Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Forward (+)

70564019 .. 70570102

Gene Structure 6084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAGAGATTCAGGTGGGGAAGTTGGAATTCCCTATGAGACTTACTTTCCCTATGAGACTTACTTTCCAATGCCAGCCCCAGCAAAGGATAAACCATGGTATTCCACAGAACAAGGAAGCGTCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGTATCAATGGATGAAAAGGGACATGGCTTCAGTTGATCGATCTGAAACTCCTTGGTTGATATTTATGGGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAATTCGTTGACAAAGTTGAACCATTACTTCTGGCAAGCAAAGTTGATCTGGCGTTTTTCCCAGTGGTATTAACAATAATTGGAGTTTATCGAAGCGTGCATTATATCTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGAGTTGTTGTGCGGTTGTAAAGAACATGCAAAGATGTGTCTATGCAATTCCGGACAGTCCTTTATTTCAAACTGACGAAATGATGAAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATAATGCGGCTTCAGAATTAAAGAATGAATTAGAAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGATCCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGCGCGTTGGAACTTTTCCTTGTTAAAAGGAAGATAAAAGGACCTTCTTGGCTATCAGTTTCAAATTTTTCCATCTGCCCAGCTCCACAACGGGTAAGCTGGTGCAAATTTGAGGTGATCATGAATGCTCCGAAAGATATAAGGGTCTCAGCTTCCACAAAGAAAACTGTAGATATTCCTCAAGTGGTTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACGAAATTGTCTCTGCATCTGTTGTCTACTGTAACAAGGCCAAGGGTAAGTTCGCAACAGGTAGCTTCAAAGGGCCAAGTTGCTTACCTCTAGAAAGTGGAGGGAGGCGTCTCCTGCTGATGGTTTGCTATGAAAAGAAACAAGTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

416

Amino Acids

47.01

Weight (kDa)

