DNA polymerase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 409, 504 |
| AccB1I | GGYRCC | 1 cut(s) | 358 |
| AccII | CGCG | 1 cut(s) | 20 |
| AccIII | TCCGGA | 1 cut(s) | 441 |
| AciI | CCGC | 3 cut(s) | 18, 54, 290 |
| AclWI | GGATC | 1 cut(s) | 339 |
| AcuI | CTGAAG | 2 cut(s) | 279, 443 |
| AfaI | GTAC | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 176 |
| AflIII | ACRYGT | 1 cut(s) | 511 |
| AgsI | TTSAA | 1 cut(s) | 230 |
| AluBI | AGCT | 3 cut(s) | 226, 280, 347 |
| AluI | AGCT | 3 cut(s) | 226, 280, 347 |
| AlwI | GGATC | 1 cut(s) | 339 |
| Aor13HI | TCCGGA | 1 cut(s) | 441 |
| AoxI | GGCC | 3 cut(s) | 15, 33, 468 |
| ApeKI | GCWGC | 2 cut(s) | 51, 280 |
| AspS9I | GGNCC | 3 cut(s) | 33, 167, 468 |
| AsuC2I | CCSGG | 1 cut(s) | 37 |
| AsuHPI | GGTGA | 1 cut(s) | 249 |
| AvaII | GGWCC | 1 cut(s) | 167 |
| BaeGI | GKGCMC | 1 cut(s) | 182 |
| BanI | GGYRCC | 1 cut(s) | 358 |
| BbvI | GCAGC | 2 cut(s) | 63, 267 |
| BccI | CCATC | 2 cut(s) | 3, 113 |
| BcnI | CCSGG | 1 cut(s) | 37 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfuAI | ACCTGC | 2 cut(s) | 409, 504 |
| BisI | GCNGC | 5 cut(s) | 18, 52, 55, 281, 291 |
| BlsI | GCNGC | 5 cut(s) | 19, 53, 56, 282, 292 |
| Bme1390I | CCNGG | 1 cut(s) | 37 |
| Bme18I | GGWCC | 1 cut(s) | 167 |
| BmgT120I | GGNCC | 3 cut(s) | 33, 167, 468 |
| BmiI | GGNNCC | 2 cut(s) | 34, 360 |
| BmrFI | CCNGG | 1 cut(s) | 37 |
| BmrI | ACTGGG | 1 cut(s) | 475 |
| BmsI | GCATC | 3 cut(s) | 136, 226, 277 |
| BmuI | ACTGGG | 1 cut(s) | 475 |
| BpuEI | CTTGAG | 2 cut(s) | 232, 404 |
| BpuMI | CCSGG | 1 cut(s) | 37 |
| BsaBI | GATNNNNATC | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 1 cut(s) | 240 |
| BsaWI | WCCGGW | 1 cut(s) | 441 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 176 |
| Bse118I | RCCGGY | 1 cut(s) | 540 |
| Bse1I | ACTGG | 3 cut(s) | 31, 49, 470 |
| Bse3DI | GCAATG | 1 cut(s) | 64 |
| Bse8I | GATNNNNATC | 1 cut(s) | 105 |
| BseAI | TCCGGA | 1 cut(s) | 441 |
| BseDI | CCNNGG | 1 cut(s) | 240 |
| BseGI | GGATG | 2 cut(s) | 14, 241 |
| BseJI | GATNNNNATC | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BseMI | GCAATG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseNI | ACTGG | 3 cut(s) | 31, 49, 470 |
| BseSI | GKGCMC | 1 cut(s) | 182 |
| BseXI | GCAGC | 2 cut(s) | 63, 267 |
| Bsh1236I | CGCG | 1 cut(s) | 20 |
| BshFI | GGCC | 3 cut(s) | 17, 35, 470 |
| BshNI | GGYRCC | 1 cut(s) | 358 |
| BsiSI | CCGG | 3 cut(s) | 36, 442, 541 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BsnI | GGCC | 3 cut(s) | 17, 35, 470 |
| Bsp1286I | GDGCHC | 1 cut(s) | 182 |
| Bsp13I | TCCGGA | 1 cut(s) | 441 |
| Bsp143I | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| BspACI | CCGC | 3 cut(s) | 18, 54, 290 |
| BspANI | GGCC | 3 cut(s) | 17, 35, 470 |
| BspCNI | CTCAG | 1 cut(s) | 466 |
| BspEI | TCCGGA | 1 cut(s) | 441 |
| BspFNI | CGCG | 1 cut(s) | 20 |
| BspLI | GGNNCC | 2 cut(s) | 34, 360 |
| BspMAI | CTGCAG | 1 cut(s) | 406 |
| BspMI | ACCTGC | 2 cut(s) | 409, 504 |
| BspPI | GGATC | 1 cut(s) | 339 |
