Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

45203087 .. 45204338

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG404500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGCTTTGTTGGTGGAAATTGGGGTACATATGGTTTAACCCAGTTTTTAACAGAGCAGTGGTTGTTTTGGATGTTATGGCAGGATGGAAGGCCGCGATGACTGGTGGGGCCGGGCTTACTGATGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTTGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGATCCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGGTATAAAGAGTTGTTGCTCTTCATTTTTAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

207

Amino Acids

23.16

Weight (kDa)

5.02

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	487, 576
AccB1I	GGYRCC	1 cut(s)	436
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	96, 132, 368
AclWI	GGATC	3 cut(s)	417, 518, 531
AcuI	CTGAAG	2 cut(s)	357, 521
AfaI	GTAC	2 cut(s)	29, 498
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	308
AluBI	AGCT	3 cut(s)	304, 358, 425
AluI	AGCT	3 cut(s)	304, 358, 425
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	3 cut(s)	417, 518, 531
AoxI	GGCC	2 cut(s)	93, 111
ApeKI	GCWGC	2 cut(s)	129, 358
AspS9I	GGNCC	2 cut(s)	111, 245
AsuC2I	CCSGG	2 cut(s)	115, 521
AsuHPI	GGTGA	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	141, 345
BccI	CCATC	3 cut(s)	81, 119, 191
BcnI	CCSGG	2 cut(s)	115, 521
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	2 cut(s)	487, 576
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	5 cut(s)	96, 130, 133, 359, 369
BlsI	GCNGC	5 cut(s)	97, 131, 134, 360, 370
Bme1390I	CCNGG	2 cut(s)	115, 521
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	111, 245
BmiI	GGNNCC	3 cut(s)	112, 438, 525
BmrFI	CCNGG	2 cut(s)	115, 521
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	3 cut(s)	214, 304, 355
BmuI	ACTGGG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	115, 521
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	44, 109
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	3 cut(s)	79, 92, 319
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	44, 109
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	141, 345
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	95, 113
BshNI	GGYRCC	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	114, 520
BslI	CCNNNNNNNGG	1 cut(s)	254
BsnI	GGCC	2 cut(s)	95, 113
Bsp1286I	GDGCHC	2 cut(s)	260, 568
Bsp143I	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
BspACI	CCGC	3 cut(s)	96, 132, 368
BspANI	GGCC	2 cut(s)	95, 113
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	112, 438, 525
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	2 cut(s)	487, 576
BspPI	GGATC	3 cut(s)	417, 518, 531
BspQI	GCTCTTC	2 cut(s)	573, 611
BspT107I	GGYRCC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	44, 109
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	3 cut(s)	228, 573, 611
BstF5I	GGATG	3 cut(s)	79, 92, 319
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	6 cut(s)	187, 412, 470, 507, 526, 544
BstMBI	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	113, 519
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	141, 345
BstX2I	RGATCY	3 cut(s)	409, 523, 541
BstYI	RGATCY	3 cut(s)	409, 523, 541
BsuRI	GGCC	2 cut(s)	95, 113
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	79, 92, 319
BtsI	GCAGTG	2 cut(s)	66, 203
BtsIMutI	CAGTG	3 cut(s)	66, 203, 258
BveI	ACCTGC	2 cut(s)	487, 576
Cfr13I	GGNCC	2 cut(s)	111, 245
Csp6I	GTAC	2 cut(s)	28, 497
CviAII	CATG	3 cut(s)	217, 362, 433
CviJI	RGCY	7 cut(s)	95, 113, 118, 304, 358, 371, 425
CviKI_1	RGCY	7 cut(s)	95, 113, 118, 304, 358, 371, 425
