Rh4DG113200

Xylulose kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
17885257 .. 17908522
23266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG113200.1

Sequence Viewer

Length: 354 bp
ATGAGATTAGTTGTTGATGAAAATATTTGGATGAAGAACGAAGGCAAGGCAGCAGAGCAAGGCCAATCAAATCTTTATGTACTGGCTCGAGCAGTAGTAGAGGGCCAGATCATGTCTATGCGAGGTCATGCAGAAAGATATGGAGTGCCTTCTCCTCCAAAACGATTGATAGCAACTGGTAGTTCATCAGTGAATCGTGCCTTCCTGTACATTGCAGCGTGTGTATTTGGATGCAATAAGTTTGACGAAATTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACAAAATTGTCTCTGCATCTATTGTCTGCTGTAACAAGGCCAAGAATACTTGA

Protein Analysis

117

Amino Acids

12.82

Weight (kDa)

9.36

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 81, 209
AgsI TTSAA 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 3 cut(s) 61, 103, 339
ApeKI GCWGC 2 cut(s) 50, 215
AspS9I GGNCC 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 87
BbvI GCAGC 2 cut(s) 62, 227
BcoDI GTCTC 1 cut(s) 316
BisI GCNGC 2 cut(s) 51, 216
BlsI GCNGC 2 cut(s) 52, 217
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 103
BmsI GCATC 2 cut(s) 221, 326
Bse1I ACTGG 2 cut(s) 87, 181
Bse3DI GCAATG 1 cut(s) 210
BseGI GGATG 2 cut(s) 36, 236
BseMI GCAATG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 87, 181
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 62, 227
BshFI GGCC 3 cut(s) 63, 105, 341
BsiHKCI CYCGRG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 3 cut(s) 63, 105, 341
BsoBI CYCGRG 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 108
BspANI GGCC 3 cut(s) 63, 105, 341
BsrDI GCAATG 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 2 cut(s) 87, 181
BssMI GATC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 207
BstF5I GGATG 2 cut(s) 36, 236
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 62, 227
BsuRI GGCC 3 cut(s) 63, 105, 341
BtsCI GGATG 2 cut(s) 36, 236
BtsIMutI CAGTG 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 80, 208
CviAII CATG 2 cut(s) 112, 128
CviJI RGCY 4 cut(s) 63, 86, 105, 341
CviKI_1 RGCY 4 cut(s) 63, 86, 105, 341
CviQI GTAC 2 cut(s) 80, 208
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 87
FaeI CATG 2 cut(s) 115, 131
FaiI YATR 5 cut(s) 78, 113, 119, 129, 141
FatI CATG 2 cut(s) 111, 127
Fnu4HI GCNGC 2 cut(s) 51, 216
FokI GGATG 2 cut(s) 43, 243
Fsp4HI GCNGC 2 cut(s) 51, 216
GluI GCNGC 2 cut(s) 51, 216
HaeIII GGCC 3 cut(s) 63, 105, 341
Hin1II CATG 2 cut(s) 115, 131
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 193
HpaI GTTAAC 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 35, 159, 211
HpyCH4V TGCA 5 cut(s) 131, 215, 234, 260, 317
Hsp92II CATG 2 cut(s) 115, 131
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 68, 119, 162, 218
Lsp1109I GCAGC 2 cut(s) 62, 227
LweI GCATC 2 cut(s) 221, 326
MaeIII GTNAC 2 cut(s) 253, 332
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 46
MluCI AATT 2 cut(s) 249, 306
MnlI CCTC 3 cut(s) 94, 116, 165
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 116
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 115, 131
PaeR7I CTCGAG 1 cut(s) 87
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 52, 217
PspPI GGNCC 1 cut(s) 103
PspXI VCTCGAGB 1 cut(s) 87
RsaI GTAC 2 cut(s) 81, 209
RsaNI GTAC 2 cut(s) 80, 208
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 51, 216
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 103
SetI ASST 1 cut(s) 127
SfaNI GCATC 2 cut(s) 221, 326
Sfr274I CTCGAG 1 cut(s) 87
SlaI CTCGAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 249, 306
SspI AATATT 1 cut(s) 25
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 249, 306
TatI WGTACW 2 cut(s) 79, 207
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 195
TseI GCWGC 2 cut(s) 50, 215
TspDTI ATGAA 3 cut(s) 33, 47, 174
TspRI CASTG 1 cut(s) 195
XhoI CTCGAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.