Rmu_sc0004168.1_g000062

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004168.1
Physical Location & Seq
Reverse (-)
205993 .. 211495
5503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004168.1_g000062.1.cds

Sequence Viewer

Length: 1194 bp
ctgaccccaactcaccccgactctctctcctgctctctttccacggctattgtctctccctcattgaactactgcctccgtcccctcaccggctccatcgcctctgccagtgtttctcgtccaacaccaacacatcgttgctccgagatccgaaccccaactggtccaacctgcctccaaggagtttatcctcctcgattggtgcgacttcgagcaccaagtggcagcatggttctaaagctcgcctctctctctctctccagtagccccgctctcctctctctctctctttctctctctgtttctctctccggcacggcggcacgacgccttttctttcttcgacgagcagtggttgttttggatgttatggcaggatggaaggccgcgatgactggtggggcagggcttactggtggcagcggcaatgtggaggtcaaaagtgacacaattagtgaagggagttcggattttaatctggaatcagatgggtcactgccctattacatgcttgatgcttacgaagagttctatggacctaatatgggcactgtttatctatttgggaagaggaactatgcttttgagcgatctgacatacctataggggagaattatgtactgaagatcaattatccattccgggtgatcgtgaatgcttcgaaagatataagggtctcagcttccacaaagaaaactgtagatattcctcaagtggttgttactgcaataagtttgaaaactattatcaatgagaagcagaatgttaacgaaattgtctctgcatctgttgtctgctgtaacaaggccaaggtaagacctagaatctattttacactgccttgtgttttgctaattattgagttgtcttgttggagtgctggtatgctgagccactttactgttgtccgtaagcttgatggtggcatatttcctatggggtttactaaagtggctgcagataagaattctaaagccggatcaaatgtcttgagcattgagggcagagaagtggacaaacttctattagcccttttgcctcaagccaaacactactgcgaccacaagatcaatctcctcaagtccaatttcgaacaactcgttgaggttgcttctaagaagaaaagcatatctgatgaagctgggttagttttgcaagcaaaactgaagcagatggctcctacagcacagtag

Protein Analysis

397

Amino Acids

42.81

Weight (kDa)

