DNA polymerase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1682, 2063 |
| Acc36I | ACCTGC | 1 cut(s) | 1441 |
| AccB1I | GGYRCC | 2 cut(s) | 1390, 2095 |
| AccI | GTMKAC | 2 cut(s) | 237, 1209 |
| AclWI | GGATC | 7 cut(s) | 776, 1371, 1472, 1485, 1490, 2185, 2204 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcsI | RAATTY | 5 cut(s) | 610, 847, 1298, 1646, 1930 |
| AcyI | GRCGYC | 1 cut(s) | 62 |
| AfaI | GTAC | 4 cut(s) | 188, 257, 1162, 1452 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 42, 210, 793 |
| AflII | CTTAAG | 1 cut(s) | 1454 |
| AgeI | ACCGGT | 1 cut(s) | 1393 |
| AgsI | TTSAA | 9 cut(s) | 508, 671, 740, 857, 904, 1262, 1474, 1747, 2003 |
| AjiI | CACGTC | 1 cut(s) | 459 |
| AjnI | CCWGG | 3 cut(s) | 35, 1843, 2058 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 656, 688 |
| AleI | CACNNNNGTG | 1 cut(s) | 1817 |
| AluBI | AGCT | 9 cut(s) | 98, 1039, 1129, 1258, 1312, 1349, 1379, 1552, 2081 |
| AluI | AGCT | 9 cut(s) | 98, 1039, 1129, 1258, 1312, 1349, 1379, 1552, 2081 |
| Alw26I | GTCTC | 4 cut(s) | 171, 1690, 1777, 2132 |
| AlwI | GGATC | 7 cut(s) | 776, 1371, 1472, 1485, 1490, 2185, 2204 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1607 |
| Ama87I | CYCGRG | 1 cut(s) | 288 |
| AoxI | GGCC | 7 cut(s) | 66, 112, 247, 291, 383, 1800, 2122 |
| ApeKI | GCWGC | 3 cut(s) | 26, 999, 1312 |
| ApoI | RAATTY | 5 cut(s) | 610, 847, 1298, 1646, 1930 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 183, 215, 2150, 2182 |
| AseI | ATTAAT | 1 cut(s) | 1755 |
| AsiGI | ACCGGT | 1 cut(s) | 1393 |
| AspA2I | CCTAGG | 1 cut(s) | 250 |
| AspLEI | GCGC | 1 cut(s) | 550 |
| AsuC2I | CCSGG | 2 cut(s) | 289, 290 |
| AsuHPI | GGTGA | 3 cut(s) | 791, 979, 1900 |
| AsuII | TTCGAA | 1 cut(s) | 771 |
| AvaI | CYCGRG | 1 cut(s) | 288 |
| AvaII | GGWCC | 9 cut(s) | 53, 154, 220, 285, 296, 931, 1580, 2112, 2166 |
| AvrII | CCTAGG | 1 cut(s) | 250 |
| BamHI | GGATCC | 1 cut(s) | 1477 |
| BanI | GGYRCC | 2 cut(s) | 1390, 2095 |
| BanII | GRGCYC | 1 cut(s) | 82 |
| BbvI | GCAGC | 3 cut(s) | 13, 1011, 1299 |
| BccI | CCATC | 7 cut(s) | 142, 421, 757, 951, 977, 1058, 1877 |
| BceAI | ACGGC | 5 cut(s) | 39, 262, 334, 426, 2109 |
| BciT130I | CCWGG | 3 cut(s) | 37, 1845, 2060 |
| BcnI | CCSGG | 2 cut(s) | 289, 290 |
| BcoDI | GTCTC | 4 cut(s) | 171, 1690, 1777, 2132 |
| BfaI | CTAG | 3 cut(s) | 251, 1526, 2192 |
| BfmI | CTRYAG | 2 cut(s) | 1707, 1920 |
| BfrI | CTTAAG | 1 cut(s) | 1454 |
| BfuAI | ACCTGC | 1 cut(s) | 1441 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 111 |
| BlnI | CCTAGG | 1 cut(s) | 250 |
| BlpI | GCTNAGC | 1 cut(s) | 1853 |
| Bme1390I | CCNGG | 5 cut(s) | 37, 289, 290, 1845, 2060 |
