DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 30 - 91 | 8.5e-08 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 677 |
| AciI | CCGC | 1 cut(s) | 333 |
| AclWI | GGATC | 8 cut(s) | 141, 330, 343, 378, 391, 411, 424, 459 |
| AcsI | RAATTY | 1 cut(s) | 526 |
| AcyI | GRCGYC | 1 cut(s) | 674 |
| AfaI | GTAC | 3 cut(s) | 91, 328, 571 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 413, 664 |
| AflIII | ACRYGT | 1 cut(s) | 214 |
| AgsI | TTSAA | 2 cut(s) | 556, 640 |
| AhlI | ACTAGT | 2 cut(s) | 314, 443 |
| AjnI | CCWGG | 1 cut(s) | 629 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 59, 91 |
| AluBI | AGCT | 2 cut(s) | 53, 199 |
| AluI | AGCT | 2 cut(s) | 53, 199 |
| Alw21I | GWGCWC | 2 cut(s) | 177, 665 |
| Alw44I | GTGCAC | 1 cut(s) | 661 |
| AlwI | GGATC | 8 cut(s) | 141, 330, 343, 378, 391, 411, 424, 459 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AoxI | GGCC | 1 cut(s) | 404 |
| ApaLI | GTGCAC | 1 cut(s) | 661 |
| ApeKI | GCWGC | 2 cut(s) | 50, 293 |
| ApoI | RAATTY | 1 cut(s) | 526 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 383, 415, 416, 448 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 316, 513 |
| AspS9I | GGNCC | 3 cut(s) | 357, 404, 438 |
| AsuHPI | GGTGA | 1 cut(s) | 619 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 2 cut(s) | 357, 438 |
| BaeGI | GKGCMC | 2 cut(s) | 306, 665 |
| BamHI | GGATCC | 3 cut(s) | 335, 383, 416 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BauI | CACGAG | 1 cut(s) | 182 |
| Bbv12I | GWGCWC | 2 cut(s) | 177, 665 |
| BbvI | GCAGC | 2 cut(s) | 62, 280 |
| BccI | CCATC | 4 cut(s) | 90, 347, 395, 452 |
| BceAI | ACGGC | 2 cut(s) | 72, 681 |
| BciT130I | CCWGG | 1 cut(s) | 631 |
| BcuI | ACTAGT | 2 cut(s) | 314, 443 |
| BfaI | CTAG | 2 cut(s) | 315, 444 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 2 cut(s) | 51, 294 |
| BlsI | GCNGC | 2 cut(s) | 52, 295 |
| Bme1390I | CCNGG | 1 cut(s) | 631 |
| Bme18I | GGWCC | 2 cut(s) | 357, 438 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 3 cut(s) | 357, 404, 438 |
| BmiI | GGNNCC | 8 cut(s) | 6, 245, 337, 358, 385, 418, 439, 487 |
| BmrFI | CCNGG | 1 cut(s) | 631 |
| BpmI | CTGGAG | 3 cut(s) | 93, 179, 282 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| Bsa29I | ATCGAT | 1 cut(s) | 342 |
| BsaHI | GRCGYC | 1 cut(s) | 674 |
| BsaJI | CCNNGG | 1 cut(s) | 306 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 413, 664 |
| Bse1I | ACTGG | 7 cut(s) | 205, 299, 334, 367, 376, 505, 567 |
| BseBI | CCWGG | 1 cut(s) | 631 |
| BseCI | ATCGAT | 1 cut(s) | 342 |
| BseDI | CCNNGG | 1 cut(s) | 306 |
| BseGI | GGATG | 1 cut(s) | 601 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 413, 664 |
| BseNI | ACTGG | 7 cut(s) | 205, 299, 334, 367, 376, 505, 567 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 2 cut(s) | 306, 665 |
| BseXI | GCAGC | 2 cut(s) | 62, 280 |
| BshFI | GGCC | 1 cut(s) | 406 |
| BshVI | ATCGAT | 1 cut(s) | 342 |
| BsiHKAI | GWGCWC | 2 cut(s) | 177, 665 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 413, 664 |
| BsnI | GGCC | 1 cut(s) | 406 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 4 cut(s) | 177, 262, 306, 665 |
| Bsp143I | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| Bsp19I | CCATGG | 1 cut(s) | 306 |
| BspACI | CCGC | 1 cut(s) | 333 |
| BspANI | GGCC | 1 cut(s) | 406 |
| BspDI | ATCGAT | 1 cut(s) | 342 |
| BspLI | GGNNCC | 8 cut(s) | 6, 245, 337, 358, 385, 418, 439, 487 |
