut(s) | 145, 276, 362 |
| BlnI | CCTAGG | 1 cut(s) | 103 |
| BlsI | GCNGC | 3 cut(s) | 146, 277, 363 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmgBI | CACGTC | 1 cut(s) | 315 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 189, 240 |
| BmiI | GGNNCC | 2 cut(s) | 234, 439 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BmsI | GCATC | 2 cut(s) | 337, 413 |
| BpiI | GAAGAC | 1 cut(s) | 209 |
| BsaHI | GRCGYC | 1 cut(s) | 158 |
| BsaJI | CCNNGG | 4 cut(s) | 103, 145, 191, 236 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| Bse1I | ACTGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 4 cut(s) | 103, 145, 191, 236 |
| BseGI | GGATG | 1 cut(s) | 404 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| BseNI | ACTGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 1 cut(s) | 211 |
| BseXI | GCAGC | 1 cut(s) | 348 |
| Bsh1236I | CGCG | 1 cut(s) | 147 |
| BshFI | GGCC | 3 cut(s) | 102, 190, 241 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| BsmAI | GTCTC | 1 cut(s) | 374 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsnI | GGCC | 3 cut(s) | 102, 190, 241 |
| Bsp143I | GATC | 3 cut(s) | 12, 421, 428 |
| BspACI | CCGC | 4 cut(s) | 61, 145, 147, 275 |
| BspANI | GGCC | 3 cut(s) | 102, 190, 241 |
| BspFNI | CGCG | 1 cut(s) | 147 |
| BspHI | TCATGA | 1 cut(s) | 337 |
| BspLI | GGNNCC | 2 cut(s) | 234, 439 |
| BspPI | GGATC | 2 cut(s) | 423, 429 |
| BsrI | ACTGG | 1 cut(s) | 140 |
| BssECI | CCNNGG | 4 cut(s) | 103, 145, 191, 236 |
| BssMI | GATC | 3 cut(s) | 12, 421, 428 |
| BssNI | GRCGYC | 1 cut(s) | 158 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 208 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstACI | GRCGYC | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 1 cut(s) | 425 |
| BstDSI | CCRYGG | 2 cut(s) | 145, 236 |
| BstF5I | GGATG | 1 cut(s) | 404 |
| BstFNI | CGCG | 1 cut(s) | 147 |
| BstKTI | GATC | 3 cut(s) | 15, 424, 431 |
| BstMAI | GTCTC | 1 cut(s) | 374 |
| BstMBI | GATC | 3 cut(s) | 12, 421, 428 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 120, 247, 275 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstUI | CGCG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 1 cut(s) | 348 |
| BstV2I | GAAGAC | 1 cut(s) | 209 |
| BstX2I | RGATCY | 2 cut(s) | 421, 428 |
| BstYI | RGATCY | 2 cut(s) | 421, 428 |
| BsuRI | GGCC | 3 cut(s) | 102, 190, 241 |
| BtgI | CCRYGG | 2 cut(s) | 145, 236 |
| BtgZI | GCGATG | 2 cut(s) | 37, 293 |
| BtrI | CACGTC | 1 cut(s) | 315 |
| BtsCI | GGATG | 1 cut(s) | 404 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| CciI | TCATGA | 1 cut(s) | 337 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 189, 240 |
| Cfr42I | CCGCGG | 1 cut(s) | 148 |
| CviAII | CATG | 1 cut(s) | 338 |
| DdeI | CTNAG | 1 cut(s) | 425 |
| DpnI | GATC | 3 cut(s) | 14, 423, 430 |
| DpnII | GATC | 3 cut(s) | 12, 421, 428 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaeI | CATG | 1 cut(s) | 341 |
| FaiI | YATR | 6 cut(s) | 42, 111, 185, 339, 401, 435 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FatI | CATG | 1 cut(s) | 337 |
| FauI | CCCGC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 3 cut(s) | 145, 276, 362 |
| FokI | GGATG | 1 cut(s) | 391 |
| Fsp4HI | GCNGC | 3 cut(s) | 145, 276, 362 |
| FspBI | CTAG | 1 cut(s) | 104 |
