Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

31003455 .. 31013317

Gene Structure 9863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4185 bp

ATGGCGGACGACGAGCAACCGATCGTGACAGGGAGGCGCCGGAGCCGAGGAGCCGAGGCGTCGGCCCGGTCCAGCGCTCTGGAGCGCCTCCGAGCTCTCCGGCAAGGCGGCCGTCGCTCTGAAAACGCCGAAGACCGGTTCCAGATCAAGATGGAGAAGCCGATCTATGACACGGTCGACGAGGACGAGTACGACGCGATCATCGCCAAGCGCCGCGAGGAGTTCGGGGACTTCATCGACGACGACGACGGCCTAGGGTACCGCGACGACGGCGAGGAAGAGGACTGGACCCGCCGCGGGCTTCCGACGTCGTCGGATGAATCGGACGGCGATATGAGGCCCAGGAGGAGGAAGAAGGTGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGCCGCGGCCCAGAAAGCACAATTCGTCGCTTACTGCGGCGGCTGCGATGATAGGGAAGCAGAGGCTTTCGTCGATGTTCACGTCGTCGGTGTTTAATAAAAGTAGGGATGGTGACAAGGCCAAAGGATTGTCTTGTGATAGCATTGTGGATGATGTGATTGCCGAGTTTGCGCCGGACGAGGCTGATAGAGAGAAACGGAGGAGGGCACAGCCGGCGAGGAGTTTTGTTCCGATTGCCGGTGTTAAGAGTGAGAGAGTGAGTAATGGGGGTGTTGAGTTATCAAGGAGGCTTGAATTGGATAGAATTGTTGCAAATGGTAGTGGTTCTGTGCATTGTAAGGAAATGGATAAAGATTCTGAGGGCAATAAAGAGTTGGATTTCGGAAATTGTCAGCCCCAAATTGAGCAATTCCATGATTTTTTGGAGAATAGTGAGGTGCCCGAGGAGAAGAAGACTGAGGATTCTGCTGAGGTGCAGGCGGAGCCTGTGGTGAAGAAGGAAGAGGTTTTCACTTTGAATGCAAAGATTAAGGAAGATGAGGATCCGGCATTGAGTGCTATGGCAGGATGGAAGGCCGCGATGACTGGTGGGGCCGGGGTTACTGGTGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTCGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGAGTTGTTGTGCAGTTGTAAAGAACATGCAAAGATGTGTCTATGCAATACCGGACAGTCCTTTATTTCAAACTGACGAAATGATGAAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGAACCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGTGAAAGGGCTTTGCTAAACCGTTTGTTCATTGAATTATACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATATCTGGATTTGATCTGGATGTTCTTCTCCACAGAGCTCAGGTTTGCAGAGTGCCAAGCAGCATGTGGTCCAAAATAGGCCGCCTCAAGCGTTCTGTGATGCCTAAGCTTGCAAAAGGAAGCACCATTTTTGGCTCTGGAGCAAGTCCAGGGATCATGTCCTGCATTGCTGGTCGGCTGTTGTGTGATACATATTTGTGTTCCCGTGACTTATTAAAGGAGGTCAGCTATTCCTTGACACAACTTGCACAGACTCAGCTGGGCCAAAACCGGAAGGAGATCACACCGCATGATATTCCTAGAATGTTACAAAAATCTGAGTTTCTCATGGAACTTATTGAATATGGCGAGACAGATGCCTGGTTGTCTATGGGACTCATGTTTCATTTGAGTGCTCTTCCCCTCACACGTCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTCCAAGGTGCAAGGGCACAAAGAGTAGAATATCTCTTACTGCATGCTTTTCATGCAAAAAAGTATATTGTTCCAGACAAGATTCCTCATCTGAAGGATACCAAATTGACAAAACGGAGAACAAATAAGGGTGTTGAGGAAAAAGCTGCTGATGAGTTGGATGTAAATGATGTAAATGTTGATAATGATGCACAGAGTGGTCATGGAAAAGGCAAGAAAGGTCCTGCCTATGCTGGTGGATTGGTATTGGAGCCAAAAAAAGGTTTATATGACAAGTATATATTACTTCTGGACTTCAATAGTCTTTACCCGTCTATTATTCAGGAATACAATATATGCTTCACAACTGTTGAAAGAAATTCAGAAGGATTAGTTTCTCATTTACCTTCTAGTCAAAGACCTGGACTTTTACCTGAGTTGTTAAAAAATTTAGTTGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGAATGCATCTGGTCTCAAGTTCCAGCAACTTGACATTCAACAGCAAGCTCTGAAGCTGACTGCAAACAGTATGTATGGATGCTTGGGATTTTCAAACTCAAGATTTTATGCAAAGCCACTGGCAGAGCTTATAACACTACGGGGCAGGGAGATCCTACAAAGTACTGTGGATCTTGTTCAGAACAATTTGAACTTAGAGGTAATCTATGGTGATACGGACTCAATAATGATTTATAGTGGGCTGGATGATAGTGCGAAAGCAAAAGCAATTGCTGTGAAAGTAATTCAAGAGGTTAACAAGAAGTATAGATGTTTAGAAATTGATCTTGACGGCTTGTACAAGAGAATGCTGCTTCTCAAGAAAAAGAAATATGCGGCTGTGAAGGAGCTAACGAAAAACGAGAAAAAATACGAGGTTATCGAGTGTAAGGGCCTTGATATGGTACGTCGTGACTGGAGTTTACTTTCAAAGGAACTGGGAGATTTCTGCTTAAGTCAAATTTTGTCAGGAGGGTCATCTGAAGATGTTGTTGAATCAATTCATAACTCTCTTACAAAGGTGCAAGAGGACATGAGAAAAGGACAAGTTGCCCTCGAGAAATATATCATCACCAAGACATTAACTAAACCACCAGAAGCCTACCCAGATGGCAAAAACCAGCCACATGTTCAAGTGGCGCAAAGATTGAGGCAAAGTGGTTACTCTACTGGTTGCTCTGTTGGAGATACAGTCCCTTATATTATTTGCTGTGAGCAGGGCACAAGTTCAGATAATTCTACCGGGATTGCTCAACGTGCTAGACATCCTGATGAACTAAAACAAGAAGATGGAAGATGGATGATTGACATTGATTACTACTTGTCCCAACAGATTCATCCTGTTGTATCACGACTTTGTGCTTCAATTCAGGGTACCAGCCCCCAACGCTTGGCTGATTGTTTAGGGATTGACTCATCCAAGTTCAAATCGAATTCAAGTGAAGCTGTCAGAAATGATTCTTCCAGCTTGTTCTTTTCTGTTGACGATGAAGAGAGATATCGGGATTGTGAGTCTTTGATCTTAGCATGTCCTAGCTGCTCTGGTACTTTTGATTGTCCAGCCATCTTCAACTCCATTGCCAAGTCAATCAATGAAAAGCCAACAAGGCCACAAGGAGAAGAATCTTCTAGCGATTTTTGGTGCAGATTGCGCTGTCCAAAATGCCCAGAGGAAGGTGATGTGGGCAGACTGTCTCCTGTAATGATAGCCAATCAGGTCAAAAGGCAAGCAGAGGGTTTTGTTTCAACGTACTACAGGGGCATAACGATGTGTGATGATGAAACTTGCAAATACACCACACGAAGTCTCAACCTCCGGCTTGTTGGTGATGCTGAGAGAGGAACAGTCTGTCCAAACTATCCTCGCTGCAATGGGCATCTTGTAAGAAAGTACACGGAAGCTGATTTGTACAAACAGCTCTCATTTTTCTGCCATGTCTTGGATACAGTACGCTGCGTAGAAAAGATGGAACCTAAGACTAGACTGCCGGTAGAGTTAGAGTTGGCCAAAATTCGCCCCATTGTGACTTTGGCTGCCTCAACAGTTGAAAGGATTCGGGACCGTTGTGCCTACGGGTGGATACAGCTGCAAGATCTTTTTGTTACGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

1394

Amino Acids

156.44

Weight (kDa)

6.32

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_alpha_N	PF12254	27 - 96	2.7e-19	DNA polymerase alpha subunit p180 N terminal
DNA_pol_B_exo1	PF03104	512 - 619	4.7e-12	DNA polymerase family B, exonuclease domain
DNA_pol_B	PF00136	685 - 1147	8.1e-126	DNA polymerase family B