| Bme18I | GGWCC | 9 cut(s) | 53, 154, 220, 285, 296, 931, 1580, 2112, 2166 |
| BmeT110I | CYCGRG | 1 cut(s) | 288 |
| BmgBI | CACGTC | 1 cut(s) | 459 |
| BmrFI | CCNGG | 5 cut(s) | 37, 289, 290, 1845, 2060 |
| BmrI | ACTGGG | 1 cut(s) | 1715 |
| BmsI | GCATC | 6 cut(s) | 1081, 1258, 1787, 1835, 1968, 2133 |
| BmuI | ACTGGG | 1 cut(s) | 1715 |
| BpmI | CTGGAG | 3 cut(s) | 996, 1458, 2202 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2082 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1853 |
| Bpu14I | TTCGAA | 1 cut(s) | 771 |
| BpuEI | CTTGAG | 2 cut(s) | 317, 2114 |
| BpuMI | CCSGG | 2 cut(s) | 289, 290 |
| Bsa29I | ATCGAT | 1 cut(s) | 1942 |
| BsaHI | GRCGYC | 1 cut(s) | 62 |
| BsaI | GGTCTC | 1 cut(s) | 1690 |
| BsaJI | CCNNGG | 8 cut(s) | 49, 106, 223, 250, 288, 380, 1899, 1911 |
| BsaWI | WCCGGW | 1 cut(s) | 1393 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 42, 210, 793 |
| Bse118I | RCCGGY | 2 cut(s) | 293, 1393 |
| Bse1I | ACTGG | 4 cut(s) | 133, 287, 979, 1721 |
| Bse3DI | GCAATG | 2 cut(s) | 666, 1052 |
| BseBI | CCWGG | 3 cut(s) | 37, 1845, 2060 |
| BseCI | ATCGAT | 1 cut(s) | 1942 |
| BseDI | CCNNGG | 8 cut(s) | 49, 106, 223, 250, 288, 380, 1899, 1911 |
| BseGI | GGATG | 7 cut(s) | 313, 559, 962, 988, 1273, 1289, 2068 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 42, 210, 793 |
| BseMI | GCAATG | 2 cut(s) | 666, 1052 |
| BseMII | CTCAG | 2 cut(s) | 1599, 1844 |
| BseNI | ACTGG | 4 cut(s) | 133, 287, 979, 1721 |
| BseRI | GAGGAG | 3 cut(s) | 80, 592, 848 |
| BseX3I | CGGCCG | 1 cut(s) | 112 |
| BseXI | GCAGC | 3 cut(s) | 13, 1011, 1299 |
| BsgI | GTGCAG | 2 cut(s) | 740, 1298 |
| Bsh1285I | CGRYCG | 1 cut(s) | 115 |
| BshFI | GGCC | 7 cut(s) | 68, 114, 249, 293, 385, 1802, 2124 |
| BshNI | GGYRCC | 2 cut(s) | 1390, 2095 |
| BshTI | ACCGGT | 1 cut(s) | 1393 |
| BshVI | ATCGAT | 1 cut(s) | 1942 |
| BsiEI | CGRYCG | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 288 |
| BsiSI | CCGG | 5 cut(s) | 75, 289, 294, 551, 1394 |
| BslFI | GGGAC | 2 cut(s) | 34, 597 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 42, 210, 793 |
| BsmAI | GTCTC | 4 cut(s) | 171, 1690, 1777, 2132 |
| BsmBI | CGTCTC | 2 cut(s) | 171, 2132 |
| BsmFI | GGGAC | 2 cut(s) | 34, 597 |
| BsmI | GAATGC | 1 cut(s) | 910 |
| BsnI | GGCC | 7 cut(s) | 68, 114, 249, 293, 385, 1802, 2124 |
| Bso31I | GGTCTC | 1 cut(s) | 1690 |
| BsoBI | CYCGRG | 1 cut(s) | 288 |
| Bsp119I | TTCGAA | 1 cut(s) | 771 |
| Bsp1286I | GDGCHC | 1 cut(s) | 82 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1853 |
| Bsp19I | CCATGG | 2 cut(s) | 106, 1899 |
| BspANI | GGCC | 7 cut(s) | 68, 114, 249, 293, 385, 1802, 2124 |
