DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_alpha_N | PF12254 | 2 - 46 | 4.6e-12 | DNA polymerase alpha subunit p180 N terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 108 |
| AccB1I | GGYRCC | 1 cut(s) | 108 |
| AccII | CGCG | 2 cut(s) | 114, 147 |
| AciI | CCGC | 6 cut(s) | 61, 112, 145, 147, 266, 269 |
| AfaI | GTAC | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 147, 198, 407 |
| AjiI | CACGTC | 1 cut(s) | 309 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| AoxI | GGCC | 4 cut(s) | 100, 188, 233, 345 |
| ApeKI | GCWGC | 1 cut(s) | 263 |
| Asp718I | GGTACC | 1 cut(s) | 108 |
| AspA2I | CCTAGG | 1 cut(s) | 103 |
| AspS9I | GGNCC | 3 cut(s) | 138, 189, 234 |
| AsuHPI | GGTGA | 2 cut(s) | 350, 424 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| AvrII | CCTAGG | 1 cut(s) | 103 |
| BaeGI | GKGCMC | 1 cut(s) | 81 |
| BanI | GGYRCC | 1 cut(s) | 108 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 209 |
| BbvI | GCAGC | 1 cut(s) | 275 |
| BccI | CCATC | 4 cut(s) | 56, 92, 271, 329 |
| BceAI | ACGGC | 3 cut(s) | 136, 193, 214 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BfaI | CTAG | 2 cut(s) | 104, 442 |
| BisI | GCNGC | 3 cut(s) | 264, 267, 270 |
| BlnI | CCTAGG | 1 cut(s) | 103 |
| BlsI | GCNGC | 3 cut(s) | 265, 268, 271 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmgBI | CACGTC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 189, 234 |
| BmiI | GGNNCC | 3 cut(s) | 110, 140, 228 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BpiI | GAAGAC | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 4 cut(s) | 103, 145, 191, 230 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 147, 198, 407 |
| Bse1I | ACTGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 4 cut(s) | 103, 145, 191, 230 |
| BseGI | GGATG | 3 cut(s) | 172, 340, 382 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 147, 198, 407 |
| BseNI | ACTGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 2 cut(s) | 83, 211 |
| BseSI | GKGCMC | 1 cut(s) | 81 |
| BseXI | GCAGC | 1 cut(s) | 275 |
| Bsh1236I | CGCG | 2 cut(s) | 114, 147 |
| BshFI | GGCC | 4 cut(s) | 102, 190, 235, 347 |
| BshNI | GGYRCC | 1 cut(s) | 108 |
| BsiSI | CCGG | 1 cut(s) | 401 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 147, 198, 407 |
| BsnI | GGCC | 4 cut(s) | 102, 190, 235, 347 |
| Bsp1286I | GDGCHC | 1 cut(s) | 81 |
| Bsp143I | GATC | 2 cut(s) | 12, 438 |
| BspACI | CCGC | 6 cut(s) | 61, 112, 145, 147, 266, 269 |
| BspANI | GGCC | 4 cut(s) | 102, 190, 235, 347 |
| BspFNI | CGCG | 2 cut(s) | 114, 147 |
| BspLI | GGNNCC | 3 cut(s) | 110, 140, 228 |
| BspT107I | GGYRCC | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 140 |
| BssECI | CCNNGG | 4 cut(s) | 103, 145, 191, 230 |
| BssMI | GATC | 2 cut(s) | 12, 438 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 208 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDSI | CCRYGG | 2 cut(s) | 145, 230 |
| BstF5I | GGATG | 3 cut(s) | 172, 340, 382 |
| BstFNI | CGCG | 2 cut(s) | 114, 147 |
| BstKTI | GATC | 2 cut(s) | 15, 441 |
| BstMBI | GATC | 2 cut(s) | 12, 438 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 120, 241, 269, 298 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstSLI | GKGCMC | 1 cut(s) | 81 |
| BstUI | CGCG | 2 cut(s) | 114, 147 |
| BstV1I | GCAGC | 1 cut(s) | 275 |
| BstV2I | GAAGAC | 1 cut(s) | 209 |
| BsuRI | GGCC | 4 cut(s) | 102, 190, 235, 347 |
| BtgI | CCRYGG | 2 cut(s) | 145, 230 |
| BtgZI | GCGATG | 2 cut(s) | 37, 287 |
| BtrI | CACGTC | 1 cut(s) | 309 |
| BtsCI | GGATG | 3 cut(s) | 172, 340, 382 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 189, 234 |
| Cfr42I | CCGCGG | 1 cut(s) | 148 |
| Csp6I | GTAC | 1 cut(s) | 109 |
| CviQI | GTAC | 1 cut(s) | 109 |