zf-DNA_Pol	PF08996	1185 - 1391	3.9e-43	DNA Polymerase alpha zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2666
AatII	GACGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	1444
Acc65I	GGTACC	2 cut(s)	258, 3446
AccB1I	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3446
AccB7I	CCANNNNNTGG	2 cut(s)	3463, 4012
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	6 cut(s)	197, 216, 264, 297, 394, 968
AclWI	GGATC	6 cut(s)	926, 939, 1374, 1778, 2680, 2712
AcoI	YGGCCR	2 cut(s)	109, 4077
AcsI	RAATTY	5 cut(s)	2425, 2494, 3033, 3505, 4083
AcuI	CTGAAG	5 cut(s)	1314, 1478, 2180, 2606, 3075
AcyI	GRCGYC	3 cut(s)	37, 59, 308
AdeI	CACNNNGTG	1 cut(s)	2264
AfeI	AGCGCT	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	3025
AflIII	ACRYGT	2 cut(s)	2024, 3199
AgeI	ACCGGT	1 cut(s)	135
AjiI	CACGTC	2 cut(s)	471, 2027
AjnI	CCWGG	4 cut(s)	341, 1765, 1976, 2467
AloI	GAACNNNNNNTCC	2 cut(s)	3907, 3939
Alw21I	GWGCWC	4 cut(s)	97, 1525, 1657, 2014
Alw26I	GTCTC	4 cut(s)	1961, 2552, 3771, 3884
AlwI	GGATC	6 cut(s)	926, 939, 1374, 1778, 2680, 2712
Ama87I	CYCGRG	2 cut(s)	830, 3128
Aor51HI	AGCGCT	1 cut(s)	76
ApoI	RAATTY	5 cut(s)	2425, 2494, 3033, 3505, 4083
AsiGI	ACCGGT	1 cut(s)	135
Asp700I	GAANNNNTTC	3 cut(s)	3072, 3529, 4125
Asp718I	GGTACC	2 cut(s)	258, 3446
AspA2I	CCTAGG	1 cut(s)	253
AspLEI	GCGC	7 cut(s)	39, 77, 87, 213, 562, 3214, 3726
AsuC2I	CCSGG	4 cut(s)	67, 985, 1478, 3316
AsuHPI	GGTGA	7 cut(s)	512, 892, 1284, 2756, 3136, 3761, 3911
AvaI	CYCGRG	2 cut(s)	830, 3128
AvaII	GGWCC	6 cut(s)	69, 288, 1115, 1686, 2288, 4132
AvrII	CCTAGG	1 cut(s)	253
BaeGI	GKGCMC	5 cut(s)	598, 831, 1130, 2086, 3296
BalI	TGGCCA	1 cut(s)	4079
BamHI	GGATCC	1 cut(s)	931
BanI	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3446
BanII	GRGCYC	2 cut(s)	97, 1657
BbsI	GAAGAC	2 cut(s)	138, 848
Bbv12I	GWGCWC	4 cut(s)	97, 1525, 1657, 2014
BbvCI	CCTCAGC	1 cut(s)	858
BccI	CCATC	9 cut(s)	145, 491, 951, 1061, 3176, 3356, 3363, 3644, 4033
BceAI	ACGGC	5 cut(s)	96, 265, 286, 343, 2881
BcgI	CGANNNNNNTGC	2 cut(s)	1955, 1989
BciT130I	CCWGG	4 cut(s)	343, 1767, 1978, 2469
BciVI	GTATCC	3 cut(s)	2158, 4009, 4146
BcnI	CCSGG	4 cut(s)	67, 985, 1478, 3316
BcoDI	GTCTC	4 cut(s)	1961, 2552, 3771, 3884
BfaI	CTAG	8 cut(s)	254, 1529, 1917, 2457, 3333, 3606, 3702, 4053
BfmI	CTRYAG	2 cut(s)	1437, 3826