| BspCNI | CTCAG | 2 cut(s) | 1600, 1845 |
| BspDI | ATCGAT | 1 cut(s) | 1942 |
| BspHI | TCATGA | 1 cut(s) | 1251 |
| BspMAI | CTGCAG | 1 cut(s) | 1711 |
| BspMI | ACCTGC | 1 cut(s) | 1441 |
| BspPI | GGATC | 7 cut(s) | 776, 1371, 1472, 1485, 1490, 2185, 2204 |
| BspQI | GCTCTTC | 2 cut(s) | 1029, 1527 |
| BspT104I | TTCGAA | 1 cut(s) | 771 |
| BspT107I | GGYRCC | 2 cut(s) | 1390, 2095 |
| BspTI | CTTAAG | 1 cut(s) | 1454 |
| BspTNI | GGTCTC | 1 cut(s) | 1690 |
| BsrDI | GCAATG | 2 cut(s) | 666, 1052 |
| BsrFI | RCCGGY | 2 cut(s) | 293, 1393 |
| BsrI | ACTGG | 4 cut(s) | 133, 287, 979, 1721 |
| BssAI | RCCGGY | 2 cut(s) | 293, 1393 |
| BssECI | CCNNGG | 8 cut(s) | 49, 106, 223, 250, 288, 380, 1899, 1911 |
| BssNI | GRCGYC | 1 cut(s) | 62 |
| BssT1I | CCWWGG | 4 cut(s) | 106, 250, 1899, 1911 |
| Bst2UI | CCWGG | 3 cut(s) | 37, 1845, 2060 |
| Bst4CI | ACNGT | 7 cut(s) | 172, 1226, 1241, 1621, 1867, 1991, 2021 |
| Bst6I | CTCTTC | 8 cut(s) | 210, 270, 852, 882, 1029, 1095, 1269, 1527 |
| BstACI | GRCGYC | 1 cut(s) | 62 |
| BstAFI | CTTAAG | 1 cut(s) | 1454 |
| BstBI | TTCGAA | 1 cut(s) | 771 |
| BstC8I | GCNNGC | 3 cut(s) | 1127, 1850, 2136 |
| BstDEI | CTNAG | 5 cut(s) | 1350, 1608, 1853, 1955, 2082 |
| BstDSI | CCRYGG | 2 cut(s) | 106, 1899 |
| BstF5I | GGATG | 7 cut(s) | 313, 559, 962, 988, 1273, 1289, 2068 |
| BstHHI | GCGC | 1 cut(s) | 550 |
| BstMAI | GTCTC | 4 cut(s) | 171, 1690, 1777, 2132 |
| BstMCI | CGRYCG | 1 cut(s) | 115 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 32, 111, 200, 267, 419, 545, 1854, 1965 |
| BstNI | CCWGG | 3 cut(s) | 37, 1845, 2060 |
| BstNSI | RCATGY | 2 cut(s) | 1198, 1852 |
| BstSCI | CCNGG | 5 cut(s) | 35, 287, 288, 1843, 2058 |
| BstSFI | CTRYAG | 2 cut(s) | 1707, 1920 |
| BstV1I | GCAGC | 3 cut(s) | 13, 1011, 1299 |
| BstX2I | RGATCY | 3 cut(s) | 1477, 1495, 2177 |
| BstYI | RGATCY | 3 cut(s) | 1477, 1495, 2177 |
| BstZI | CGGCCG | 1 cut(s) | 112 |
| Bsu15I | ATCGAT | 1 cut(s) | 1942 |
| BsuRI | GGCC | 7 cut(s) | 68, 114, 249, 293, 385, 1802, 2124 |
| BsuTUI | ATCGAT | 1 cut(s) | 1942 |
| BtgI | CCRYGG | 2 cut(s) | 106, 1899 |
| BtgZI | GCGATG | 2 cut(s) | 276, 437 |
| BtrI | CACGTC | 1 cut(s) | 459 |
| BtsCI | GGATG | 7 cut(s) | 313, 559, 962, 988, 1273, 1289, 2068 |
| BtsI | GCAGTG | 2 cut(s) | 1070, 1546 |
| BtsIMutI | CAGTG | 5 cut(s) | 1070, 1246, 1546, 1728, 2026 |
| BveI | ACCTGC | 1 cut(s) | 1441 |
| Cac8I | GCNNGC | 3 cut(s) | 1127, 1850, 2136 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1607 |
| CciI | TCATGA | 1 cut(s) | 1251 |
| CciNI | GCGGCCGC | 1 cut(s) | 112 |
| CfoI | GCGC | 1 cut(s) | 550 |
| Cfr10I | RCCGGY | 2 cut(s) | 293, 1393 |