8.39

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_B_exo1	PF03104	285 - 377	4e-08	DNA polymerase family B, exonuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	709
AccI	GTMKAC	2 cut(s)	257, 1122
AccII	CGCG	1 cut(s)	863
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	2 cut(s)	500, 641
AclWI	GGATC	3 cut(s)	690, 791, 804
AcsI	RAATTY	5 cut(s)	27, 163, 293, 922, 965
AcuI	CTGAAG	3 cut(s)	186, 630, 794
AcyI	GRCGYC	1 cut(s)	1204
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	3 cut(s)	85, 440, 1216
AgsI	TTSAA	8 cut(s)	141, 311, 557, 581, 921, 1066, 1165, 1244
AjnI	CCWGG	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	1130, 1162
AluBI	AGCT	8 cut(s)	577, 631, 698, 941, 957, 1010, 1161, 1247
AluI	AGCT	8 cut(s)	577, 631, 698, 941, 957, 1010, 1161, 1247
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	5 cut(s)	32, 50, 1009, 1111, 1211
AlwI	GGATC	3 cut(s)	690, 791, 804
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	1134, 1169
ApeKI	GCWGC	2 cut(s)	631, 858
ApoI	RAATTY	5 cut(s)	27, 163, 293, 922, 965
AspLEI	GCGC	1 cut(s)	863
AspS9I	GGNCC	4 cut(s)	156, 431, 899, 1169
AsuC2I	CCSGG	1 cut(s)	794
AsuHPI	GGTGA	2 cut(s)	600, 985
AvaII	GGWCC	3 cut(s)	156, 431, 899
BaeGI	GKGCMC	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	2 cut(s)	618, 870
BccI	CCATC	2 cut(s)	938, 1210
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	1 cut(s)	975
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	5 cut(s)	32, 50, 1009, 1111, 1211
BfaI	CTAG	2 cut(s)	845, 1187
BfmI	CTRYAG	2 cut(s)	753, 1026
BfuAI	ACCTGC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	3 cut(s)	632, 642, 859
BlsI	GCNGC	3 cut(s)	633, 643, 860
Bme1390I	CCNGG	2 cut(s)	270, 794
Bme18I	GGWCC	3 cut(s)	156, 431, 899
BmgT120I	GGNCC	4 cut(s)	156, 431, 899, 1169
BmiI	GGNNCC	2 cut(s)	711, 798
BmrFI	CCNGG	2 cut(s)	270, 794
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	3 cut(s)	400, 577, 1121
BmuI	ACTGGG	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	583, 1023
BpuMI	CCSGG	1 cut(s)	794
Bsa29I	ATCGAT	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	1204
BsaI	GGTCTC	1 cut(s)	1009
BsaJI	CCNNGG	5 cut(s)	95, 224, 268, 591, 1137
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 440, 1216
Bse1I	ACTGG	2 cut(s)	158, 353
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	5 cut(s)	95, 224, 268, 591, 1137
BseGI	GGATG	2 cut(s)	189, 592
BseLI	CCNNNNNNNGG	3 cut(s)	85, 440, 1216
BseMII	CTCAG	3 cut(s)	159, 269, 1020
BseNI	ACTGG	2 cut(s)	158, 353
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	618, 870
BseYI	CCCAGC	2 cut(s)	79, 937
Bsh1236I	CGCG	1 cut(s)	863
BshFI	GGCC	2 cut(s)	1136, 1171
BshNI	GGYRCC	1 cut(s)	709
BshVI	ATCGAT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	841
BsiSI	CCGG	2 cut(s)	539, 793
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	85, 440, 1216
BsmAI	GTCTC	5 cut(s)	32, 50, 1009, 1111, 1211
BsmBI	CGTCTC	1 cut(s)	1211
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	988
BsnI	GGCC	2 cut(s)	1136, 1171
Bso31I	GGTCTC	1 cut(s)	1009
Bsp1286I	GDGCHC	2 cut(s)	446, 841
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	2 cut(s)	500, 641
BspANI	GGCC	2 cut(s)	1136, 1171
BspCNI	CTCAG	3 cut(s)	160, 270, 1019
BspDI	ATCGAT	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	863
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	2 cut(s)	711, 798
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	3 cut(s)	690, 791, 804
BspQI	GCTCTTC	1 cut(s)	846
BspT107I	GGYRCC	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	1009
BsrI	ACTGG	2 cut(s)	158, 353
BssECI	CCNNGG	5 cut(s)	95, 224, 268, 591, 1137
BssMI	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
BssNAI	GTATAC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	1204
BssT1I	CCWWGG	3 cut(s)	95, 224, 1137
Bst1107I	GTATAC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	448, 545, 1027, 1127
Bst6I	CTCTTC	2 cut(s)	414, 846
BstACI	GRCGYC	1 cut(s)	1204
BstC8I	GCNNGC	3 cut(s)	75, 328, 389
BstDEI	CTNAG	3 cut(s)	168, 278, 1006
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	189, 592
BstFNI	CGCG	1 cut(s)	863
BstHHI	GCGC	1 cut(s)	863
BstKTI	GATC	9 cut(s)	211, 215, 340, 685, 743, 780, 799, 817, 978
BstMAI	GTCTC	5 cut(s)	32, 50, 1009, 1111, 1211
BstMBI	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	1210
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	2 cut(s)	406, 517
BstSCI	CCNGG	2 cut(s)	268, 792
BstSFI	CTRYAG	2 cut(s)	753, 1026