BfoI	RGCGCY	4 cut(s)	40, 78, 88, 214
BfrI	CTTAAG	1 cut(s)	3025
BfuAI	ACCTGC	1 cut(s)	1444
BfuI	GTATCC	3 cut(s)	2158, 4009, 4146
BglI	GCCNNNNNGGC	1 cut(s)	3679
BglII	AGATCT	2 cut(s)	1498, 4165
BlnI	CCTAGG	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	2698
Bme1390I	CCNGG	8 cut(s)	67, 343, 985, 1478, 1767, 1978, 2469, 3316
Bme18I	GGWCC	6 cut(s)	69, 288, 1115, 1686, 2288, 4132
BmeT110I	CYCGRG	2 cut(s)	830, 3128
BmgBI	CACGTC	2 cut(s)	471, 2027
BmrFI	CCNGG	8 cut(s)	67, 343, 985, 1478, 1767, 1978, 2469, 3316
BmrI	ACTGGG	1 cut(s)	3020
BmuI	ACTGGG	1 cut(s)	3020
BpiI	GAAGAC	2 cut(s)	138, 848
BpmI	CTGGAG	3 cut(s)	101, 1776, 3010
Bpu10I	CCTNAGC	3 cut(s)	858, 1656, 1722
BpuEI	CTTGAG	5 cut(s)	1267, 1688, 2534, 2617, 2876
BpuMI	CCSGG	4 cut(s)	67, 985, 1478, 3316
BsaBI	GATNNNNATC	2 cut(s)	930, 1053
BsaHI	GRCGYC	3 cut(s)	37, 59, 308
BsaI	GGTCTC	1 cut(s)	2552
BsaWI	WCCGGW	3 cut(s)	135, 1222, 1887
BsaXI	ACNNNNNCTCC	2 cut(s)	3249, 3279
Bse118I	RCCGGY	4 cut(s)	135, 601, 626, 4060
Bse1I	ACTGG	7 cut(s)	290, 979, 997, 2658, 2993, 3015, 3247
Bse3DI	GCAATG	4 cut(s)	1012, 1782, 3648, 3949
Bse8I	GATNNNNATC	2 cut(s)	930, 1053
BseBI	CCWGG	4 cut(s)	343, 1767, 1978, 2469
BseJI	GATNNNNATC	2 cut(s)	930, 1053
BseMI	GCAATG	4 cut(s)	1012, 1782, 3648, 3949
BseMII	CTCAG	8 cut(s)	738, 837, 849, 1670, 1886, 1926, 2472, 3897
BseNI	ACTGG	7 cut(s)	290, 979, 997, 2658, 2993, 3015, 3247
BseRI	GAGGAG	7 cut(s)	63, 233, 361, 604, 622, 848, 2524
BseSI	GKGCMC	5 cut(s)	598, 831, 1130, 2086, 3296
BseX3I	CGGCCG	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	1876
BsgI	GTGCAG	3 cut(s)	884, 1203, 3736
Bsh1236I	CGCG	6 cut(s)	197, 216, 264, 297, 394, 968
Bsh1285I	CGRYCG	3 cut(s)	24, 112, 177
BshNI	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3446
BshTI	ACCGGT	1 cut(s)	135
BsiEI	CGRYCG	3 cut(s)	24, 112, 177
BsiHKAI	GWGCWC	4 cut(s)	97, 1525, 1657, 2014
BsiHKCI	CYCGRG	2 cut(s)	830, 3128
BslFI	GGGAC	5 cut(s)	242, 2004, 3251, 3382, 4145
BsmAI	GTCTC	4 cut(s)	1961, 2552, 3771, 3884
BsmFI	GGGAC	5 cut(s)	242, 2004, 3251, 3382, 4145
BsmI	GAATGC	3 cut(s)	913, 2542, 2886
Bso31I	GGTCTC	1 cut(s)	2552
BsoBI	CYCGRG	2 cut(s)	830, 3128
Bsp1286I	GDGCHC	9 cut(s)	97, 598, 831, 1130, 1525, 1657, 2014, 2086, 3296
Bsp1407I	TGTACA	2 cut(s)	2871, 3981
BspCNI	CTCAG	8 cut(s)	739, 838, 850, 1669, 1885, 1927, 2473, 3898