| Cfr9I | CCCGGG | 1 cut(s) | 288 |
| ClaI | ATCGAT | 1 cut(s) | 1942 |
| CpoI | CGGWCCG | 1 cut(s) | 296 |
| CseI | GACGC | 1 cut(s) | 51 |
| Csp6I | GTAC | 4 cut(s) | 187, 256, 1161, 1451 |
| CspAI | ACCGGT | 1 cut(s) | 1393 |
| CspI | CGGWCCG | 1 cut(s) | 296 |
| CviQI | GTAC | 4 cut(s) | 187, 256, 1161, 1451 |
| DdeI | CTNAG | 5 cut(s) | 1350, 1608, 1853, 1955, 2082 |
| DraI | TTTAAA | 1 cut(s) | 1335 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1682, 2063 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1682, 2063 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| EagI | CGGCCG | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 8 cut(s) | 210, 270, 852, 882, 1029, 1095, 1269, 1527 |
| EarI | CTCTTC | 8 cut(s) | 210, 270, 852, 882, 1029, 1095, 1269, 1527 |
| EciI | GGCGGA | 3 cut(s) | 20, 58, 92 |
| EclXI | CGGCCG | 1 cut(s) | 112 |
| Eco130I | CCWWGG | 4 cut(s) | 106, 250, 1899, 1911 |
| Eco24I | GRGCYC | 1 cut(s) | 82 |
| Eco31I | GGTCTC | 1 cut(s) | 1690 |
| Eco32I | GATATC | 1 cut(s) | 1287 |
| Eco47I | GGWCC | 9 cut(s) | 53, 154, 220, 285, 296, 931, 1580, 2112, 2166 |
| Eco52I | CGGCCG | 1 cut(s) | 112 |
| Eco88I | CYCGRG | 1 cut(s) | 288 |
| EcoO109I | RGGNCCY | 2 cut(s) | 931, 1580 |
| EcoRI | GAATTC | 3 cut(s) | 610, 1298, 1930 |
| EcoRII | CCWGG | 3 cut(s) | 35, 1843, 2058 |
| EcoRV | GATATC | 1 cut(s) | 1287 |
| EcoT14I | CCWWGG | 4 cut(s) | 106, 250, 1899, 1911 |
| EcoT22I | ATGCAT | 1 cut(s) | 1414 |
| EcoT38I | GRGCYC | 1 cut(s) | 82 |
| ErhI | CCWWGG | 4 cut(s) | 106, 250, 1899, 1911 |
| Esp3I | CGTCTC | 2 cut(s) | 171, 2132 |
| FaqI | GGGAC | 2 cut(s) | 34, 597 |
| FauI | CCCGC | 1 cut(s) | 125 |
| FblI | GTMKAC | 2 cut(s) | 237, 1209 |
| FokI | GGATG | 7 cut(s) | 320, 566, 969, 995, 1276, 1280, 2075 |
| FriOI | GRGCYC | 1 cut(s) | 82 |
| FspBI | CTAG | 3 cut(s) | 251, 1526, 2192 |
| GlaI | GCGC | 1 cut(s) | 549 |
| GsuI | CTGGAG | 3 cut(s) | 996, 1458, 2202 |
| HaeIII | GGCC | 7 cut(s) | 68, 114, 249, 293, 385, 1802, 2124 |
| HapII | CCGG | 5 cut(s) | 75, 289, 294, 551, 1394 |
| HgaI | GACGC | 1 cut(s) | 51 |
| HhaI | GCGC | 1 cut(s) | 550 |
| Hin1I | GRCGYC | 1 cut(s) | 62 |
| Hin6I | GCGC | 1 cut(s) | 548 |
| HinP1I | GCGC | 1 cut(s) | 548 |
| HincII | GTYRAC | 1 cut(s) | 238 |
| HindII | GTYRAC | 1 cut(s) | 238 |
| HindIII | AAGCTT | 2 cut(s) | 1127, 1256 |
| HinfI | GANTC | 4 cut(s) | 159, 311, 701, 1277 |
| HpaII | CCGG | 5 cut(s) | 75, 289, 294, 551, 1394 |
| HphI | GGTGA | 3 cut(s) | 791, 979, 1900 |
| Hpy166II | GTNNAC | 6 cut(s) | 238, 456, 1070, 1210, 1836, 1877 |
| Hpy188III | TCNNGA | 7 cut(s) | 145, 334, 349, 472, 1252, 1293, 2181 |
| Hpy8I | GTNNAC | 6 cut(s) | 238, 456, 1070, 1210, 1836, 1877 |
