Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Forward (+)

23336165 .. 23336875

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCTATGCGAGGTCATGCAGAAAGATATGGAGTGCCTTCTCCTCCAAAACGATTGATAGCAACTTGTAGTTCATCAGTGAATCGTGCCTTCCTGTACATTGCAGCGTGTGTATTTGGATGCAATAAGTTTGACGAAATTGTTAGTGCAATAATTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACGAAATTGTCTCTGCATCTGTTGTCTGCTGTAACAAGGCCAAGATTGACACTCCTGTGAAGGACTCAGAATGGAAGAGTCCTGGTATGCTGAGCCACTTTACTGTTGTCCGTAAGCTTGATGGTGGCATATTTCCTATGGGGTTTACTAAAGTGGCTGCAGATAAGAATTCTAAAGCCGGATCAAATGTCTTGAGCATTGAGGGCAGGTGGGCTTTACTCGCTTATCTTGTTCTCAATGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

145

Amino Acids

15.81

Weight (kDa)

9.18

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	358, 432
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	271
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	104, 347
ApoI	RAATTY	2 cut(s)	358, 432
BbvI	GCAGC	2 cut(s)	116, 334
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	205
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	387
BisI	GCNGC	2 cut(s)	105, 348
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	106, 349
Bme1390I	CCNGG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	110, 215
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	270, 272
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	116, 334
BshFI	GGCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	371
Bsp1720I	GCTNAGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	269, 273
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	96
BssMI	GATC	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	256, 281
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 410
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	116, 334
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	6 cut(s)	230, 285, 307, 347, 368, 404
CviKI_1	RGCY	6 cut(s)	230, 285, 307, 347, 368, 404
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	256, 281
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	20
FaiI	YATR	6 cut(s)	8, 18, 30, 278, 320, 329
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	105, 348
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	105, 348
GluI	GCNGC	2 cut(s)	105, 348
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	82, 254, 268
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	190, 336
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	2 cut(s)	190, 336
HpyAV	CCTTC	3 cut(s)	48, 100, 244
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	6 cut(s)	20, 104, 123, 149, 206, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 410
HpyF3I	CTNAG	2 cut(s)	256, 281
Hsp92II	CATG	1 cut(s)	20
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	371
LpnPI	CCDG	6 cut(s)	107, 258, 258, 285, 382, 382
Lsp1109I	GCAGC	2 cut(s)	116, 334
LweI	GCATC	2 cut(s)	110, 215
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	1 cut(s)	277
MluCI	AATT	5 cut(s)	138, 153, 195, 358, 432
MlyI	GAGTC	2 cut(s)	248, 277
MnlI	CCTC	3 cut(s)	5, 54, 385
MseI	TTAA	2 cut(s)	189, 436
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	393, 410
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	245
PaqCI	CACCTGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	106, 349
PleI	GAGTC	2 cut(s)	248, 276
PpsI	GAGTC	2 cut(s)	248, 276
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	189, 436
SatI	GCNGC	2 cut(s)	105, 348
Sau3AI	GATC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	248, 277
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	3 cut(s)	16, 309, 401
SfaNI	GCATC	2 cut(s)	110, 215
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	5 cut(s)	138, 153, 195, 358, 432
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	295
TasI	AATT	5 cut(s)	138, 153, 195, 358, 432
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	189, 436
Tru9I	TTAA	2 cut(s)	189, 436
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	2 cut(s)	104, 347
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	2 cut(s)	358, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.