CviQI	GTAC	2 cut(s)	28, 497
DpnI	GATC	6 cut(s)	186, 411, 469, 506, 525, 543
DpnII	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
Eam1104I	CTCTTC	3 cut(s)	228, 573, 611
EarI	CTCTTC	3 cut(s)	228, 573, 611
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	357, 521
FaeI	CATG	3 cut(s)	220, 365, 436
FatI	CATG	3 cut(s)	216, 361, 432
FauNDI	CATATG	1 cut(s)	32
Fnu4HI	GCNGC	5 cut(s)	96, 130, 133, 359, 369
FokI	GGATG	3 cut(s)	86, 99, 326
Fsp4HI	GCNGC	5 cut(s)	96, 130, 133, 359, 369
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	5 cut(s)	96, 130, 133, 359, 369
HaeIII	GGCC	2 cut(s)	95, 113
HapII	CCGG	2 cut(s)	114, 520
Hin1II	CATG	3 cut(s)	220, 365, 436
HinfI	GANTC	3 cut(s)	155, 191, 323
HpaII	CCGG	2 cut(s)	114, 520
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	196, 376, 472
Hpy188III	TCNNGA	2 cut(s)	188, 445
HpyAV	CCTTC	3 cut(s)	85, 161, 271
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	361, 482
Hsp92II	CATG	3 cut(s)	220, 365, 436
Kzo9I	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
LguI	GCTCTTC	2 cut(s)	573, 611
Lsp1109I	GCAGC	2 cut(s)	141, 345
LweI	GCATC	3 cut(s)	214, 304, 355
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	152, 201
MalI	GATC	6 cut(s)	186, 411, 469, 506, 525, 543
MboI	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
MboII	GAAGA	4 cut(s)	245, 514, 560, 598
MflI	RGATCY	3 cut(s)	409, 523, 541
MhlI	GDGCHC	2 cut(s)	260, 568
MluCI	AATT	6 cut(s)	20, 159, 377, 389, 490, 508
MlyI	GAGTC	2 cut(s)	149, 317
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	3 cut(s)	136, 313, 441
MseI	TTAA	5 cut(s)	39, 51, 282, 380, 615
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	2 cut(s)	114, 520
MspR9I	CCNGG	2 cut(s)	115, 521
MvnI	CGCG	1 cut(s)	98
NciI	CCSGG	2 cut(s)	115, 521
NdeI	CATATG	1 cut(s)	32
NdeII	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
NlaIII	CATG	3 cut(s)	220, 365, 436
NlaIV	GGNNCC	3 cut(s)	112, 438, 525
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	152, 201
NspI	RCATGY	1 cut(s)	220
PciSI	GCTCTTC	2 cut(s)	573, 611
PfeI	GAWTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	5 cut(s)	97, 131, 134, 360, 370
PleI	GAGTC	2 cut(s)	149, 317
PpsI	GAGTC	2 cut(s)	149, 317
PspN4I	GGNNCC	3 cut(s)	112, 438, 525
PspPI	GGNCC	2 cut(s)	111, 245
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	3 cut(s)	409, 523, 541
RsaI	GTAC	2 cut(s)	29, 498
RsaNI	GTAC	2 cut(s)	28, 497
SapI	GCTCTTC	2 cut(s)	573, 611
SaqAI	TTAA	5 cut(s)	39, 51, 282, 380, 615
SatI	GCNGC	5 cut(s)	96, 130, 133, 359, 369
Sau3AI	GATC	6 cut(s)	184, 409, 467, 504, 523, 541
Sau96I	GGNCC	2 cut(s)	111, 245
SbfI	CCTGCAGG	1 cut(s)	484
SchI	GAGTC	2 cut(s)	149, 317
ScrFI	CCNGG	2 cut(s)	115, 521
SdaI	CCTGCAGG	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	260, 568
SfaNI	GCATC	3 cut(s)	214, 304, 355
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse8387I	CCTGCAGG	1 cut(s)	484
Sse9I	AATT	6 cut(s)	20, 159, 377, 389, 490, 508
SsiI	CCGC	3 cut(s)	96, 132, 368
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	113, 519
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	6 cut(s)	20, 159, 377, 389, 490, 508
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	3 cut(s)	98, 135, 371
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	5 cut(s)	39, 51, 282, 380, 615
Tru9I	TTAA	5 cut(s)	39, 51, 282, 380, 615
TscAI	CASTG	3 cut(s)	66, 210, 265
TseFI	GTSAC	2 cut(s)	152, 201
TseI	GCWGC	2 cut(s)	129, 358
Tsp45I	GTSAC	2 cut(s)	152, 201
TspDTI	ATGAA	3 cut(s)	285, 402, 598
TspRI	CASTG	3 cut(s)	66, 210, 265
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.