| Hpy99I | CGWCG | 9 cut(s) | 14, 67, 176, 185, 213, 239, 242, 406, 463 |
| HpyAV | CCTTC | 9 cut(s) | 337, 658, 725, 751, 815, 955, 1138, 1593, 2078 |
| HpyCH4III | ACNGT | 7 cut(s) | 172, 1226, 1241, 1621, 1867, 1991, 2021 |
| HpyCH4IV | ACGT | 1 cut(s) | 458 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 32, 111, 200, 267, 419, 545, 1854, 1965 |
| HpyF3I | CTNAG | 5 cut(s) | 1350, 1608, 1853, 1955, 2082 |
| HpySE526I | ACGT | 1 cut(s) | 458 |
| Hsp92I | GRCGYC | 1 cut(s) | 62 |
| HspAI | GCGC | 1 cut(s) | 548 |
| LguI | GCTCTTC | 2 cut(s) | 1029, 1527 |
| LmnI | GCTCC | 5 cut(s) | 45, 77, 1549, 1720, 2183 |
| Lsp1109I | GCAGC | 3 cut(s) | 13, 1011, 1299 |
| LweI | GCATC | 6 cut(s) | 1081, 1258, 1787, 1835, 1968, 2133 |
| MaeI | CTAG | 3 cut(s) | 251, 1526, 2192 |
| MaeII | ACGT | 1 cut(s) | 458 |
| MaeIII | GTNAC | 4 cut(s) | 1340, 1729, 1793, 2249 |
| MfeI | CAATTG | 2 cut(s) | 195, 789 |
| MflI | RGATCY | 3 cut(s) | 1477, 1495, 2177 |
| MhlI | GDGCHC | 1 cut(s) | 82 |
| MlyI | GAGTC | 1 cut(s) | 1286 |
| MmeI | TCCRAC | 5 cut(s) | 154, 1341, 1527, 1995, 2014 |
| Mph1103I | ATGCAT | 1 cut(s) | 1414 |
| MseI | TTAA | 9 cut(s) | 621, 915, 1334, 1398, 1455, 1563, 1662, 1755, 2258 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1242, 1539, 1817, 1831, 2239 |
| MspCI | CTTAAG | 1 cut(s) | 1454 |
| MspI | CCGG | 5 cut(s) | 75, 289, 294, 551, 1394 |
| MspR9I | CCNGG | 5 cut(s) | 37, 289, 290, 1845, 2060 |
| MunI | CAATTG | 2 cut(s) | 195, 789 |
| Mva1269I | GAATGC | 1 cut(s) | 910 |
| MvaI | CCWGG | 3 cut(s) | 37, 1845, 2060 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 32, 111, 200, 267, 419, 545, 1854, 1965 |
| NciI | CCSGG | 2 cut(s) | 289, 290 |
| NcoI | CCATGG | 2 cut(s) | 106, 1899 |
| NmeAIII | GCCGAG | 2 cut(s) | 74, 361 |
| NmuCI | GTSAC | 3 cut(s) | 1340, 1793, 2249 |
| NotI | GCGGCCGC | 1 cut(s) | 112 |
| NsiI | ATGCAT | 1 cut(s) | 1414 |
| NspI | RCATGY | 2 cut(s) | 1198, 1852 |
| NspV | TTCGAA | 1 cut(s) | 771 |
| OliI | CACNNNNGTG | 1 cut(s) | 1817 |
| PaeI | GCATGC | 1 cut(s) | 1852 |
| PagI | TCATGA | 1 cut(s) | 1251 |
| PciSI | GCTCTTC | 2 cut(s) | 1029, 1527 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 180, 186, 455, 1968 |
| PctI | GAATGC | 1 cut(s) | 910 |
| PfeI | GAWTC | 3 cut(s) | 159, 311, 701 |
| PinAI | ACCGGT | 1 cut(s) | 1393 |
| PleI | GAGTC | 1 cut(s) | 1285 |
| PpsI | GAGTC | 1 cut(s) | 1285 |
| PpuMI | RGGWCCY | 2 cut(s) | 931, 1580 |
| PshBI | ATTAAT | 1 cut(s) | 1755 |
| Psp5II | RGGWCCY | 2 cut(s) | 931, 1580 |
| Psp6I | CCWGG | 3 cut(s) | 35, 1843, 2058 |
| PspGI | CCWGG | 3 cut(s) | 35, 1843, 2058 |
| PspPPI | RGGWCCY | 2 cut(s) | 931, 1580 |
