Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

65600912 .. 65610965

Gene Structure 10054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG385600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCCAAAACAATCTGAGATCCAAACACACCGAAACCCATCTCGTGGGGAACGTCGTTGCCTTGAAGAACATCAATTCTCGCAGGATATGGTCTTGGACTTTGGTTGGTGGAGAACTGGAGATCCCATAGCTTTGATTGGTGGAGATCTGGAAAAAGAGATGCGGCTCGAGGAGTTCGGGGACTTCATCGAGGACGACGATGGCCTACGGTACCGCGACGACGGCGAGGAAGAGGACTGGACCTACCGCGGACTTCCGACGTCGTCGGATGAATCGGACAGCGATATGAGGCCCAGGAGGAGGAAGAAGGTGGAGAAGAAGGAGAAGGAGAAGGAGTCGCAGCCCAAAAAGCTCAATTCGTCGCTTACGGCGGCGGCGACGATGATGGGGAAGCAGAGGCTTTCGTCGATGCTCACGTCGTCGGTGTTTAATAAAAGTAGGGATGGTGACAAGGCCAAAGGATTGTCTTGTGATAGCATTGTGGATGATGTGATTGCCAAGTTTGCGCCGGACGAGGCTGATAGAGAGAGACGAAGGAGGGCACAGCCGGCGAGGAGTTTCTTTATGATTACCGGAGTTAAGAGTAAGCAGACAGAGTTATGTCACCATCTAGTATGGCCTCTAAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

210

Amino Acids

24.32

Weight (kDa)

6.16

Isoelectric Point (pI)

66.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccII	CGCG	2 cut(s)	216, 249
AciI	CCGC	6 cut(s)	163, 214, 247, 249, 371, 374
AclWI	GGATC	2 cut(s)	13, 116
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	44, 300
AgsI	TTSAA	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	293
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
AluBI	AGCT	2 cut(s)	131, 352
AluI	AGCT	2 cut(s)	131, 352
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	2 cut(s)	13, 116
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	4 cut(s)	202, 290, 453, 617
ApeKI	GCWGC	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	240, 291
AsuHPI	GGTGA	2 cut(s)	458, 596
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	5 cut(s)	46, 194, 379, 437, 615
BceAI	ACGGC	2 cut(s)	238, 384
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	4 cut(s)	164, 341, 372, 375
BlsI	GCNGC	4 cut(s)	165, 342, 373, 376
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	240, 291
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	150, 399
BpmI	CTGGAG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	247, 293
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 300
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	121, 242
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	247, 293
BseGI	GGATG	3 cut(s)	274, 448, 490
BseLI	CCNNNNNNNGG	2 cut(s)	44, 300
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	121, 242
BseRI	GAGGAG	3 cut(s)	185, 313, 568
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	2 cut(s)	216, 249
BshFI	GGCC	4 cut(s)	204, 292, 455, 619
BshNI	GGYRCC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	509, 548, 573
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	44, 300
BsmAI	GTCTC	1 cut(s)	523
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	4 cut(s)	204, 292, 455, 619
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	18, 121, 145
BspACI	CCGC	6 cut(s)	163, 214, 247, 249, 371, 374
BspANI	GGCC	4 cut(s)	204, 292, 455, 619
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	2 cut(s)	216, 249
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	13, 116
BspT107I	GGYRCC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	121, 242
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	247, 293
BssMI	GATC	3 cut(s)	18, 121, 145
BssNI	GRCGYC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	15, 623
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	274, 448, 490
BstFNI	CGCG	2 cut(s)	216, 249
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	21, 124, 148
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	18, 121, 145
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 349, 503, 548
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	2 cut(s)	216, 249
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	3 cut(s)	18, 121, 145
BstYI	RGATCY	3 cut(s)	18, 121, 145
BsuRI	GGCC	4 cut(s)	204, 292, 455, 619
BtgI	CCRYGG	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	274, 448, 490
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	240, 291
Cfr42I	CCGCGG	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	211
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	15, 623
DpnI	GATC	3 cut(s)	20, 123, 147
DpnII	GATC	3 cut(s)	18, 121, 145
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	523
FaiI	YATR	7 cut(s)	89, 128, 287, 566, 601, 616, 631
FaqI	GGGAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	164, 341, 372, 375
FokI	GGATG	3 cut(s)	281, 455, 497
Fsp4HI	GCNGC	4 cut(s)	164, 341, 372, 375
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	4 cut(s)	164, 341, 372, 375
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	204, 292, 455, 619
HapII	CCGG	3 cut(s)	509, 548, 573
HhaI	GCGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	2 cut(s)	272, 335
HpaII	CCGG	3 cut(s)	509, 548, 573
HphI	GGTGA	2 cut(s)	458, 596
Hpy188I	TCNGA	4 cut(s)	16, 258, 268, 277
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	5 cut(s)	301, 313, 319, 325, 528
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	3 cut(s)	52, 260, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 349, 503, 548
HpyF3I	CTNAG	2 cut(s)	15, 623
HpySE526I	ACGT	3 cut(s)	52, 260, 416
Hsp92I	GRCGYC	1 cut(s)	260
HspAI	GCGC	1 cut(s)	506
KpnI	GGTACC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	547
KroNI	GCCGGC	1 cut(s)	549
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	18, 121, 145
LpnPI	CCDG	9 cut(s)	68, 102, 134, 223, 280, 307, 522, 561, 586
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	150, 399
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	3 cut(s)	52, 260, 416
MaeIII	GTNAC	2 cut(s)	446, 602
MalI	GATC	3 cut(s)	20, 123, 147
MboI	GATC	3 cut(s)	18, 121, 145
MboII	GAAGA	4 cut(s)	77, 242, 316, 328
MflI	RGATCY	3 cut(s)	18, 121, 145
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	2 cut(s)	74, 355
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	246, 281
MroNI	GCCGGC	1 cut(s)	547
MseI	TTAA	2 cut(s)	429, 579
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	3 cut(s)	509, 548, 573
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	2 cut(s)	216, 249
MwoI	GCNNNNNNNGC	4 cut(s)	222, 349, 503, 548
NaeI	GCCGGC	1 cut(s)	549
NdeII	GATC	3 cut(s)	18, 121, 145
NgoMIV	GCCGGC	1 cut(s)	547
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	446, 602
PaeR7I	CTCGAG	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	4 cut(s)	49, 195, 374, 413
PdiI	GCCGGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	165, 342, 373, 376
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	240, 291
PspXI	VCTCGAGB	1 cut(s)	167
PsuI	RGATCY	3 cut(s)	18, 121, 145
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	429, 579
SatI	GCNGC	4 cut(s)	164, 341, 372, 375
Sau3AI	GATC	3 cut(s)	18, 121, 145
Sau96I	GGNCC	2 cut(s)	240, 291
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	8 cut(s)	55, 133, 245, 263, 312, 354, 419, 629
SfaNI	GCATC	2 cut(s)	150, 399
Sfr274I	CTCGAG	1 cut(s)	167
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	74, 355
SsiI	CCGC	6 cut(s)	163, 214, 247, 249, 371, 374
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	3 cut(s)	55, 263, 419
TaqI	TCGA	3 cut(s)	168, 189, 407
TasI	AATT	2 cut(s)	74, 355
TauI	GCSGC	3 cut(s)	166, 374, 377
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	429, 579
Tru9I	TTAA	2 cut(s)	429, 579
TseFI	GTSAC	2 cut(s)	446, 602
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	446, 602
TspDTI	ATGAA	2 cut(s)	175, 285
Tth111I	GACNNNGTC	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	1 cut(s)	611
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.