Rmu_sc0000697.1_g000011

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000697.1
Physical Location & Seq
Forward (+)
98249 .. 101547
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000697.1_g000011.1.cds

Sequence Viewer

Length: 825 bp
atggaagatgctgctttgggtcttgtggaaacttctgagttattgtggaagagggatttcgcggagcctggccatcgagtcttctggactcgagcatcttctcctttcaaccagtcagttgttgcaccttcatcccgtcatcttttcgtcgagtctcaattcccacgggtttggcccgtgttcacgccactcttaccttttgggagggagatgggtggcggtgtagtggtttgggggacccaaaccagatatgggatcccggccctattgtctggtggcagttggttgctgtgcgtcgagcacttggacgtaagagagttcgtcttggcttcaggcagtgtcgaggatgcagggtccccaggtcaaggtactacgtcgactgacgatggtgccaagtcctcccagagaagggtcttccgatctatggagcggcggaataggtcaaggagttcgtttgctaattttcgagtttttgacaccctcgattactttcggactcctgcgacgtactggcaacctgtaccgaccgaaaacgccaacgaccggttccagatcaagatggagaagccgatctacgacacggtcgacgaggacgagtacgacgcgatcatcgccaagcgccacgaggagttcggggacttcatcgaggacgacgacagcctagggtactgcgacgacggcgaggaagaggattggcttcctacgtcgtcggatgaatcagacggcgatatgaggcccaggaggaggaagaaggtggagaaggagccgcggcccaaaaagcccaattcttcgcttacagcggcggtggcgatgatggggaagtag

Protein Analysis

274

Amino Acids

31.06

Weight (kDa)

