Rmu_sc0002731.1_g000005

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002731.1
Physical Location & Seq
Forward (+)
11317 .. 13983
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002731.1_g000005.1.cds

Sequence Viewer

Length: 834 bp
ctggaggcgccagagccgaggagcctgcacagtctagccccttggagcgcctccgagctctccggcaaggcggccaccgctttgaaaacgttgacgaccggttccagatcaagatggagaagccgatctatgacacggtcgacgaggacgagtacgactctatcatcgccaagagggcttccgacgtcgtcggatgaatcggacggcaatatgaggcccatgaggaggaagacgatggagaagaaggagaaggagaaggagccgcggcccaaaaagcccaattcgtcacttacggcggcgacggcggcgatgatcgggaagccgaggcttttgtcgatgttcacgtcgtcggtgtttaataaaagtagggatggtgacaaggccaaagggttgtcttatgatagcattgtggatgatgtgattgccgagtttgcgccagatgaggctgatagagagagacggaggagggcacagctggcgaggagtttcgttccgattaccggagttaagagtgagagagtgagagaggcggtgcatgtcaatgagggaagaagaagagagagggagcgagaggtcaagggagagagagaaggacgcgcggctgagaagagagaaagggagagtcaggccccaacccaagctgctaagccgccaacccaagctgccaagccgccaagccgccaaaccaacgtgccacgtcagcaggccggtcaacctcagtcaacgccggtcaaccacctccggggatttttccggccaacttccggcgattttttccgaccactttttccagcgactttccggtcagttacagtaactccgccgctacagtaa

Protein Analysis

277

Amino Acids

30.92

Weight (kDa)