9.35

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 389
AciI CCGC 4 cut(s) 270, 320, 387, 423
AclWI GGATC 2 cut(s) 142, 988
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 2 cut(s) 644, 1187
AcyI GRCGYC 1 cut(s) 328
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 89, 545
AgsI TTSAA 2 cut(s) 67, 739
AluBI AGCT 4 cut(s) 241, 683, 916, 1142
AluI AGCT 4 cut(s) 241, 683, 916, 1142
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 3 cut(s) 58, 682, 784
AlwI GGATC 2 cut(s) 142, 988
AoxI GGCC 2 cut(s) 384, 807
ApeKI GCWGC 3 cut(s) 225, 420, 956
ApoI RAATTY 1 cut(s) 967
AspS9I GGNCC 2 cut(s) 164, 536
AsuC2I CCSGG 1 cut(s) 644
AsuHPI GGTGA 3 cut(s) 5, 79, 658
AsuII TTCGAA 2 cut(s) 662, 1092
AvaII GGWCC 2 cut(s) 164, 536
BaeGI GKGCMC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 3 cut(s) 237, 432, 943
BccI CCATC 5 cut(s) 104, 372, 482, 914, 1168
BceAI ACGGC 2 cut(s) 60, 333
BcnI CCSGG 1 cut(s) 644
BcoDI GTCTC 3 cut(s) 58, 682, 784
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 4 cut(s) 603, 699, 957, 1182
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 6 cut(s) 226, 321, 387, 421, 424, 957
BlpI GCTNAGC 1 cut(s) 890
BlsI GCNGC 6 cut(s) 227, 322, 388, 422, 425, 958
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 2 cut(s) 164, 536
BmgT120I GGNCC 2 cut(s) 164, 536
BmiI GGNNCC 2 cut(s) 94, 1179
BmrFI CCNGG 1 cut(s) 644
BmsI GCATC 2 cut(s) 505, 794
BpmI CTGGAG 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 890
Bpu14I TTCGAA 2 cut(s) 662, 1092
BpuEI CTTGAG 4 cut(s) 696, 1012, 1026, 1064
BpuMI CCSGG 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 3 cut(s) 42, 178, 810
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 868, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 545
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 5 cut(s) 108, 166, 261, 400, 418
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 474
BseDI CCNNGG 3 cut(s) 42, 178, 810
BseGI GGATG 2 cut(s) 370, 383
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 89, 545
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 693, 881
BseNI ACTGG 5 cut(s) 108, 166, 261, 400, 418
BseRI GAGGAG 3 cut(s) 183, 266, 1067
BseSI GKGCMC 1 cut(s) 551
BseXI GCAGC 3 cut(s) 237, 432, 943
BseYI CCCAGC 1 cut(s) 1142
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 2 cut(s) 386, 809
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 4 cut(s) 90, 312, 643, 978
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 89, 545
BsmAI GTCTC 3 cut(s) 58, 682, 784
BsmFI GGGAC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 386, 809
Bso31I GGTCTC 1 cut(s) 682
Bsp119I TTCGAA 2 cut(s) 662, 1092
Bsp1286I GDGCHC 2 cut(s) 217, 551
Bsp143I GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
Bsp1720I GCTNAGC 1 cut(s) 890
BspACI CCGC 4 cut(s) 270, 320, 387, 423
BspANI GGCC 2 cut(s) 386, 809
BspCNI CTCAG 2 cut(s) 692, 882
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 94, 1179
BspMAI CTGCAG 1 cut(s) 961
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 142, 988
BspT104I TTCGAA 2 cut(s) 662, 1092
BspTNI GGTCTC 1 cut(s) 682
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 5 cut(s) 108, 166, 261, 400, 418
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 42, 178, 810
BssMI GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
BssNI GRCGYC 1 cut(s) 328
BssT1I CCWWGG 2 cut(s) 178, 810
Bst4CI ACNGT 4 cut(s) 553, 700, 904, 1191
Bst6I CTCTTC 2 cut(s) 519, 563
BstACI GRCGYC 1 cut(s) 328
BstBI TTCGAA 2 cut(s) 662, 1092
BstC8I GCNNGC 2 cut(s) 243, 1158
BstDEI CTNAG 3 cut(s) 679, 890, 1116
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 370, 383
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 6 cut(s) 150, 593, 630, 651, 983, 1071
BstMAI GTCTC 3 cut(s) 58, 682, 784
BstMBI GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
BstMWI GCNNNNNNNGC 2 cut(s) 1002, 1184
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 4 cut(s) 603, 699, 957, 1182
BstSLI GKGCMC 1 cut(s) 551
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 3 cut(s) 237, 432, 943
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 2 cut(s) 386, 809
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 2 cut(s) 82, 404
BtsCI GGATG 2 cut(s) 370, 383
BtsI GCAGTG 3 cut(s) 357, 494, 836
BtsIMutI CAGTG 5 cut(s) 115, 357, 494, 549, 836
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 243, 1158
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 164, 536
CseI GACGC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 620