BspFNI	CGCG	6 cut(s)	197, 216, 264, 297, 394, 968
BspMAI	CTGCAG	1 cut(s)	1441
BspMI	ACCTGC	1 cut(s)	1444
BspPI	GGATC	6 cut(s)	926, 939, 1374, 1778, 2680, 2712
BspQI	GCTCTTC	2 cut(s)	1530, 2019
BspT107I	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3446
BspTI	CTTAAG	1 cut(s)	3025
BspTNI	GGTCTC	1 cut(s)	2552
BsrDI	GCAATG	4 cut(s)	1012, 1782, 3648, 3949
BsrFI	RCCGGY	4 cut(s)	135, 601, 626, 4060
BsrGI	TGTACA	2 cut(s)	2871, 3981
BsrI	ACTGG	7 cut(s)	290, 979, 997, 2658, 2993, 3015, 3247
BssAI	RCCGGY	4 cut(s)	135, 601, 626, 4060
BssNI	GRCGYC	3 cut(s)	37, 59, 308
BssT1I	CCWWGG	2 cut(s)	253, 2071
Bst2UI	CCWGG	4 cut(s)	343, 1767, 1978, 2469
Bst6I	CTCTTC	6 cut(s)	273, 885, 1098, 1530, 2019, 3558
BstACI	GRCGYC	3 cut(s)	37, 59, 308
BstAFI	CTTAAG	1 cut(s)	3025
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstAUI	TGTACA	2 cut(s)	2871, 3981
BstC8I	GCNNGC	7 cut(s)	299, 603, 867, 1728, 2112, 2580, 3801
BstDSI	CCRYGG	2 cut(s)	295, 392
BstFNI	CGCG	6 cut(s)	197, 216, 264, 297, 394, 968
BstH2I	RGCGCY	4 cut(s)	40, 78, 88, 214
BstHHI	GCGC	7 cut(s)	39, 77, 87, 213, 562, 3214, 3726
BstMAI	GTCTC	4 cut(s)	1961, 2552, 3771, 3884
BstMCI	CGRYCG	3 cut(s)	24, 112, 177
BstNI	CCWGG	4 cut(s)	343, 1767, 1978, 2469
BstNSI	RCATGY	6 cut(s)	1090, 1201, 1684, 2114, 3203, 3603
BstSCI	CCNGG	8 cut(s)	65, 341, 983, 1476, 1765, 1976, 2467, 3314
BstSFI	CTRYAG	2 cut(s)	1437, 3826
BstSLI	GKGCMC	5 cut(s)	598, 831, 1130, 2086, 3296
BstUI	CGCG	6 cut(s)	197, 216, 264, 297, 394, 968
BstV2I	GAAGAC	2 cut(s)	138, 848
BstX2I	RGATCY	6 cut(s)	931, 1366, 1498, 2685, 2704, 4165
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	6 cut(s)	931, 1366, 1498, 2685, 2704, 4165
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	3 cut(s)	2158, 4009, 4146
BtgI	CCRYGG	2 cut(s)	295, 392
BtgZI	GCGATG	3 cut(s)	187, 449, 983
BtrI	CACGTC	2 cut(s)	471, 2027
BtsI	GCAGTG	2 cut(s)	1073, 1549
BtsIMutI	CAGTG	4 cut(s)	1073, 1128, 1549, 2651
BveI	ACCTGC	1 cut(s)	1444
Cac8I	GCNNGC	7 cut(s)	299, 603, 867, 1728, 2112, 2580, 3801
CfoI	GCGC	7 cut(s)	39, 77, 87, 213, 562, 3214, 3726
Cfr10I	RCCGGY	4 cut(s)	135, 601, 626, 4060
Cfr42I	CCGCGG	2 cut(s)	298, 395
CseI	GACGC	2 cut(s)	48, 203
CspAI	ACCGGT	1 cut(s)	135
DinI	GGCGCC	1 cut(s)	38
DraIII	CACNNNGTG	1 cut(s)	2264
EaeI	YGGCCR	2 cut(s)	109, 4077