11.12

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 802
AatII GACGTC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 140
AccII CGCG 3 cut(s) 265, 597, 599
AclI AACGTT 1 cut(s) 89
AcoI YGGCCR 2 cut(s) 72, 755
AcyI GRCGYC 2 cut(s) 8, 185
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 4 cut(s) 225, 500, 742, 764
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 1 cut(s) 85
AjiI CACGTC 2 cut(s) 345, 698
AluBI AGCT 4 cut(s) 58, 475, 641, 662
AluI AGCT 4 cut(s) 58, 475, 641, 662
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 451
AoxI GGCC 7 cut(s) 72, 215, 266, 381, 627, 705, 755
ApeKI GCWGC 2 cut(s) 641, 662
AsiGI ACCGGT 1 cut(s) 98
AspLEI GCGC 4 cut(s) 10, 50, 436, 599
AspS9I GGNCC 3 cut(s) 216, 267, 628
AsuC2I CCSGG 1 cut(s) 743
AsuHPI GGTGA 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 628, 649
BccI CCATC 3 cut(s) 108, 229, 365
BceAI ACGGC 3 cut(s) 220, 309, 318
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 827
BfoI RGCGCY 2 cut(s) 11, 51
BglI GCCNNNNNGGC 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 645
Bme1390I CCNGG 1 cut(s) 743
BmgBI CACGTC 2 cut(s) 345, 698
BmgT120I GGNCC 3 cut(s) 216, 267, 628
BmiI GGNNCC 5 cut(s) 9, 23, 103, 261, 630
BmrFI CCNGG 1 cut(s) 743
BpiI GAAGAC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 743
BsaHI GRCGYC 2 cut(s) 8, 185
BsaJI CCNNGG 5 cut(s) 17, 41, 263, 323, 742
BsaWI WCCGGW 3 cut(s) 98, 500, 801
BsaXI ACNNNNNCTCC 2 cut(s) 802, 832
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 500, 742, 764
Bse118I RCCGGY 3 cut(s) 98, 707, 727
BseDI CCNNGG 5 cut(s) 17, 41, 263, 323, 742
BseGI GGATG 3 cut(s) 199, 376, 418
BseLI CCNNNNNNNGG 4 cut(s) 225, 500, 742, 764
BseMII CTCAG 2 cut(s) 594, 731
BseRI GAGGAG 4 cut(s) 34, 238, 478, 496
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 628, 649
BsgI GTGCAG 1 cut(s) 11
Bsh1236I CGCG 3 cut(s) 265, 597, 599
Bsh1285I CGRYCG 2 cut(s) 99, 140
BshFI GGCC 7 cut(s) 74, 217, 268, 383, 629, 707, 757
BshNI GGYRCC 1 cut(s) 7
BshTI ACCGGT 1 cut(s) 98
BsiEI CGRYCG 2 cut(s) 99, 140
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 9 cut(s) 63, 99, 501, 708, 728, 742, 754, 765, 802
BslI CCNNNNNNNGG 4 cut(s) 225, 500, 742, 764
BsmAI GTCTC 1 cut(s) 451
BsmBI CGTCTC 1 cut(s) 451
BsnI GGCC 7 cut(s) 74, 217, 268, 383, 629, 707, 757
Bsp1286I GDGCHC 2 cut(s) 60, 472
Bsp143I GATC 3 cut(s) 107, 125, 312
Bsp1720I GCTNAGC 1 cut(s) 645
BspANI GGCC 7 cut(s) 74, 217, 268, 383, 629, 707, 757
BspCNI CTCAG 2 cut(s) 595, 730
BspFNI CGCG 3 cut(s) 265, 597, 599
BspLI GGNNCC 5 cut(s) 9, 23, 103, 261, 630
BspT107I GGYRCC 1 cut(s) 7
BsrFI RCCGGY 3 cut(s) 98, 707, 727
BssAI RCCGGY 3 cut(s) 98, 707, 727
BssECI CCNNGG 5 cut(s) 17, 41, 263, 323, 742
BssMI GATC 3 cut(s) 107, 125, 312
BssNI GRCGYC 2 cut(s) 8, 185
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 4 cut(s) 32, 138, 814, 831
Bst6I CTCTTC 2 cut(s) 550, 602
BstACI GRCGYC 2 cut(s) 8, 185
BstC8I GCNNGC 3 cut(s) 26, 477, 705
BstDEI CTNAG 3 cut(s) 603, 645, 717
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 3 cut(s) 199, 376, 418
BstFNI CGCG 3 cut(s) 265, 597, 599
BstH2I RGCGCY 2 cut(s) 11, 51
BstHHI GCGC 4 cut(s) 10, 50, 436, 599
BstKTI GATC 3 cut(s) 110, 128, 315
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 3 cut(s) 107, 125, 312
BstMCI CGRYCG 2 cut(s) 99, 140
BstMWI GCNNNNNNNGC 8 cut(s) 77, 175, 274, 302, 305, 431, 476, 700
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 741
BstSFI CTRYAG 1 cut(s) 827
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 3 cut(s) 265, 597, 599
BstV1I GCAGC 2 cut(s) 628, 649
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 7 cut(s) 74, 217, 268, 383, 629, 707, 757
BtgI CCRYGG 1 cut(s) 263
BtgZI GCGATG 2 cut(s) 150, 323
BtrI CACGTC 2 cut(s) 345, 698
BtsCI GGATG 3 cut(s) 199, 376, 418
Cac8I GCNNGC 3 cut(s) 26, 477, 705
CfoI GCGC 4 cut(s) 10, 50, 436, 599
Cfr10I RCCGGY 3 cut(s) 98, 707, 727
Cfr13I GGNCC 3 cut(s) 216, 267, 628
Cfr42I CCGCGG 1 cut(s) 266
CseI GACGC 1 cut(s) 603
Csp6I GTAC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 2 cut(s) 220, 536
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 603, 645, 717
DinI GGCGCC 1 cut(s) 9
DpnI GATC 3 cut(s) 109, 127, 314
DpnII GATC 3 cut(s) 107, 125, 312
DrdI GACNNNNNNGTC 1 cut(s) 802
DseDI GACNNNNNNGTC 1 cut(s) 802
EaeI YGGCCR 2 cut(s) 72, 755