| BspT107I | GGYRCC | 1 cut(s) | 358 |
| BsrDI | GCAATG | 1 cut(s) | 64 |
| BsrFI | RCCGGY | 1 cut(s) | 540 |
| BsrI | ACTGG | 3 cut(s) | 31, 49, 470 |
| BssAI | RCCGGY | 1 cut(s) | 540 |
| BssECI | CCNNGG | 1 cut(s) | 240 |
| BssMI | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| Bst4CI | ACNGT | 1 cut(s) | 184 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 473 |
| BstDEI | CTNAG | 1 cut(s) | 474 |
| BstF5I | GGATG | 2 cut(s) | 14, 241 |
| BstFNI | CGCG | 1 cut(s) | 20 |
| BstKTI | GATC | 7 cut(s) | 109, 334, 392, 429, 452, 492, 537 |
| BstMBI | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| BstNSI | RCATGY | 2 cut(s) | 142, 515 |
| BstSCI | CCNGG | 1 cut(s) | 35 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstSLI | GKGCMC | 1 cut(s) | 182 |
| BstUI | CGCG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 2 cut(s) | 63, 267 |
| BstX2I | RGATCY | 1 cut(s) | 331 |
| BstYI | RGATCY | 1 cut(s) | 331 |
| BsuRI | GGCC | 3 cut(s) | 17, 35, 470 |
| BtgZI | GCGATG | 1 cut(s) | 35 |
| BtsCI | GGATG | 2 cut(s) | 14, 241 |
| BtsI | GCAGTG | 1 cut(s) | 125 |
| BtsIMutI | CAGTG | 3 cut(s) | 125, 180, 471 |
| BveI | ACCTGC | 2 cut(s) | 409, 504 |
| Cfr10I | RCCGGY | 1 cut(s) | 540 |
| Cfr13I | GGNCC | 3 cut(s) | 33, 167, 468 |
| Csp6I | GTAC | 1 cut(s) | 419 |
| CviAII | CATG | 4 cut(s) | 139, 284, 512, 557 |
| CviJI | RGCY | 9 cut(s) | 17, 35, 40, 226, 280, 293, 347, 470, 544 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 35, 40, 226, 280, 293, 347, 470, 544 |
| CviQI | GTAC | 1 cut(s) | 419 |
| DdeI | CTNAG | 1 cut(s) | 474 |
| DpnI | GATC | 7 cut(s) | 108, 333, 391, 428, 451, 491, 536 |
| DpnII | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 473 |
| EarI | CTCTTC | 2 cut(s) | 150, 473 |
| Eco47I | GGWCC | 1 cut(s) | 167 |
| Eco57I | CTGAAG | 2 cut(s) | 279, 443 |
| FaeI | CATG | 4 cut(s) | 142, 287, 515, 560 |
| FatI | CATG | 4 cut(s) | 138, 283, 511, 556 |
| Fnu4HI | GCNGC | 5 cut(s) | 18, 52, 55, 281, 291 |
| FokI | GGATG | 2 cut(s) | 21, 248 |
| Fsp4HI | GCNGC | 5 cut(s) | 18, 52, 55, 281, 291 |
| GluI | GCNGC | 5 cut(s) | 18, 52, 55, 281, 291 |
| HaeIII | GGCC | 3 cut(s) | 17, 35, 470 |
| HapII | CCGG | 3 cut(s) | 36, 442, 541 |
| Hin1II | CATG | 4 cut(s) | 142, 287, 515, 560 |
| HincII | GTYRAC | 1 cut(s) | 528 |
| HindII | GTYRAC | 1 cut(s) | 528 |
| HinfI | GANTC | 5 cut(s) | 77, 113, 245, 481, 560 |
| HpaI | GTTAAC | 1 cut(s) | 528 |
| HpaII | CCGG | 3 cut(s) | 36, 442, 541 |
| HphI | GGTGA | 1 cut(s) | 249 |
| Hpy166II | GTNNAC | 2 cut(s) | 528, 564 |
| Hpy188I | TCNGA | 5 cut(s) | 100, 118, 298, 394, 486 |
| Hpy188III | TCNNGA | 5 cut(s) | 110, 367, 383, 442, 519 |
| Hpy8I | GTNNAC | 2 cut(s) | 528, 564 |
| HpyAV | CCTTC | 3 cut(s) | 7, 83, 193 |
| HpyCH4III | ACNGT | 1 cut(s) | 184 |
| HpyCH4V | TGCA | 2 cut(s) | 283, 404 |
| HpyF3I | CTNAG | 1 cut(s) | 474 |
| Hsp92II | CATG | 4 cut(s) | 142, 287, 515, 560 |
| Kpn2I | TCCGGA | 1 cut(s) | 441 |
| KspAI | GTTAAC | 1 cut(s) | 528 |
| Kzo9I | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| Lsp1109I | GCAGC | 2 cut(s) | 63, 267 |