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	6 cut(s)	273, 885, 1098, 1530, 2019, 3558
EarI	CTCTTC	6 cut(s)	273, 885, 1098, 1530, 2019, 3558
EciI	GGCGGA	2 cut(s)	20, 884
Ecl136II	GAGCTC	2 cut(s)	95, 1655
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	253, 2071
Eco24I	GRGCYC	2 cut(s)	97, 1657
Eco31I	GGTCTC	1 cut(s)	2552
Eco32I	GATATC	1 cut(s)	3572
Eco47I	GGWCC	6 cut(s)	69, 288, 1115, 1686, 2288, 4132
Eco47III	AGCGCT	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	95, 1655
Eco57I	CTGAAG	5 cut(s)	1314, 1478, 2180, 2606, 3075
Eco88I	CYCGRG	2 cut(s)	830, 3128
EcoICRI	GAGCTC	2 cut(s)	95, 1655
EcoO109I	RGGNCCY	2 cut(s)	2288, 2965
EcoRI	GAATTC	1 cut(s)	3505
EcoRII	CCWGG	4 cut(s)	341, 1765, 1976, 2467
EcoRV	GATATC	1 cut(s)	3572
EcoT14I	CCWWGG	2 cut(s)	253, 2071
EcoT22I	ATGCAT	1 cut(s)	2542
EcoT38I	GRGCYC	2 cut(s)	97, 1657
EgeI	GGCGCC	1 cut(s)	38
EheI	GGCGCC	1 cut(s)	38
ErhI	CCWWGG	2 cut(s)	253, 2071
FaqI	GGGAC	5 cut(s)	242, 2004, 3251, 3382, 4145
FauI	CCCGC	2 cut(s)	290, 299
FblI	GTMKAC	1 cut(s)	177
FriOI	GRGCYC	2 cut(s)	97, 1657
FspBI	CTAG	8 cut(s)	254, 1529, 1917, 2457, 3333, 3606, 3702, 4053
GlaI	GCGC	7 cut(s)	38, 76, 86, 212, 561, 3213, 3725
GsaI	CCCAGC	1 cut(s)	1880
GsuI	CTGGAG	3 cut(s)	101, 1776, 3010
HaeII	RGCGCY	4 cut(s)	40, 78, 88, 214
HgaI	GACGC	2 cut(s)	48, 203
HhaI	GCGC	7 cut(s)	39, 77, 87, 213, 562, 3214, 3726
Hin1I	GRCGYC	3 cut(s)	37, 59, 308
Hin6I	GCGC	7 cut(s)	37, 75, 85, 211, 560, 3212, 3724
HinP1I	GCGC	7 cut(s)	37, 75, 85, 211, 560, 3212, 3724
HincII	GTYRAC	3 cut(s)	178, 2830, 3556
HindII	GTYRAC	3 cut(s)	178, 2830, 3556
HindIII	AAGCTT	2 cut(s)	1259, 1724
HpaI	GTTAAC	1 cut(s)	2830
HphI	GGTGA	7 cut(s)	512, 892, 1284, 2756, 3136, 3761, 3911
Hpy166II	GTNNAC	6 cut(s)	178, 468, 2830, 2996, 3556, 3966
Hpy8I	GTNNAC	6 cut(s)	178, 468, 2830, 2996, 3556, 3966
HpyCH4IV	ACGT	6 cut(s)	308, 470, 2026, 2980, 3328, 3821
HpySE526I	ACGT	6 cut(s)	308, 470, 2026, 2980, 3328, 3821
Hsp92I	GRCGYC	3 cut(s)	37, 59, 308
HspAI	GCGC	7 cut(s)	37, 75, 85, 211, 560, 3212, 3724
KasI	GGCGCC	1 cut(s)	36
KpnI	GGTACC	2 cut(s)	262, 3450
KroI	GCCGGC	1 cut(s)	601
KroNI	GCCGGC	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	2830
KspI	CCGCGG	2 cut(s)	298, 395
LguI	GCTCTTC	2 cut(s)	1530, 2019
LmnI	GCTCC	8 cut(s)	42, 50, 82, 388, 871, 1757, 2317, 2920