Eam1104I CTCTTC 2 cut(s) 550, 602
EarI CTCTTC 2 cut(s) 550, 602
EciI GGCGGA 1 cut(s) 810
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 60
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 2 cut(s) 223, 539
FaiI YATR 5 cut(s) 131, 212, 221, 399, 537
FatI CATG 2 cut(s) 219, 535
FblI GTMKAC 1 cut(s) 140
FokI GGATG 3 cut(s) 206, 383, 425
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 1 cut(s) 35
GlaI GCGC 4 cut(s) 9, 49, 435, 598
GsuI CTGGAG 1 cut(s) 23
HaeII RGCGCY 2 cut(s) 11, 51
HaeIII GGCC 7 cut(s) 74, 217, 268, 383, 629, 707, 757
HapII CCGG 9 cut(s) 63, 99, 501, 708, 728, 742, 754, 765, 802
HgaI GACGC 1 cut(s) 603
HhaI GCGC 4 cut(s) 10, 50, 436, 599
Hin1I GRCGYC 2 cut(s) 8, 185
Hin1II CATG 2 cut(s) 223, 539
Hin6I GCGC 4 cut(s) 8, 48, 434, 597
HinP1I GCGC 4 cut(s) 8, 48, 434, 597
HincII GTYRAC 5 cut(s) 93, 141, 713, 723, 733
HindII GTYRAC 5 cut(s) 93, 141, 713, 723, 733
HinfI GANTC 3 cut(s) 157, 197, 622
HpaII CCGG 9 cut(s) 63, 99, 501, 708, 728, 742, 754, 765, 802
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 6 cut(s) 93, 141, 342, 713, 723, 733
Hpy188I TCNGA 6 cut(s) 55, 183, 193, 202, 495, 779
Hpy188III TCNNGA 3 cut(s) 105, 111, 316
Hpy8I GTNNAC 6 cut(s) 93, 141, 342, 713, 723, 733
Hpy99I CGWCG 7 cut(s) 145, 187, 190, 193, 304, 349, 352
HpyAV CCTTC 4 cut(s) 238, 244, 250, 584
HpyCH4III ACNGT 4 cut(s) 32, 138, 814, 831
HpyCH4IV ACGT 5 cut(s) 89, 185, 344, 690, 697
HpyCH4V TGCA 2 cut(s) 28, 535
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 175, 274, 302, 305, 431, 476, 700
HpyF3I CTNAG 3 cut(s) 603, 645, 717
HpySE526I ACGT 5 cut(s) 89, 185, 344, 690, 697
Hsp92I GRCGYC 2 cut(s) 8, 185
Hsp92II CATG 2 cut(s) 223, 539
HspAI GCGC 4 cut(s) 8, 48, 434, 597
KasI GGCGCC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 266
Kzo9I GATC 3 cut(s) 107, 125, 312
LmnI GCTCC 4 cut(s) 21, 45, 259, 565
Lsp1109I GCAGC 2 cut(s) 628, 649
MaeI CTAG 1 cut(s) 35
MaeII ACGT 5 cut(s) 89, 185, 344, 690, 697
MaeIII GTNAC 4 cut(s) 285, 374, 808, 814
MalI GATC 3 cut(s) 109, 127, 314
MboI GATC 3 cut(s) 107, 125, 312
MboII GAAGA 6 cut(s) 241, 253, 561, 564, 567, 619
MhlI GDGCHC 2 cut(s) 60, 472
MluCI AATT 1 cut(s) 280
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 151, 631
MmeI TCCRAC 3 cut(s) 171, 206, 802
MseI TTAA 2 cut(s) 357, 507
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 2 cut(s) 265, 475
MspI CCGG 9 cut(s) 63, 99, 501, 708, 728, 742, 754, 765, 802
MspR9I CCNGG 1 cut(s) 743
MvnI CGCG 3 cut(s) 265, 597, 599
MwoI GCNNNNNNNGC 8 cut(s) 77, 175, 274, 302, 305, 431, 476, 700
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 1 cut(s) 743
NdeII GATC 3 cut(s) 107, 125, 312
NlaIII CATG 2 cut(s) 223, 539
NlaIV GGNNCC 5 cut(s) 9, 23, 103, 261, 630
NmeAIII GCCGAG 3 cut(s) 42, 348, 451
NmuCI GTSAC 2 cut(s) 285, 374
NspI RCATGY 1 cut(s) 539
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 341
PfeI GAWTC 1 cut(s) 197
PflFI GACNNNGTC 2 cut(s) 136, 187
PinAI ACCGGT 1 cut(s) 98
PleI GAGTC 2 cut(s) 151, 630
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 2 cut(s) 151, 630
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 89
PspN4I GGNNCC 5 cut(s) 9, 23, 103, 261, 630
PspPI GGNCC 3 cut(s) 216, 267, 628
PsyI GACNNNGTC 2 cut(s) 136, 187
PvuII CAGCTG 1 cut(s) 475
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 1 cut(s) 60
SacII CCGCGG 1 cut(s) 266
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 357, 507
Sau3AI GATC 3 cut(s) 107, 125, 312
Sau96I GGNCC 3 cut(s) 216, 267, 628
SchI GAGTC 2 cut(s) 151, 631
ScrFI CCNGG 1 cut(s) 743
SduI GDGCHC 2 cut(s) 60, 472
SfcI CTRYAG 1 cut(s) 827
SfoI GGCGCC 1 cut(s) 9
Sfr303I CCGCGG 1 cut(s) 266
SgrBI CCGCGG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 540
Sse9I AATT 1 cut(s) 280
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 741
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 4 cut(s) 32, 138, 814, 831
TaiI ACGT 5 cut(s) 92, 188, 347, 693, 700
TaqI TCGA 2 cut(s) 140, 335
TasI AATT 1 cut(s) 280
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 2 cut(s) 357, 507
Tru9I TTAA 2 cut(s) 357, 507
TseFI GTSAC 2 cut(s) 285, 374
TseI GCWGC 2 cut(s) 641, 662
Tsp45I GTSAC 2 cut(s) 285, 374
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 475
Tth111I GACNNNGTC 2 cut(s) 136, 187
XceI RCATGY 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.