| BspPI | GGATC | 8 cut(s) | 141, 330, 343, 378, 391, 411, 424, 459 |
| BsrI | ACTGG | 7 cut(s) | 205, 299, 334, 367, 376, 505, 567 |
| BssECI | CCNNGG | 1 cut(s) | 306 |
| BssMI | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| BssNI | GRCGYC | 1 cut(s) | 674 |
| BssSI | CACGAG | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 1 cut(s) | 631 |
| Bst6I | CTCTTC | 1 cut(s) | 650 |
| BstACI | GRCGYC | 1 cut(s) | 674 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDSI | CCRYGG | 1 cut(s) | 306 |
| BstEII | GGTNACC | 1 cut(s) | 682 |
| BstF5I | GGATG | 1 cut(s) | 601 |
| BstKTI | GATC | 9 cut(s) | 136, 189, 338, 346, 386, 419, 467, 475, 627 |
| BstMBI | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| BstNI | CCWGG | 1 cut(s) | 631 |
| BstNSI | RCATGY | 1 cut(s) | 218 |
| BstPI | GGTNACC | 1 cut(s) | 682 |
| BstSCI | CCNGG | 1 cut(s) | 629 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 2 cut(s) | 306, 665 |
| BstV1I | GCAGC | 2 cut(s) | 62, 280 |
| BstX2I | RGATCY | 6 cut(s) | 133, 186, 335, 383, 416, 464 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 53 |
| BstYI | RGATCY | 6 cut(s) | 133, 186, 335, 383, 416, 464 |
| Bsu15I | ATCGAT | 1 cut(s) | 342 |
| BsuRI | GGCC | 1 cut(s) | 406 |
| BsuTUI | ATCGAT | 1 cut(s) | 342 |
| BtgI | CCRYGG | 1 cut(s) | 306 |
| BtsCI | GGATG | 1 cut(s) | 601 |
| BtsIMutI | CAGTG | 2 cut(s) | 306, 360 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| Cfr13I | GGNCC | 3 cut(s) | 357, 404, 438 |
| ClaI | ATCGAT | 1 cut(s) | 342 |
| Csp6I | GTAC | 3 cut(s) | 90, 327, 570 |
| CviAII | CATG | 3 cut(s) | 70, 215, 307 |
| CviJI | RGCY | 6 cut(s) | 53, 87, 199, 260, 293, 406 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 87, 199, 260, 293, 406 |
| CviQI | GTAC | 3 cut(s) | 90, 327, 570 |
| DpnI | GATC | 9 cut(s) | 135, 188, 337, 345, 385, 418, 466, 474, 626 |
| DpnII | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| DraI | TTTAAA | 1 cut(s) | 525 |
| Eam1104I | CTCTTC | 1 cut(s) | 650 |
| EarI | CTCTTC | 1 cut(s) | 650 |
| EciI | GGCGGA | 1 cut(s) | 348 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 2 cut(s) | 357, 438 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| Eco91I | GGTNACC | 1 cut(s) | 682 |
| EcoO65I | GGTNACC | 1 cut(s) | 682 |
| EcoRII | CCWGG | 1 cut(s) | 629 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| FaeI | CATG | 3 cut(s) | 73, 218, 310 |
| FaiI | YATR | 5 cut(s) | 71, 210, 216, 308, 538 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 501, 533 |
| FatI | CATG | 3 cut(s) | 69, 214, 306 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 294 |
| FokI | GGATG | 1 cut(s) | 588 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 294 |
| FspBI | CTAG | 2 cut(s) | 315, 444 |
| GluI | GCNGC | 2 cut(s) | 51, 294 |
| GsuI | CTGGAG | 3 cut(s) | 93, 179, 282 |
| HaeIII | GGCC | 1 cut(s) | 406 |
| Hin1I | GRCGYC | 1 cut(s) | 674 |
| Hin1II | CATG | 3 cut(s) | 73, 218, 310 |
| HinfI | GANTC | 2 cut(s) | 100, 123 |
| HphI | GGTGA | 1 cut(s) | 619 |
| Hpy166II | GTNNAC | 3 cut(s) | 360, 441, 663 |
| Hpy188III | TCNNGA | 5 cut(s) | 110, 182, 247, 263, 518 |
| Hpy8I | GTNNAC | 3 cut(s) | 360, 441, 663 |
| HpyAV | CCTTC | 2 cut(s) | 503, 613 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 252, 674 |
| HpyCH4V | TGCA | 2 cut(s) | 609, 663 |
| HpySE526I | ACGT | 3 cut(s) | 144, 252, 674 |
| Hsp92I | GRCGYC | 1 cut(s) | 674 |
