Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Forward (+)

82591478 .. 82593154

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGTCTCCAGCTCGTGAAGGCTCGAGCAGTAGTAGAGGGCCAGATCATGTCTATGCGAGGTCATGCAGAAAGATATGGAGTGCCTTCTCCTCCAAAACGATTGATAGCAACTGGTAGTTCATCAGTGAATCGTGCCTTCCTGTACATTGCAGCGTGTGTATTTGGATGCAATAAGTTTGACGAAATTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACAAAATTGTCTCTGCATCTATTGTCTGCTGTAACAAGGCCAAGATTGACACTCCTGTGAAGGACTCAGAATGGAAGAGTCCTGGTATGCTGAGCCACTTTACTGTTGTCCGTAAGCTTGATGGTGGCATATTTCCTATGGGGTTTACTAAAGTGGCTGCAGATAAGAATTCTAAAGCCGGATCAAATGTCTTGAGCATTGAGGGCAGGCTTTTTCTTGATGCGTACTTCGGTACTTGCATGCTAAAGCTAGCATGCTTGACACTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

169

Amino Acids

18.32

Weight (kDa)

9.51

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	3 cut(s)	146, 464, 472
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	319
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	13, 355, 487
AluI	AGCT	3 cut(s)	13, 355, 487
Alw26I	GTCTC	2 cut(s)	11, 253
AlwI	GGATC	1 cut(s)	427
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	2 cut(s)	40, 276
ApeKI	GCWGC	2 cut(s)	152, 395
ApoI	RAATTY	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	40
AsuNHI	GCTAGC	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	24
BauI	CACGAG	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	164, 382
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	11, 253
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	2 cut(s)	153, 396
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	2 cut(s)	154, 397
Bme1390I	CCNGG	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	158, 263, 448
BmtI	GCTAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	318, 320
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	164, 382
BshFI	GGCC	2 cut(s)	42, 278
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	417
BsmAI	GTCTC	2 cut(s)	11, 253
BsnI	GGCC	2 cut(s)	42, 278
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	45, 419
Bsp1720I	GCTNAGC	1 cut(s)	329
BspANI	GGCC	2 cut(s)	42, 278
BspCNI	CTCAG	2 cut(s)	317, 321
BspMAI	CTGCAG	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	45, 419
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	4 cut(s)	446, 479, 489, 493
BstDEI	CTNAG	2 cut(s)	304, 329
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	2 cut(s)	48, 422
BstMAI	GTCTC	2 cut(s)	11, 253
BstMBI	GATC	2 cut(s)	45, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	2 cut(s)	481, 495
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	164, 382
BsuRI	GGCC	2 cut(s)	42, 278
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	4 cut(s)	446, 479, 489, 493
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	145, 463, 471
CviAII	CATG	4 cut(s)	49, 65, 478, 492
CviQI	GTAC	3 cut(s)	145, 463, 471
DdeI	CTNAG	2 cut(s)	304, 329
DpnI	GATC	2 cut(s)	47, 421
DpnII	GATC	2 cut(s)	45, 419
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	4 cut(s)	52, 68, 481, 495
FaiI	YATR	9 cut(s)	50, 56, 66, 78, 326, 368, 377, 479, 493
FatI	CATG	4 cut(s)	48, 64, 477, 491
Fnu4HI	GCNGC	2 cut(s)	153, 396
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	153, 396
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	2 cut(s)	153, 396
HaeIII	GGCC	2 cut(s)	42, 278
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	4 cut(s)	52, 68, 481, 495
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	130, 302, 316
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	238, 384
Hpy188I	TCNGA	2 cut(s)	307, 509
Hpy188III	TCNNGA	3 cut(s)	16, 430, 455
Hpy8I	GTNNAC	2 cut(s)	238, 384
HpyAV	CCTTC	4 cut(s)	13, 96, 148, 292
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	7 cut(s)	68, 152, 171, 197, 254, 398, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	2 cut(s)	304, 329
Hsp92II	CATG	4 cut(s)	52, 68, 481, 495
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	45, 419
LpnPI	CCDG	9 cut(s)	23, 56, 99, 155, 306, 306, 333, 430, 430
Lsp1109I	GCAGC	2 cut(s)	164, 382
LweI	GCATC	3 cut(s)	158, 263, 448
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	190, 269
MalI	GATC	2 cut(s)	47, 421
MboI	GATC	2 cut(s)	45, 419
MboII	GAAGA	2 cut(s)	325, 496
MluCI	AATT	3 cut(s)	186, 243, 406
MlyI	GAGTC	2 cut(s)	296, 325
MnlI	CCTC	4 cut(s)	31, 53, 102, 433
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	53, 293
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	441
NdeII	GATC	2 cut(s)	45, 419
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	52, 68, 481, 495
NspI	RCATGY	2 cut(s)	481, 495
OliI	CACNNNNGTG	1 cut(s)	293
PaeI	GCATGC	2 cut(s)	481, 495
PaeR7I	CTCGAG	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	154, 397
PleI	GAGTC	2 cut(s)	296, 324
PpsI	GAGTC	2 cut(s)	296, 324
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	146, 464, 472
RsaNI	GTAC	3 cut(s)	145, 463, 471
RseI	CAYNNNNRTG	2 cut(s)	53, 293
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	153, 396
Sau3AI	GATC	2 cut(s)	45, 419
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	296, 325
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	4 cut(s)	15, 64, 357, 489
SfaNI	GCATC	3 cut(s)	158, 263, 448
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	53, 293
SmlI	CTYRAG	2 cut(s)	24, 430
SmoI	CTYRAG	2 cut(s)	24, 430
SphI	GCATGC	2 cut(s)	481, 495
Sse9I	AATT	3 cut(s)	186, 243, 406
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	186, 243, 406
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	2 cut(s)	152, 395
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	2 cut(s)	481, 495
XhoI	CTCGAG	1 cut(s)	24
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.