5.0

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 377, 585
AccII CGCG 3 cut(s) 62, 605, 769
AciI CCGC 8 cut(s) 62, 219, 430, 433, 767, 769, 800, 803
AclWI GGATC 2 cut(s) 250, 263
AcoI YGGCCR 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 5 cut(s) 370, 509, 522, 599, 668
AfiI CCNNNNNNNGG 7 cut(s) 252, 365, 408, 409, 424, 543, 744
AgeI ACCGGT 1 cut(s) 543
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 3 cut(s) 67, 358, 737
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 250, 263
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 5 cut(s) 70, 173, 261, 734, 770
ApeKI GCWGC 1 cut(s) 11
AsiGI ACCGGT 1 cut(s) 543
AspA2I CCTAGG 1 cut(s) 661
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 6 cut(s) 174, 237, 262, 354, 735, 771
AsuC2I CCSGG 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 2 cut(s) 237, 354
AvrII CCTAGG 1 cut(s) 661
BalI TGGCCA 1 cut(s) 72
BamHI GGATCC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BauI CACGAG 1 cut(s) 623
BbsI GAAGAC 2 cut(s) 73, 406
Bbv12I GWGCWC 1 cut(s) 303
BccI CCATC 5 cut(s) 81, 205, 380, 553, 808
BceAI ACGGC 2 cut(s) 694, 739
BciT130I CCWGG 3 cut(s) 69, 360, 739
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 662
BfoI RGCGCY 1 cut(s) 622
BisI GCNGC 5 cut(s) 12, 431, 767, 770, 801
BlnI CCTAGG 1 cut(s) 661
BlsI GCNGC 5 cut(s) 13, 432, 768, 771, 802
Bme1390I CCNGG 4 cut(s) 69, 260, 360, 739
Bme18I GGWCC 2 cut(s) 237, 354
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 6 cut(s) 174, 237, 262, 354, 735, 771
BmiI GGNNCC 9 cut(s) 66, 238, 239, 257, 355, 356, 391, 548, 765
BmrFI CCNGG 4 cut(s) 69, 260, 360, 739
BmsI GCATC 2 cut(s) 104, 337
BpiI GAAGAC 2 cut(s) 73, 406
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 5 cut(s) 164, 358, 661, 737, 767
BsaWI WCCGGW 1 cut(s) 543
Bsc4I CCNNNNNNNGG 7 cut(s) 252, 365, 408, 409, 424, 543, 744
Bse118I RCCGGY 1 cut(s) 543
Bse1I ACTGG 2 cut(s) 112, 515
BseBI CCWGG 3 cut(s) 69, 360, 739
BseDI CCNNGG 5 cut(s) 164, 358, 661, 737, 767
BseGI GGATG 3 cut(s) 131, 352, 718
BseLI CCNNNNNNNGG 7 cut(s) 252, 365, 408, 409, 424, 543, 744
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 112, 515
BseRI GAGGAG 2 cut(s) 641, 757
Bsh1236I CGCG 3 cut(s) 62, 605, 769
Bsh1285I CGRYCG 3 cut(s) 528, 544, 585
BshFI GGCC 5 cut(s) 72, 175, 263, 736, 772
BshNI GGYRCC 1 cut(s) 389
BshTI ACCGGT 1 cut(s) 543
BsiEI CGRYCG 3 cut(s) 528, 544, 585
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 260, 544
BslFI GGGAC 3 cut(s) 250, 340, 650
BslI CCNNNNNNNGG 7 cut(s) 252, 365, 408, 409, 424, 543, 744
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 3 cut(s) 250, 340, 650
BsnI GGCC 5 cut(s) 72, 175, 263, 736, 772
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 5 cut(s) 255, 419, 552, 570, 606
BspACI CCGC 8 cut(s) 62, 219, 430, 433, 767, 769, 800, 803
BspANI GGCC 5 cut(s) 72, 175, 263, 736, 772
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 3 cut(s) 62, 605, 769
BspLI GGNNCC 9 cut(s) 66, 238, 239, 257, 355, 356, 391, 548, 765
BspPI GGATC 2 cut(s) 250, 263
BspT107I GGYRCC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 543
BsrI ACTGG 2 cut(s) 112, 515
BssAI RCCGGY 1 cut(s) 543
BssECI CCNNGG 5 cut(s) 164, 358, 661, 737, 767
BssMI GATC 5 cut(s) 255, 419, 552, 570, 606
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 623
Bst2UI CCWGG 3 cut(s) 69, 360, 739
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 2 cut(s) 44, 681
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 2 cut(s) 164, 767
BstF5I GGATG 3 cut(s) 131, 352, 718
BstFNI CGCG 3 cut(s) 62, 605, 769
BstH2I RGCGCY 1 cut(s) 622
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 5 cut(s) 258, 422, 555, 573, 609
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 5 cut(s) 255, 419, 552, 570, 606
BstMCI CGRYCG 3 cut(s) 528, 544, 585
BstMWI GCNNNNNNNGC 4 cut(s) 611, 678, 778, 806
BstNI CCWGG 3 cut(s) 69, 360, 739
BstSCI CCNGG 4 cut(s) 67, 258, 358, 737
BstUI CGCG 3 cut(s) 62, 605, 769
BstV2I GAAGAC 2 cut(s) 73, 406
BstX2I RGATCY 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 5 cut(s) 72, 175, 263, 736, 772
BtgI CCRYGG 2 cut(s) 164, 767
BtgZI GCGATG 1 cut(s) 595
BtsCI GGATG 3 cut(s) 131, 352, 718
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
CfoI GCGC 1 cut(s) 621
Cfr10I RCCGGY 1 cut(s) 543
Cfr13I GGNCC 6 cut(s) 174, 237, 262, 354, 735, 771
Cfr42I CCGCGG 1 cut(s) 770
CseI GACGC 2 cut(s) 283, 611
Csp6I GTAC 5 cut(s) 369, 508, 521, 598, 667
CspAI ACCGGT 1 cut(s) 543
CviQI GTAC 5 cut(s) 369, 508, 521, 598, 667