| Hsp92II | CATG | 3 cut(s) | 73, 218, 310 |
| Kzo9I | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| Lsp1109I | GCAGC | 2 cut(s) | 62, 280 |
| MaeI | CTAG | 2 cut(s) | 315, 444 |
| MaeII | ACGT | 3 cut(s) | 144, 252, 674 |
| MaeIII | GTNAC | 1 cut(s) | 682 |
| MalI | GATC | 9 cut(s) | 135, 188, 337, 345, 385, 418, 466, 474, 626 |
| MboI | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| MboII | GAAGA | 2 cut(s) | 534, 637 |
| MflI | RGATCY | 6 cut(s) | 133, 186, 335, 383, 416, 464 |
| MhlI | GDGCHC | 4 cut(s) | 177, 262, 306, 665 |
| MluCI | AATT | 4 cut(s) | 349, 397, 430, 526 |
| MroXI | GAANNNNTTC | 2 cut(s) | 316, 513 |
| MseI | TTAA | 2 cut(s) | 156, 524 |
| MspA1I | CMGCKG | 2 cut(s) | 53, 199 |
| MspR9I | CCNGG | 1 cut(s) | 631 |
| MvaI | CCWGG | 1 cut(s) | 631 |
| NcoI | CCATGG | 1 cut(s) | 306 |
| NdeII | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| NlaIII | CATG | 3 cut(s) | 73, 218, 310 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 245, 337, 358, 385, 418, 439, 487 |
| NspI | RCATGY | 1 cut(s) | 218 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PciI | ACATGT | 1 cut(s) | 214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 671 |
| PdmI | GAANNNNTTC | 2 cut(s) | 316, 513 |
| PfeI | GAWTC | 2 cut(s) | 100, 123 |
| PkrI | GCNGC | 2 cut(s) | 52, 295 |
| PscI | ACATGT | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 629 |
| PspEI | GGTNACC | 1 cut(s) | 682 |
| PspGI | CCWGG | 1 cut(s) | 629 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 245, 337, 358, 385, 418, 439, 487 |
| PspPI | GGNCC | 3 cut(s) | 357, 404, 438 |
| PsuI | RGATCY | 6 cut(s) | 133, 186, 335, 383, 416, 464 |
| PvuII | CAGCTG | 2 cut(s) | 53, 199 |
| RsaI | GTAC | 3 cut(s) | 91, 328, 571 |
| RsaNI | GTAC | 3 cut(s) | 90, 327, 570 |
| SaqAI | TTAA | 2 cut(s) | 156, 524 |
| SatI | GCNGC | 2 cut(s) | 51, 294 |
| Sau3AI | GATC | 9 cut(s) | 133, 186, 335, 343, 383, 416, 464, 472, 624 |
| Sau96I | GGNCC | 3 cut(s) | 357, 404, 438 |
| ScrFI | CCNGG | 1 cut(s) | 631 |
| SduI | GDGCHC | 4 cut(s) | 177, 262, 306, 665 |
| SetI | ASST | 9 cut(s) | 55, 147, 201, 255, 284, 494, 638, 677, 689 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SinI | GGWCC | 2 cut(s) | 357, 438 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmiI | ATTTAAAT | 1 cut(s) | 525 |
| SmlI | CTYRAG | 2 cut(s) | 128, 261 |
| SmoI | CTYRAG | 2 cut(s) | 128, 261 |
| SpeI | ACTAGT | 2 cut(s) | 314, 443 |
| Sse9I | AATT | 4 cut(s) | 349, 397, 430, 526 |
| SsiI | CCGC | 1 cut(s) | 333 |
| SspMI | CTAG | 2 cut(s) | 315, 444 |
| StyD4I | CCNGG | 1 cut(s) | 629 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| SwaI | ATTTAAAT | 1 cut(s) | 525 |
| TaiI | ACGT | 3 cut(s) | 147, 255, 677 |
| TaqI | TCGA | 3 cut(s) | 262, 342, 390 |
| TasI | AATT | 4 cut(s) | 349, 397, 430, 526 |
| TatI | WGTACW | 1 cut(s) | 569 |
| TfiI | GAWTC | 2 cut(s) | 100, 123 |
| Tru1I | TTAA | 2 cut(s) | 156, 524 |
| Tru9I | TTAA | 2 cut(s) | 156, 524 |
| TscAI | CASTG | 2 cut(s) | 306, 367 |
| TseI | GCWGC | 2 cut(s) | 50, 293 |
| TspDTI | ATGAA | 3 cut(s) | 290, 522, 525 |
| TspRI | CASTG | 2 cut(s) | 306, 367 |
| VneI | GTGCAC | 1 cut(s) | 661 |
| VpaK11BI | GGWCC | 2 cut(s) | 357, 438 |
| XapI | RAATTY | 1 cut(s) | 526 |
| XceI | RCATGY | 1 cut(s) | 218 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 2 cut(s) | 316, 513 |
| XspI | CTAG | 2 cut(s) | 315, 444 |
| ZraI | GACGTC | 1 cut(s) | 675 |