MaeI	CTAG	8 cut(s)	254, 1529, 1917, 2457, 3333, 3606, 3702, 4053
MaeII	ACGT	6 cut(s)	308, 470, 2026, 2980, 3328, 3821
MfeI	CAATTG	1 cut(s)	2802
MflI	RGATCY	6 cut(s)	931, 1366, 1498, 2685, 2704, 4165
MhlI	GDGCHC	9 cut(s)	97, 598, 831, 1130, 1525, 1657, 2014, 2086, 3296
MlsI	TGGCCA	1 cut(s)	4079
MluNI	TGGCCA	1 cut(s)	4079
Mly113I	GGCGCC	1 cut(s)	37
MlyI	GAGTC	7 cut(s)	1019, 1274, 1864, 1986, 2747, 3479, 3593
MmeI	TCCRAC	8 cut(s)	294, 329, 744, 1344, 1569, 1588, 2205, 3235
Mox20I	TGGCCA	1 cut(s)	4079
Mph1103I	ATGCAT	1 cut(s)	2542
MroNI	GCCGGC	1 cut(s)	601
MroXI	GAANNNNTTC	3 cut(s)	3072, 3529, 4125
MscI	TGGCCA	1 cut(s)	4079
MslI	CAYNNNNRTG	5 cut(s)	1542, 1813, 2007, 3342, 3839
Msp20I	TGGCCA	1 cut(s)	4079
MspA1I	CMGCKG	6 cut(s)	297, 394, 1002, 1876, 2032, 4159
MspCI	CTTAAG	1 cut(s)	3025
MspR9I	CCNGG	8 cut(s)	67, 343, 985, 1478, 1767, 1978, 2469, 3316
MunI	CAATTG	1 cut(s)	2802
Mva1269I	GAATGC	3 cut(s)	913, 2542, 2886
MvaI	CCWGG	4 cut(s)	343, 1767, 1978, 2469
MvnI	CGCG	6 cut(s)	197, 216, 264, 297, 394, 968
NaeI	GCCGGC	1 cut(s)	603
NarI	GGCGCC	1 cut(s)	37
NciI	CCSGG	4 cut(s)	67, 985, 1478, 3316
NgoMIV	GCCGGC	1 cut(s)	601
NmeAIII	GCCGAG	4 cut(s)	71, 79, 577, 1300
NmuCI	GTSAC	7 cut(s)	25, 500, 1022, 1071, 1823, 2984, 4096
NsiI	ATGCAT	1 cut(s)	2542
NspI	RCATGY	6 cut(s)	1090, 1201, 1684, 2114, 3203, 3603
PaeI	GCATGC	1 cut(s)	2114
PaeR7I	CTCGAG	1 cut(s)	3128
PciI	ACATGT	1 cut(s)	3199
PciSI	GCTCTTC	2 cut(s)	1530, 2019
PcsI	WCGNNNNNNNCGW	4 cut(s)	183, 243, 467, 2952
PctI	GAATGC	3 cut(s)	913, 2542, 2886
PdiI	GCCGGC	1 cut(s)	603
PdmI	GAANNNNTTC	3 cut(s)	3072, 3529, 4125
PflFI	GACNNNGTC	2 cut(s)	173, 310
PflMI	CCANNNNNTGG	2 cut(s)	3463, 4012
PfoI	TCCNGGA	1 cut(s)	1476
PinAI	ACCGGT	1 cut(s)	135
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	7 cut(s)	1019, 1274, 1864, 1986, 2747, 3479, 3592
PluTI	GGCGCC	1 cut(s)	40
PpsI	GAGTC	7 cut(s)	1019, 1274, 1864, 1986, 2747, 3479, 3592
PpuMI	RGGWCCY	1 cut(s)	2288
PscI	ACATGT	1 cut(s)	3199
PsiI	TTATAA	1 cut(s)	2666
Psp124BI	GAGCTC	2 cut(s)	97, 1657
Psp5II	RGGWCCY	1 cut(s)	2288
Psp6I	CCWGG	4 cut(s)	341, 1765, 1976, 2467
PspFI	CCCAGC	1 cut(s)	1876
PspGI	CCWGG	4 cut(s)	341, 1765, 1976, 2467
PspPPI	RGGWCCY	1 cut(s)	2288
PstI	CTGCAG	1 cut(s)	1441
PsuI	RGATCY	6 cut(s)	931, 1366, 1498, 2685, 2704, 4165
PsyI	GACNNNGTC	2 cut(s)	173, 310