| LweI | GCATC | 3 cut(s) | 136, 226, 277 |
| MaeIII | GTNAC | 2 cut(s) | 74, 123 |
| MalI | GATC | 7 cut(s) | 108, 333, 391, 428, 451, 491, 536 |
| MboI | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| MboII | GAAGA | 4 cut(s) | 167, 436, 490, 499 |
| MflI | RGATCY | 1 cut(s) | 331 |
| MhlI | GDGCHC | 1 cut(s) | 182 |
| MluCI | AATT | 5 cut(s) | 81, 299, 311, 412, 430 |
| MlyI | GAGTC | 4 cut(s) | 71, 239, 490, 569 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| MnlI | CCTC | 3 cut(s) | 58, 235, 363 |
| MroI | TCCGGA | 1 cut(s) | 441 |
| MseI | TTAA | 3 cut(s) | 204, 302, 527 |
| MspA1I | CMGCKG | 1 cut(s) | 54 |
| MspI | CCGG | 3 cut(s) | 36, 442, 541 |
| MspR9I | CCNGG | 1 cut(s) | 37 |
| MvnI | CGCG | 1 cut(s) | 20 |
| NciI | CCSGG | 1 cut(s) | 37 |
| NdeII | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| NlaIII | CATG | 4 cut(s) | 142, 287, 515, 560 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 360 |
| NmeAIII | GCCGAG | 1 cut(s) | 265 |
| NmuCI | GTSAC | 2 cut(s) | 74, 123 |
| NspI | RCATGY | 2 cut(s) | 142, 515 |
| PciI | ACATGT | 1 cut(s) | 511 |
| PfeI | GAWTC | 1 cut(s) | 113 |
| PkrI | GCNGC | 5 cut(s) | 19, 53, 56, 282, 292 |
| PleI | GAGTC | 4 cut(s) | 71, 239, 489, 568 |
| PpsI | GAGTC | 4 cut(s) | 71, 239, 489, 568 |
| PscI | ACATGT | 1 cut(s) | 511 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 360 |
| PspPI | GGNCC | 3 cut(s) | 33, 167, 468 |
| PstI | CTGCAG | 1 cut(s) | 406 |
| PsuI | RGATCY | 1 cut(s) | 331 |
| RsaI | GTAC | 1 cut(s) | 420 |
| RsaNI | GTAC | 1 cut(s) | 419 |
| SaqAI | TTAA | 3 cut(s) | 204, 302, 527 |
| SatI | GCNGC | 5 cut(s) | 18, 52, 55, 281, 291 |
| Sau3AI | GATC | 7 cut(s) | 106, 331, 389, 426, 449, 489, 534 |
| Sau96I | GGNCC | 3 cut(s) | 33, 167, 468 |
| SbfI | CCTGCAGG | 1 cut(s) | 406 |
| SchI | GAGTC | 4 cut(s) | 71, 239, 490, 569 |
| ScrFI | CCNGG | 1 cut(s) | 37 |
| SdaI | CCTGCAGG | 1 cut(s) | 406 |
| SduI | GDGCHC | 1 cut(s) | 182 |
| SetI | ASST | 9 cut(s) | 69, 172, 204, 228, 282, 349, 364, 403, 498 |
| SfaNI | GCATC | 3 cut(s) | 136, 226, 277 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| SinI | GGWCC | 1 cut(s) | 167 |
| SmlI | CTYRAG | 2 cut(s) | 247, 383 |
| SmoI | CTYRAG | 2 cut(s) | 247, 383 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 406 |
| Sse9I | AATT | 5 cut(s) | 81, 299, 311, 412, 430 |
| SsiI | CCGC | 3 cut(s) | 18, 54, 290 |
| StyD4I | CCNGG | 1 cut(s) | 35 |
| TaaI | ACNGT | 1 cut(s) | 184 |
| TasI | AATT | 5 cut(s) | 81, 299, 311, 412, 430 |
| TatI | WGTACW | 1 cut(s) | 418 |
| TauI | GCSGC | 3 cut(s) | 20, 57, 293 |
| TfiI | GAWTC | 1 cut(s) | 113 |
| Tru1I | TTAA | 3 cut(s) | 204, 302, 527 |
| Tru9I | TTAA | 3 cut(s) | 204, 302, 527 |
| TscAI | CASTG | 3 cut(s) | 132, 187, 478 |
| TseFI | GTSAC | 2 cut(s) | 74, 123 |
| TseI | GCWGC | 2 cut(s) | 51, 280 |
| Tsp45I | GTSAC | 2 cut(s) | 74, 123 |
| TspDTI | ATGAA | 2 cut(s) | 207, 324 |
| TspRI | CASTG | 3 cut(s) | 132, 187, 478 |
| VpaK11BI | GGWCC | 1 cut(s) | 167 |
| XceI | RCATGY | 2 cut(s) | 142, 515 |