Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Forward (+)

15317199 .. 15317624

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1174100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGGACGACGAGCAAGCGACGGCGGCCACCGGTAGGCGGCGGGGCCGAGGACCAGAGGCGTCGGCCCGTGCCGGAGCCCTCGAACGCCTCAATGCTCTCCGTCATGGCGGCCGCCGATCTGAAACTGGCGGGTTCCAAATCAAGATGGAGGATAGAATCTACGACACCGTCGGAGACGACGAGTATGACGCAATTGTTTCCAAACGACGGGAAGAGGTCCGAGGCTTCATCGTAGACGACAATGGCCTAGGGTACTGCGATGAGGGCGAGGAAGAGGACTGGACCCGGGCGGTCCGTCATCGGATGAATCAGACGGCGGTGATAGGCCCAAGAGGAAGAAAGTCGAGAAAAAGGAAAAAGACAAGGACAAAGAGCCTCGGCCCAAAAAGTCCAATTCGTCGCTCACGGCGGCGGCTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

142

Amino Acids

16.07

Weight (kDa)

10.63

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_alpha_N	PF12254	28 - 95	3.1e-20	DNA polymerase alpha subunit p180 N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	27, 112
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	36, 39, 210
AgeI	ACCGGT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	7 cut(s)	27, 46, 66, 112, 247, 328, 382
ApeKI	GCWGC	1 cut(s)	418
AsiGI	ACCGGT	1 cut(s)	32
AspA2I	CCTAGG	1 cut(s)	250
AspS9I	GGNCC	8 cut(s)	46, 53, 67, 220, 285, 295, 329, 383
AsuC2I	CCSGG	2 cut(s)	289, 290
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	4 cut(s)	53, 220, 285, 295
AvrII	CCTAGG	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	2 cut(s)	39, 333
BcnI	CCSGG	2 cut(s)	289, 290
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	7 cut(s)	27, 41, 112, 115, 413, 416, 419
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	7 cut(s)	28, 42, 113, 116, 414, 417, 420
Bme1390I	CCNGG	2 cut(s)	289, 290
Bme18I	GGWCC	4 cut(s)	53, 220, 285, 295
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	8 cut(s)	46, 53, 67, 220, 285, 295, 329, 383
BmiI	GGNNCC	4 cut(s)	47, 79, 137, 287
BmrFI	CCNGG	2 cut(s)	289, 290
BpuMI	CCSGG	2 cut(s)	289, 290
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	5 cut(s)	49, 223, 250, 288, 379
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 39, 210
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	133, 287
BseDI	CCNNGG	5 cut(s)	49, 223, 250, 288, 379
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	36, 39, 210
BseNI	ACTGG	2 cut(s)	133, 287
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	7 cut(s)	29, 48, 68, 114, 249, 330, 384
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	33, 75, 289
BslI	CCNNNNNNNGG	3 cut(s)	36, 39, 210
BsmAI	GTCTC	1 cut(s)	171
BsmBI	CGTCTC	1 cut(s)	171
BsnI	GGCC	7 cut(s)	29, 48, 68, 114, 249, 330, 384
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	119
BspANI	GGCC	7 cut(s)	29, 48, 68, 114, 249, 330, 384
BspLI	GGNNCC	4 cut(s)	47, 79, 137, 287
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	133, 287
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	5 cut(s)	49, 223, 250, 288, 379
BssMI	GATC	1 cut(s)	119
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	210, 270
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	119
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 267, 418
BstSCI	CCNGG	2 cut(s)	287, 288
BstV1I	GCAGC	1 cut(s)	405
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	7 cut(s)	29, 48, 68, 114, 249, 330, 384
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	18
CciNI	GCGGCCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	8 cut(s)	46, 53, 67, 220, 285, 295, 329, 383
Cfr9I	CCCGGG	1 cut(s)	288
CpoI	CGGWCCG	1 cut(s)	295
CseI	GACGC	2 cut(s)	51, 200
Csp6I	GTAC	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	32
CspI	CGGWCCG	1 cut(s)	295
CviAII	CATG	1 cut(s)	107
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	27, 112
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	210, 270
EarI	CTCTTC	2 cut(s)	210, 270
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	82
Eco47I	GGWCC	4 cut(s)	53, 220, 285, 295
Eco52I	CGGCCG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	108, 189
FatI	CATG	1 cut(s)	106
FauI	CCCGC	2 cut(s)	36, 125
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	7 cut(s)	27, 41, 112, 115, 413, 416, 419
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	7 cut(s)	27, 41, 112, 115, 413, 416, 419
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	7 cut(s)	27, 41, 112, 115, 413, 416, 419
HaeIII	GGCC	7 cut(s)	29, 48, 68, 114, 249, 330, 384
HapII	CCGG	3 cut(s)	33, 75, 289
HgaI	GACGC	2 cut(s)	51, 200
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	2 cut(s)	159, 310
HpaII	CCGG	3 cut(s)	33, 75, 289
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	5 cut(s)	124, 176, 224, 306, 315
Hpy188III	TCNNGA	2 cut(s)	145, 348
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	7 cut(s)	14, 25, 67, 176, 185, 213, 405
HpyCH4III	ACNGT	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 267, 418
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	6 cut(s)	46, 69, 88, 114, 268, 302
Lsp1109I	GCAGC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	251
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	3 cut(s)	227, 287, 351
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	195, 396
MmeI	TCCRAC	1 cut(s)	154
MspI	CCGG	3 cut(s)	33, 75, 289
MspR9I	CCNGG	2 cut(s)	289, 290
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	26, 267, 418
NciI	CCSGG	2 cut(s)	289, 290
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	4 cut(s)	47, 79, 137, 287
NmeAIII	GCCGAG	2 cut(s)	74, 360
NotI	GCGGCCGC	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	159, 310
PflFI	GACNNNGTC	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	28, 42, 113, 116, 414, 417, 420
PspN4I	GGNNCC	4 cut(s)	47, 79, 137, 287
PspPI	GGNCC	8 cut(s)	46, 53, 67, 220, 285, 295, 329, 383
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
Rsr2I	CGGWCCG	1 cut(s)	295
RsrII	CGGWCCG	1 cut(s)	295
SatI	GCNGC	7 cut(s)	27, 41, 112, 115, 413, 416, 419
Sau3AI	GATC	1 cut(s)	119
Sau96I	GGNCC	8 cut(s)	46, 53, 67, 220, 285, 295, 329, 383
ScrFI	CCNGG	2 cut(s)	289, 290
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	1 cut(s)	222
SinI	GGWCC	4 cut(s)	53, 220, 285, 295
SmaI	CCCGGG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	195, 396
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	287, 288
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	84, 347
TasI	AATT	2 cut(s)	195, 396
TauI	GCSGC	6 cut(s)	29, 43, 114, 117, 415, 418
TfiI	GAWTC	2 cut(s)	159, 310
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	220, 323
TspGWI	ACGGA	2 cut(s)	92, 287
TspMI	CCCGGG	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	4 cut(s)	53, 220, 285, 295
XmaI	CCCGGG	1 cut(s)	288
XmaJI	CCTAGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.