PvuI	CGATCG	1 cut(s)	24
PvuII	CAGCTG	3 cut(s)	1876, 2032, 4159
RseI	CAYNNNNRTG	5 cut(s)	1542, 1813, 2007, 3342, 3839
SacI	GAGCTC	2 cut(s)	97, 1657
SacII	CCGCGG	2 cut(s)	298, 395
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	2 cut(s)	1530, 2019
SbfI	CCTGCAGG	1 cut(s)	1441
ScaI	AGTACT	1 cut(s)	2698
SchI	GAGTC	7 cut(s)	1019, 1274, 1864, 1986, 2747, 3479, 3593
ScrFI	CCNGG	8 cut(s)	67, 343, 985, 1478, 1767, 1978, 2469, 3316
SdaI	CCTGCAGG	1 cut(s)	1441
SduI	GDGCHC	9 cut(s)	97, 598, 831, 1130, 1525, 1657, 2014, 2086, 3296
SfcI	CTRYAG	2 cut(s)	1437, 3826
SfoI	GGCGCC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	3128
Sfr303I	CCGCGG	2 cut(s)	298, 395
SgrBI	CCGCGG	2 cut(s)	298, 395
SinI	GGWCC	6 cut(s)	69, 288, 1115, 1686, 2288, 4132
SlaI	CTCGAG	1 cut(s)	3128
SmiMI	CAYNNNNRTG	5 cut(s)	1542, 1813, 2007, 3342, 3839
SmlI	CTYRAG	7 cut(s)	1282, 1703, 2549, 2632, 2891, 3025, 3128
SmoI	CTYRAG	7 cut(s)	1282, 1703, 2549, 2632, 2891, 3025, 3128
SphI	GCATGC	1 cut(s)	2114
Sse8387I	CCTGCAGG	1 cut(s)	1441
SspDI	GGCGCC	1 cut(s)	36
SspMI	CTAG	8 cut(s)	254, 1529, 1917, 2457, 3333, 3606, 3702, 4053
SstI	GAGCTC	2 cut(s)	97, 1657
StyD4I	CCNGG	8 cut(s)	65, 341, 983, 1476, 1765, 1976, 2467, 3314
StyI	CCWWGG	2 cut(s)	253, 2071
TaiI	ACGT	6 cut(s)	311, 473, 2029, 2983, 3331, 3824
TaqI	TCGA	6 cut(s)	177, 237, 461, 2955, 3129, 3503
TatI	WGTACW	5 cut(s)	1453, 2696, 2871, 3963, 3981
TscAI	CASTG	4 cut(s)	1080, 1135, 1549, 2658
TseFI	GTSAC	7 cut(s)	25, 500, 1022, 1071, 1823, 2984, 4096
Tsp45I	GTSAC	7 cut(s)	25, 500, 1022, 1071, 1823, 2984, 4096
TspGWI	ACGGA	4 cut(s)	601, 2197, 2765, 3983
TspRI	CASTG	4 cut(s)	1080, 1135, 1549, 2658
Tth111I	GACNNNGTC	2 cut(s)	173, 310
Van91I	CCANNNNNTGG	2 cut(s)	3463, 4012
Vha464I	CTTAAG	1 cut(s)	3025
VpaK11BI	GGWCC	6 cut(s)	69, 288, 1115, 1686, 2288, 4132
XapI	RAATTY	5 cut(s)	2425, 2494, 3033, 3505, 4083
XceI	RCATGY	6 cut(s)	1090, 1201, 1684, 2114, 3203, 3603
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1680, 4099
XhoI	CTCGAG	1 cut(s)	3128
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	3 cut(s)	3072, 3529, 4125
XspI	CTAG	8 cut(s)	254, 1529, 1917, 2457, 3333, 3606, 3702, 4053
ZraI	GACGTC	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	2698
Zsp2I	ATGCAT	1 cut(s)	2542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.