DdeI CTNAG 1 cut(s) 36
DpnI GATC 5 cut(s) 257, 421, 554, 572, 608
DpnII GATC 5 cut(s) 255, 419, 552, 570, 606
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 44, 681
EarI CTCTTC 2 cut(s) 44, 681
EciI GGCGGA 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 661
Eco47I GGWCC 2 cut(s) 237, 354
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 2 cut(s) 237, 354
EcoRII CCWGG 3 cut(s) 67, 358, 737
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
FaiI YATR 3 cut(s) 252, 425, 731
FaqI GGGAC 3 cut(s) 250, 340, 650
FblI GTMKAC 2 cut(s) 377, 585
Fnu4HI GCNGC 5 cut(s) 12, 431, 767, 770, 801
FokI GGATG 3 cut(s) 118, 359, 725
Fsp4HI GCNGC 5 cut(s) 12, 431, 767, 770, 801
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 620
GluI GCNGC 5 cut(s) 12, 431, 767, 770, 801
HaeII RGCGCY 1 cut(s) 622
HaeIII GGCC 5 cut(s) 72, 175, 263, 736, 772
HapII CCGG 2 cut(s) 260, 544
HgaI GACGC 2 cut(s) 283, 611
HhaI GCGC 1 cut(s) 621
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HincII GTYRAC 2 cut(s) 378, 586
HindII GTYRAC 2 cut(s) 378, 586
HinfI GANTC 5 cut(s) 78, 88, 152, 496, 716
HpaII CCGG 2 cut(s) 260, 544
Hpy166II GTNNAC 3 cut(s) 183, 378, 586
Hpy188I TCNGA 5 cut(s) 37, 419, 495, 712, 721
Hpy188III TCNNGA 3 cut(s) 85, 550, 556
Hpy8I GTNNAC 3 cut(s) 183, 378, 586
HpyAV CCTTC 4 cut(s) 138, 402, 745, 754
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 4 cut(s) 309, 374, 506, 704
HpyCH4V TGCA 2 cut(s) 125, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 611, 678, 778, 806
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 4 cut(s) 309, 374, 506, 704
HspAI GCGC 1 cut(s) 619
KflI GGGWCCC 2 cut(s) 237, 354
KspI CCGCGG 1 cut(s) 770
Kzo9I GATC 5 cut(s) 255, 419, 552, 570, 606
LmnI GCTCC 3 cut(s) 64, 427, 763
LweI GCATC 2 cut(s) 104, 337
MaeI CTAG 1 cut(s) 662
MaeII ACGT 4 cut(s) 309, 374, 506, 704
MalI GATC 5 cut(s) 257, 421, 554, 572, 608
MbiI CCGCTC 1 cut(s) 430
MboI GATC 5 cut(s) 255, 419, 552, 570, 606
MboII GAAGA 8 cut(s) 17, 61, 73, 90, 406, 698, 760, 780
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 3 cut(s) 158, 460, 784
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 4 cut(s) 82, 87, 161, 490
MmeI TCCRAC 1 cut(s) 690
Mox20I TGGCCA 1 cut(s) 72
MscI TGGCCA 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 769, 800
MspI CCGG 2 cut(s) 260, 544
MspR9I CCNGG 4 cut(s) 69, 260, 360, 739
MvaI CCWGG 3 cut(s) 69, 360, 739
MvnI CGCG 3 cut(s) 62, 605, 769
MwoI GCNNNNNNNGC 4 cut(s) 611, 678, 778, 806
NciI CCSGG 1 cut(s) 260
NdeII GATC 5 cut(s) 255, 419, 552, 570, 606
NlaIV GGNNCC 9 cut(s) 66, 238, 239, 257, 355, 356, 391, 548, 765
PaeR7I CTCGAG 1 cut(s) 90
PcsI WCGNNNNNNNCGW 3 cut(s) 582, 591, 651
PfeI GAWTC 1 cut(s) 716
PflFI GACNNNGTC 1 cut(s) 581
PinAI ACCGGT 1 cut(s) 543
PkrI GCNGC 5 cut(s) 13, 432, 768, 771, 802
PleI GAGTC 4 cut(s) 82, 86, 160, 490
PpsI GAGTC 4 cut(s) 82, 86, 160, 490
PpuMI RGGWCCY 2 cut(s) 237, 354
Psp5II RGGWCCY 2 cut(s) 237, 354
Psp6I CCWGG 3 cut(s) 67, 358, 737
PspGI CCWGG 3 cut(s) 67, 358, 737
PspN4I GGNNCC 9 cut(s) 66, 238, 239, 257, 355, 356, 391, 548, 765
PspPI GGNCC 6 cut(s) 174, 237, 262, 354, 735, 771
PspPPI RGGWCCY 2 cut(s) 237, 354
PspXI VCTCGAGB 1 cut(s) 90
PsuI RGATCY 1 cut(s) 255
PsyI GACNNNGTC 1 cut(s) 581
RsaI GTAC 5 cut(s) 370, 509, 522, 599, 668
RsaNI GTAC 5 cut(s) 369, 508, 521, 598, 667
SacII CCGCGG 1 cut(s) 770
SalI GTCGAC 2 cut(s) 376, 584
SatI GCNGC 5 cut(s) 12, 431, 767, 770, 801
Sau3AI GATC 5 cut(s) 255, 419, 552, 570, 606
Sau96I GGNCC 6 cut(s) 174, 237, 262, 354, 735, 771
SchI GAGTC 4 cut(s) 82, 87, 161, 490
ScrFI CCNGG 4 cut(s) 69, 260, 360, 739
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 2 cut(s) 104, 337
Sfr274I CTCGAG 1 cut(s) 90
Sfr303I CCGCGG 1 cut(s) 770
SgrBI CCGCGG 1 cut(s) 770
SinI GGWCC 2 cut(s) 237, 354
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 3 cut(s) 158, 460, 784
SsiI CCGC 8 cut(s) 62, 219, 430, 433, 767, 769, 800, 803
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 4 cut(s) 67, 258, 358, 737
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 4 cut(s) 312, 377, 509, 707
TaqII GACCGA 1 cut(s) 542
TasI AATT 3 cut(s) 158, 460, 784
TauI GCSGC 4 cut(s) 433, 769, 772, 803
TfiI GAWTC 1 cut(s) 716
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 3 cut(s) 120, 631, 729
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 237, 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 90
XmaJI CCTAGG 1 cut(s) 661
XmiI GTMKAC 2 cut(s) 377, 585
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.