Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

397397 .. 397864

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000776.1_g000079.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgacacggtcgacgaggacgagtacgactctatcatcgccaagcgggcttccgacgtcgtcggatgaatcggacggcaatatgaggcccaggaggaggaagacgatggagaagaaggagaaggagaaggagaaggagccgcggcccaaaaagcccaattcgtcgcttacggcagtggcggcggcggcgatgatcgggaagccgaggctttcgtcgatgttcacgtcgtcggtgtttaataaaagtagggatggtgacaaggccaaaggattgtcttatgatagcattgtggatgatgtgattgccgagtttgcgccagatgaggctgatagagagagatggaggagggcacagctggcgaggagtttcgttccgattaccggagttaagagtgagagagtgagagaggcggtgcatgtcaatggtgaggcttgggcttgggtcggatttgggtgctggatcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

155

Amino Acids

17.29

Weight (kDa)

9.75

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	45, 140, 142, 179, 182, 185, 410
AclWI	GGATC	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	96, 380
AjiI	CACGTC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	3 cut(s)	86, 143, 261
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	87, 144
AsuHPI	GGTGA	2 cut(s)	266, 437
BaeGI	GKGCMC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	107
BccI	CCATC	3 cut(s)	100, 245, 333
BceAI	ACGGC	2 cut(s)	91, 186
BciT130I	CCWGG	1 cut(s)	91
BglI	GCCNNNNNGGC	1 cut(s)	46
BisI	GCNGC	5 cut(s)	140, 143, 180, 183, 186
BlsI	GCNGC	5 cut(s)	141, 144, 181, 184, 187
Bme1390I	CCNGG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	87, 144
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bsa29I	ATCGAT	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	89, 140, 203
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 380
BseBI	CCWGG	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	89, 140, 203
BseGI	GGATG	3 cut(s)	70, 256, 298
BseLI	CCNNNNNNNGG	2 cut(s)	96, 380
BseRI	GAGGAG	3 cut(s)	109, 358, 376
BseSI	GKGCMC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	88, 145, 263
BshVI	ATCGAT	1 cut(s)	462
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	96, 380
BsnI	GGCC	3 cut(s)	88, 145, 263
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	192, 459
BspACI	CCGC	7 cut(s)	45, 140, 142, 179, 182, 185, 410
BspANI	GGCC	3 cut(s)	88, 145, 263
BspDI	ATCGAT	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	89, 140, 203
BssMI	GATC	2 cut(s)	192, 459
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	47, 357
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	70, 256, 298
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	195, 462
BstMBI	GATC	2 cut(s)	192, 459
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 151, 179, 185, 311, 356
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	88, 145, 263
BsuTUI	ATCGAT	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	2 cut(s)	21, 203
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	70, 256, 298
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	47, 357
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	87, 144
Cfr42I	CCGCGG	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	1 cut(s)	24
DpnI	GATC	2 cut(s)	194, 461
DpnII	GATC	2 cut(s)	192, 459
EcoRII	CCWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	419
FaiI	YATR	3 cut(s)	83, 279, 417
FatI	CATG	1 cut(s)	415
FauI	CCCGC	1 cut(s)	38
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	5 cut(s)	140, 143, 180, 183, 186
FokI	GGATG	3 cut(s)	77, 263, 305
Fsp4HI	GCNGC	5 cut(s)	140, 143, 180, 183, 186
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	140, 143, 180, 183, 186
HaeIII	GGCC	3 cut(s)	88, 145, 263
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	2 cut(s)	28, 68
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	266, 437
Hpy166II	GTNNAC	2 cut(s)	12, 222
Hpy188I	TCNGA	5 cut(s)	54, 64, 73, 375, 446
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	12, 222
Hpy99I	CGWCG	8 cut(s)	16, 58, 61, 64, 166, 217, 229, 232
HpyAV	CCTTC	4 cut(s)	109, 115, 121, 127
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	2 cut(s)	56, 224
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 151, 179, 185, 311, 356
HpySE526I	ACGT	2 cut(s)	56, 224
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	192, 459
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	76, 103, 330, 341, 394, 442
MaeII	ACGT	2 cut(s)	56, 224
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	194, 461
MboI	GATC	2 cut(s)	192, 459
MboII	GAAGA	2 cut(s)	112, 124
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	3 cut(s)	42, 77, 424
MseI	TTAA	2 cut(s)	237, 387
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	142, 355
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	6 cut(s)	46, 151, 179, 185, 311, 356
NdeII	GATC	2 cut(s)	192, 459
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	2 cut(s)	228, 331
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 221
PfeI	GAWTC	1 cut(s)	68
PflFI	GACNNNGTC	2 cut(s)	7, 58
PkrI	GCNGC	5 cut(s)	141, 144, 181, 184, 187
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	87, 144
PsyI	GACNNNGTC	2 cut(s)	7, 58
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	420
SacII	CCGCGG	1 cut(s)	143
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	237, 387
SatI	GCNGC	5 cut(s)	140, 143, 180, 183, 186
Sau3AI	GATC	2 cut(s)	192, 459
Sau96I	GGNCC	2 cut(s)	87, 144
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	3 cut(s)	59, 227, 357
Sfr303I	CCGCGG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	7 cut(s)	45, 140, 142, 179, 182, 185, 410
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	2 cut(s)	59, 227
TaqI	TCGA	3 cut(s)	11, 215, 462
TasI	AATT	1 cut(s)	157
TauI	GCSGC	5 cut(s)	142, 145, 182, 185, 188
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	237, 387
Tru9I	TTAA	2 cut(s)	237, 387
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	180
Tth111I	GACNNNGTC	2 cut(s)	7, 58
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.