| GluI | GCNGC | 3 cut(s) | 145, 276, 362 |
| HaeIII | GGCC | 3 cut(s) | 102, 190, 241 |
| Hin1I | GRCGYC | 1 cut(s) | 158 |
| Hin1II | CATG | 1 cut(s) | 341 |
| HincII | GTYRAC | 1 cut(s) | 162 |
| HindII | GTYRAC | 1 cut(s) | 162 |
| HinfI | GANTC | 1 cut(s) | 170 |
| Hpy166II | GTNNAC | 2 cut(s) | 162, 312 |
| Hpy188I | TCNGA | 1 cut(s) | 156 |
| Hpy188III | TCNNGA | 1 cut(s) | 338 |
| Hpy8I | GTNNAC | 2 cut(s) | 162, 312 |
| Hpy99I | CGWCG | 7 cut(s) | 98, 101, 160, 262, 307, 319, 322 |
| HpyAV | CCTTC | 1 cut(s) | 223 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 208 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 314 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 120, 247, 275 |
| HpyF3I | CTNAG | 1 cut(s) | 425 |
| HpySE526I | ACGT | 2 cut(s) | 158, 314 |
| Hsp92I | GRCGYC | 1 cut(s) | 158 |
| Hsp92II | CATG | 1 cut(s) | 341 |
| KspI | CCGCGG | 1 cut(s) | 148 |
| Kzo9I | GATC | 3 cut(s) | 12, 421, 428 |
| LmnI | GCTCC | 4 cut(s) | 63, 220, 232, 437 |
| LpnPI | CCDG | 5 cut(s) | 121, 154, 178, 205, 209 |
| Lsp1109I | GCAGC | 1 cut(s) | 348 |
| LweI | GCATC | 2 cut(s) | 337, 413 |
| MaeI | CTAG | 1 cut(s) | 104 |
| MaeII | ACGT | 2 cut(s) | 158, 314 |
| MalI | GATC | 3 cut(s) | 14, 423, 430 |
| MboI | GATC | 3 cut(s) | 12, 421, 428 |
| MboII | GAAGA | 2 cut(s) | 140, 214 |
| MflI | RGATCY | 2 cut(s) | 421, 428 |
| MluCI | AATT | 1 cut(s) | 253 |
| MmeI | TCCRAC | 1 cut(s) | 179 |
| MnlI | CCTC | 8 cut(s) | 25, 82, 118, 124, 180, 189, 192, 288 |
| MseI | TTAA | 1 cut(s) | 327 |
| MspA1I | CMGCKG | 2 cut(s) | 147, 275 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MvnI | CGCG | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 120, 247, 275 |
| NdeII | GATC | 3 cut(s) | 12, 421, 428 |
| NlaIII | CATG | 1 cut(s) | 341 |
| NlaIV | GGNNCC | 2 cut(s) | 234, 439 |
| PagI | TCATGA | 1 cut(s) | 337 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 93, 266, 311, 320 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 3 cut(s) | 146, 277, 363 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 2 cut(s) | 234, 439 |
| PspPI | GGNCC | 3 cut(s) | 138, 189, 240 |
| PsuI | RGATCY | 2 cut(s) | 421, 428 |
| SacII | CCGCGG | 1 cut(s) | 148 |
| SaqAI | TTAA | 1 cut(s) | 327 |
| SatI | GCNGC | 3 cut(s) | 145, 276, 362 |
| Sau3AI | GATC | 3 cut(s) | 12, 421, 428 |
| Sau96I | GGNCC | 3 cut(s) | 138, 189, 240 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SetI | ASST | 2 cut(s) | 161, 317 |
| SfaNI | GCATC | 2 cut(s) | 337, 413 |
| Sfr303I | CCGCGG | 1 cut(s) | 148 |
| SgrBI | CCGCGG | 1 cut(s) | 148 |
| SinI | GGWCC | 1 cut(s) | 138 |
| Sse9I | AATT | 1 cut(s) | 253 |
| SsiI | CCGC | 4 cut(s) | 61, 145, 147, 275 |
| SspMI | CTAG | 1 cut(s) | 104 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 2 cut(s) | 25, 208 |
| TaiI | ACGT | 2 cut(s) | 161, 317 |
| TaqI | TCGA | 3 cut(s) | 87, 173, 305 |
| TasI | AATT | 1 cut(s) | 253 |
| TauI | GCSGC | 2 cut(s) | 147, 278 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| Tru1I | TTAA | 1 cut(s) | 327 |
| Tru9I | TTAA | 1 cut(s) | 327 |
| TseI | GCWGC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 2 cut(s) | 73, 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 415 |
| XmaJI | CCTAGG | 1 cut(s) | 103 |
| XspI | CTAG | 1 cut(s) | 104 |
| ZraI | GACGTC | 1 cut(s) | 159 |