| DpnI | GATC | 2 cut(s) | 14, 440 |
| DpnII | GATC | 2 cut(s) | 12, 438 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaiI | YATR | 3 cut(s) | 42, 183, 185 |
| FauI | CCCGC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 3 cut(s) | 264, 267, 270 |
| FokI | GGATG | 3 cut(s) | 179, 347, 389 |
| Fsp4HI | GCNGC | 3 cut(s) | 264, 267, 270 |
| FspBI | CTAG | 2 cut(s) | 104, 442 |
| GluI | GCNGC | 3 cut(s) | 264, 267, 270 |
| HaeIII | GGCC | 4 cut(s) | 102, 190, 235, 347 |
| HapII | CCGG | 1 cut(s) | 401 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 1 cut(s) | 170 |
| HpaII | CCGG | 1 cut(s) | 401 |
| HphI | GGTGA | 2 cut(s) | 350, 424 |
| Hpy166II | GTNNAC | 2 cut(s) | 28, 306 |
| Hpy188I | TCNGA | 3 cut(s) | 156, 166, 175 |
| Hpy8I | GTNNAC | 2 cut(s) | 28, 306 |
| Hpy99I | CGWCG | 7 cut(s) | 98, 119, 122, 166, 301, 313, 316 |
| HpyAV | CCTTC | 2 cut(s) | 211, 217 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 208 |
| HpyCH4IV | ACGT | 1 cut(s) | 308 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 120, 241, 269, 298 |
| HpySE526I | ACGT | 1 cut(s) | 308 |
| KpnI | GGTACC | 1 cut(s) | 112 |
| KspI | CCGCGG | 1 cut(s) | 148 |
| Kzo9I | GATC | 2 cut(s) | 12, 438 |
| LmnI | GCTCC | 2 cut(s) | 63, 226 |
| LpnPI | CCDG | 4 cut(s) | 121, 178, 205, 414 |
| Lsp1109I | GCAGC | 1 cut(s) | 275 |
| MaeI | CTAG | 2 cut(s) | 104, 442 |
| MaeII | ACGT | 1 cut(s) | 308 |
| MaeIII | GTNAC | 2 cut(s) | 252, 338 |
| MalI | GATC | 2 cut(s) | 14, 440 |
| MboI | GATC | 2 cut(s) | 12, 438 |
| MboII | GAAGA | 4 cut(s) | 140, 214, 226, 436 |
| MhlI | GDGCHC | 1 cut(s) | 81 |
| MluCI | AATT | 2 cut(s) | 247, 434 |
| MmeI | TCCRAC | 2 cut(s) | 144, 179 |
| MseI | TTAA | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 2 cut(s) | 147, 266 |
| MspI | CCGG | 1 cut(s) | 401 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MvnI | CGCG | 2 cut(s) | 114, 147 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 120, 241, 269, 298 |
| NdeII | GATC | 2 cut(s) | 12, 438 |
| NlaIV | GGNNCC | 3 cut(s) | 110, 140, 228 |
| NmuCI | GTSAC | 2 cut(s) | 252, 338 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 305 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PflFI | GACNNNGTC | 1 cut(s) | 160 |
| PkrI | GCNGC | 3 cut(s) | 265, 268, 271 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 3 cut(s) | 110, 140, 228 |
| PspPI | GGNCC | 3 cut(s) | 138, 189, 234 |
| PsyI | GACNNNGTC | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 110 |
| RsaNI | GTAC | 1 cut(s) | 109 |
| SacII | CCGCGG | 1 cut(s) | 148 |
| SaqAI | TTAA | 1 cut(s) | 321 |
| SatI | GCNGC | 3 cut(s) | 264, 267, 270 |
| Sau3AI | GATC | 2 cut(s) | 12, 438 |
| Sau96I | GGNCC | 3 cut(s) | 138, 189, 234 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SduI | GDGCHC | 1 cut(s) | 81 |
| SetI | ASST | 2 cut(s) | 311, 419 |
| Sfr303I | CCGCGG | 1 cut(s) | 148 |
| SgrBI | CCGCGG | 1 cut(s) | 148 |
| SinI | GGWCC | 1 cut(s) | 138 |
| Sse9I | AATT | 2 cut(s) | 247, 434 |
| SsiI | CCGC | 6 cut(s) | 61, 112, 145, 147, 266, 269 |
| SspMI | CTAG | 2 cut(s) | 104, 442 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 2 cut(s) | 25, 208 |
| TaiI | ACGT | 1 cut(s) | 311 |
| TasI | AATT | 2 cut(s) | 247, 434 |
| TauI | GCSGC | 2 cut(s) | 269, 272 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| Tru1I | TTAA | 1 cut(s) | 321 |
| Tru9I | TTAA | 1 cut(s) | 321 |
| TseFI | GTSAC | 2 cut(s) | 252, 338 |
| TseI | GCWGC | 1 cut(s) | 263 |
| Tsp45I | GTSAC | 2 cut(s) | 252, 338 |
| TspDTI | ATGAA | 2 cut(s) | 73, 183 |
| TspGWI | ACGGA | 1 cut(s) | 444 |
| Tth111I | GACNNNGTC | 1 cut(s) | 160 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XmaJI | CCTAGG | 1 cut(s) | 103 |
| XspI | CTAG | 2 cut(s) | 104, 442 |