| PstI | CTGCAG | 1 cut(s) | 1711 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1607 |
| PsuI | RGATCY | 3 cut(s) | 1477, 1495, 2177 |
| RsaI | GTAC | 4 cut(s) | 188, 257, 1162, 1452 |
| RsaNI | GTAC | 4 cut(s) | 187, 256, 1161, 1451 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1242, 1539, 1817, 1831, 2239 |
| Rsr2I | CGGWCCG | 1 cut(s) | 296 |
| RsrII | CGGWCCG | 1 cut(s) | 296 |
| SalI | GTCGAC | 1 cut(s) | 236 |
| SapI | GCTCTTC | 2 cut(s) | 1029, 1527 |
| SaqAI | TTAA | 9 cut(s) | 621, 915, 1334, 1398, 1455, 1563, 1662, 1755, 2258 |
| SchI | GAGTC | 1 cut(s) | 1286 |
| ScrFI | CCNGG | 5 cut(s) | 37, 289, 290, 1845, 2060 |
| SduI | GDGCHC | 1 cut(s) | 82 |
| SfaNI | GCATC | 6 cut(s) | 1081, 1258, 1787, 1835, 1968, 2133 |
| SfcI | CTRYAG | 2 cut(s) | 1707, 1920 |
| SfuI | TTCGAA | 1 cut(s) | 771 |
| SgrDI | CGTCGACG | 1 cut(s) | 236 |
| SinI | GGWCC | 9 cut(s) | 53, 154, 220, 285, 296, 931, 1580, 2112, 2166 |
| SmaI | CCCGGG | 1 cut(s) | 290 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1242, 1539, 1817, 1831, 2239 |
| SmlI | CTYRAG | 3 cut(s) | 332, 1454, 2129 |
| SmoI | CTYRAG | 3 cut(s) | 332, 1454, 2129 |
| SphI | GCATGC | 1 cut(s) | 1852 |
| SspMI | CTAG | 3 cut(s) | 251, 1526, 2192 |
| StyD4I | CCNGG | 5 cut(s) | 35, 287, 288, 1843, 2058 |
| StyI | CCWWGG | 4 cut(s) | 106, 250, 1899, 1911 |
| TaaI | ACNGT | 7 cut(s) | 172, 1226, 1241, 1621, 1867, 1991, 2021 |
| TaiI | ACGT | 1 cut(s) | 461 |
| TaqII | GACCGA | 1 cut(s) | 171 |
| TatI | WGTACW | 2 cut(s) | 1160, 1450 |
| TauI | GCSGC | 7 cut(s) | 43, 114, 117, 324, 416, 419, 422 |
| TfiI | GAWTC | 3 cut(s) | 159, 311, 701 |
| Tru1I | TTAA | 9 cut(s) | 621, 915, 1334, 1398, 1455, 1563, 1662, 1755, 2258 |
| Tru9I | TTAA | 9 cut(s) | 621, 915, 1334, 1398, 1455, 1563, 1662, 1755, 2258 |
| TscAI | CASTG | 5 cut(s) | 1077, 1246, 1546, 1728, 2026 |
| TseFI | GTSAC | 3 cut(s) | 1340, 1793, 2249 |
| TseI | GCWGC | 3 cut(s) | 26, 999, 1312 |
| Tsp45I | GTSAC | 3 cut(s) | 1340, 1793, 2249 |
| TspGWI | ACGGA | 3 cut(s) | 288, 1862, 2063 |
| TspMI | CCCGGG | 1 cut(s) | 288 |
| TspRI | CASTG | 5 cut(s) | 1077, 1246, 1546, 1728, 2026 |
| Vha464I | CTTAAG | 1 cut(s) | 1454 |
| VpaK11BI | GGWCC | 9 cut(s) | 53, 154, 220, 285, 296, 931, 1580, 2112, 2166 |
| VspI | ATTAAT | 1 cut(s) | 1755 |
| XapI | RAATTY | 5 cut(s) | 610, 847, 1298, 1646, 1930 |
| XceI | RCATGY | 2 cut(s) | 1198, 1852 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2106 |
| XmaI | CCCGGG | 1 cut(s) | 288 |
| XmaJI | CCTAGG | 1 cut(s) | 250 |
| XmiI | GTMKAC | 2 cut(s) | 237, 1209 |
| XspI | CTAG | 3 cut(s) | 251, 1526, 2192 |
| Zsp2I | ATGCAT | 1 cut(s) | 1414 |