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 2 cut(s) 229, 508
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 3 cut(s) 679, 890, 1116
DpnI GATC 6 cut(s) 149, 592, 629, 650, 982, 1070
DpnII GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
DraIII CACNNNGTG 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 519, 563
EarI CTCTTC 2 cut(s) 519, 563
Eco130I CCWWGG 2 cut(s) 178, 810
Eco31I GGTCTC 1 cut(s) 682
Eco47I GGWCC 2 cut(s) 164, 536
Eco57I CTGAAG 2 cut(s) 644, 1187
EcoRI GAATTC 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 178, 810
ErhI CCWWGG 2 cut(s) 178, 810
FaeI CATG 2 cut(s) 232, 511
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 228, 507
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 6 cut(s) 226, 321, 387, 421, 424, 957
FokI GGATG 2 cut(s) 377, 390
Fsp4HI GCNGC 6 cut(s) 226, 321, 387, 421, 424, 957
FspBI CTAG 1 cut(s) 822
GluI GCNGC 6 cut(s) 226, 321, 387, 421, 424, 957
GsaI CCCAGC 1 cut(s) 1146
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 2 cut(s) 386, 809
HapII CCGG 4 cut(s) 90, 312, 643, 978
HgaI GACGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 2 cut(s) 232, 511
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 3 cut(s) 20, 482, 825
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 4 cut(s) 90, 312, 643, 978
HphI GGTGA 3 cut(s) 5, 79, 658
Hpy166II GTNNAC 3 cut(s) 769, 945, 1015
Hpy188I TCNGA 6 cut(s) 145, 152, 469, 487, 595, 1135
Hpy188III TCNNGA 3 cut(s) 479, 652, 991
Hpy8I GTNNAC 3 cut(s) 769, 945, 1015
Hpy99I CGWCG 2 cut(s) 330, 348
HpyAV CCTTC 2 cut(s) 376, 452
HpyCH4III ACNGT 4 cut(s) 553, 700, 904, 1191
HpyCH4V TGCA 4 cut(s) 728, 785, 959, 1156
HpyF10VI GCNNNNNNNGC 2 cut(s) 1002, 1184
HpyF3I CTNAG 3 cut(s) 679, 890, 1116
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 2 cut(s) 232, 511
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
LmnI GCTCC 3 cut(s) 98, 146, 1183
Lsp1109I GCAGC 3 cut(s) 237, 432, 943
LweI GCATC 2 cut(s) 505, 794
MaeI CTAG 1 cut(s) 822
MaeIII GTNAC 4 cut(s) 443, 492, 721, 800
MalI GATC 6 cut(s) 149, 592, 629, 650, 982, 1070
MbiI CCGCTC 1 cut(s) 272
MboI GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
MboII GAAGA 5 cut(s) 332, 536, 580, 637, 1132
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 2 cut(s) 217, 551
MluCI AATT 7 cut(s) 450, 613, 631, 774, 855, 967, 1087
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 3 cut(s) 146, 191, 854
MseI TTAA 2 cut(s) 474, 768
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 4 cut(s) 90, 312, 643, 978
MspR9I CCNGG 1 cut(s) 644
Mva1269I GAATGC 1 cut(s) 661
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 2 cut(s) 1002, 1184
NciI CCSGG 1 cut(s) 644
NdeII GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
NlaIII CATG 2 cut(s) 232, 511
NlaIV GGNNCC 2 cut(s) 94, 1179
NmuCI GTSAC 2 cut(s) 443, 492
NspI RCATGY 1 cut(s) 511
NspV TTCGAA 2 cut(s) 662, 1092
PcsI WCGNNNNNNNCGW 2 cut(s) 202, 1098
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 2 cut(s) 482, 825
PkrI GCNGC 6 cut(s) 227, 322, 388, 422, 425, 958
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 1142
PspN4I GGNNCC 2 cut(s) 94, 1179
PspPI GGNCC 2 cut(s) 164, 536
PstI CTGCAG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
SaqAI TTAA 2 cut(s) 474, 768
SatI GCNGC 6 cut(s) 226, 321, 387, 421, 424, 957
Sau3AI GATC 6 cut(s) 147, 590, 627, 648, 980, 1068
Sau96I GGNCC 2 cut(s) 164, 536
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 2 cut(s) 217, 551
SfaNI GCATC 2 cut(s) 505, 794
SfcI CTRYAG 4 cut(s) 603, 699, 957, 1182
SfuI TTCGAA 2 cut(s) 662, 1092
SinI GGWCC 2 cut(s) 164, 536
SmlI CTYRAG 4 cut(s) 711, 991, 1041, 1079
SmoI CTYRAG 4 cut(s) 711, 991, 1041, 1079
Sse9I AATT 7 cut(s) 450, 613, 631, 774, 855, 967, 1087
SsiI CCGC 4 cut(s) 270, 320, 387, 423
SspMI CTAG 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 2 cut(s) 178, 810
TaaI ACNGT 4 cut(s) 553, 700, 904, 1191
TaqI TCGA 5 cut(s) 196, 211, 343, 662, 1092
TasI AATT 7 cut(s) 450, 613, 631, 774, 855, 967, 1087
TatI WGTACW 1 cut(s) 619
TauI GCSGC 3 cut(s) 323, 389, 426
TfiI GAWTC 2 cut(s) 482, 825
Tru1I TTAA 2 cut(s) 474, 768
Tru9I TTAA 2 cut(s) 474, 768
TscAI CASTG 5 cut(s) 115, 357, 501, 556, 843
TseFI GTSAC 2 cut(s) 443, 492
TseI GCWGC 3 cut(s) 225, 420, 956
Tsp45I GTSAC 2 cut(s) 443, 492
TspDTI ATGAA 1 cut(s) 1152
TspGWI ACGGA 2 cut(s) 68, 899
TspRI CASTG 5 cut(s) 115, 357, 501, 556, 843
VpaK11BI GGWCC 2 cut(s) 164, 536
XapI RAATTY 1 cut(s) 967
XceI RCATGY 1 cut(s) 511
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.