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	2 cut(s)	618, 870
BstX2I	RGATCY	3 cut(s)	682, 796, 814
BstYI	RGATCY	3 cut(s)	682, 796, 814
BstZ17I	GTATAC	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	1136, 1171
BsuTUI	ATCGAT	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	189, 592
BtsIMutI	CAGTG	2 cut(s)	360, 444
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	3 cut(s)	75, 328, 389
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	1 cut(s)	863
Cfr13I	GGNCC	4 cut(s)	156, 431, 899, 1169
ClaI	ATCGAT	1 cut(s)	211
CseI	GACGC	2 cut(s)	109, 1193
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	7 cut(s)	96, 149, 196, 403, 514, 706, 979
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	3 cut(s)	168, 278, 1006
DpnI	GATC	9 cut(s)	210, 214, 339, 684, 742, 779, 798, 816, 977
DpnII	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
Eam1104I	CTCTTC	2 cut(s)	414, 846
EarI	CTCTTC	2 cut(s)	414, 846
Eco130I	CCWWGG	3 cut(s)	95, 224, 1137
Eco31I	GGTCTC	1 cut(s)	1009
Eco47I	GGWCC	3 cut(s)	156, 431, 899
Eco57I	CTGAAG	3 cut(s)	186, 630, 794
EcoO109I	RGGNCCY	1 cut(s)	899
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	3 cut(s)	95, 224, 1137
ErhI	CCWWGG	3 cut(s)	95, 224, 1137
Esp3I	CGTCTC	1 cut(s)	1211
FaeI	CATG	7 cut(s)	99, 152, 199, 406, 517, 709, 982
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	7 cut(s)	95, 148, 195, 402, 513, 705, 978
FbaI	TGATCA	1 cut(s)	975
FblI	GTMKAC	2 cut(s)	257, 1122
Fnu4HI	GCNGC	3 cut(s)	632, 642, 859
FokI	GGATG	2 cut(s)	196, 599
Fsp4HI	GCNGC	3 cut(s)	632, 642, 859
FspBI	CTAG	2 cut(s)	845, 1187
GlaI	GCGC	1 cut(s)	862
GluI	GCNGC	3 cut(s)	632, 642, 859
GsaI	CCCAGC	2 cut(s)	83, 941
HaeIII	GGCC	2 cut(s)	1136, 1171
HapII	CCGG	2 cut(s)	539, 793
HgaI	GACGC	2 cut(s)	109, 1193
HhaI	GCGC	1 cut(s)	863
Hin1I	GRCGYC	1 cut(s)	1204
Hin1II	CATG	7 cut(s)	99, 152, 199, 406, 517, 709, 982
Hin6I	GCGC	1 cut(s)	861
HinP1I	GCGC	1 cut(s)	861
HincII	GTYRAC	2 cut(s)	301, 1096
HindII	GTYRAC	2 cut(s)	301, 1096
HindIII	AAGCTT	2 cut(s)	575, 1245
HinfI	GANTC	3 cut(s)	8, 273, 596
HpaI	GTTAAC	1 cut(s)	1096
HpaII	CCGG	2 cut(s)	539, 793
HphI	GGTGA	2 cut(s)	600, 985
Hpy166II	GTNNAC	5 cut(s)	124, 258, 301, 1096, 1123
Hpy188I	TCNGA	6 cut(s)	169, 217, 489, 649, 745, 990
Hpy188III	TCNNGA	6 cut(s)	130, 277, 539, 718, 979, 1187
Hpy8I	GTNNAC	5 cut(s)	124, 258, 301, 1096, 1123
HpyAV	CCTTC	2 cut(s)	457, 912
HpyCH4III	ACNGT	4 cut(s)	448, 545, 1027, 1127
HpyCH4V	TGCA	8 cut(s)	391, 517, 533, 634, 755, 963, 1055, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1210
HpyF3I	CTNAG	3 cut(s)	168, 278, 1006
Hsp92I	GRCGYC	1 cut(s)	1204
Hsp92II	CATG	7 cut(s)	99, 152, 199, 406, 517, 709, 982
HspAI	GCGC	1 cut(s)	861
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	975
KspAI	GTTAAC	1 cut(s)	1096
Kzo9I	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	946, 991
Lsp1109I	GCAGC	2 cut(s)	618, 870
LweI	GCATC	3 cut(s)	400, 577, 1121
MaeI	CTAG	2 cut(s)	845, 1187
MaeIII	GTNAC	2 cut(s)	1048, 1127
MalI	GATC	9 cut(s)	210, 214, 339, 684, 742, 779, 798, 816, 977
MboI	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
MboII	GAAGA	4 cut(s)	431, 787, 833, 901
MflI	RGATCY	3 cut(s)	682, 796, 814
MhlI	GDGCHC	2 cut(s)	446, 841
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	3 cut(s)	4, 660, 846
MnlI	CCTC	7 cut(s)	586, 714, 964, 1047, 1190, 1194, 1194
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	5 cut(s)	362, 468, 653, 882, 1095
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	2 cut(s)	539, 793
MspR9I	CCNGG	2 cut(s)	270, 794
Mva1269I	GAATGC	1 cut(s)	988
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	1 cut(s)	1210
NciI	CCSGG	1 cut(s)	794
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
NlaIII	CATG	7 cut(s)	99, 152, 199, 406, 517, 709, 982
NlaIV	GGNNCC	2 cut(s)	711, 798
NmeAIII	GCCGAG	1 cut(s)	616
NspI	RCATGY	2 cut(s)	406, 517
PagI	TCATGA	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	846
PctI	GAATGC	1 cut(s)	988
PfeI	GAWTC	2 cut(s)	8, 273
PfoI	TCCNGGA	1 cut(s)	792
PkrI	GCNGC	3 cut(s)	633, 643, 860
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	79, 937
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	711, 798
PspPI	GGNCC	4 cut(s)	156, 431, 899, 1169
PspPPI	RGGWCCY	1 cut(s)	899
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	682, 796, 814
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	5 cut(s)	362, 468, 653, 882, 1095
SatI	GCNGC	3 cut(s)	632, 642, 859
Sau3AI	GATC	9 cut(s)	208, 212, 337, 682, 740, 777, 796, 814, 975
Sau96I	GGNCC	4 cut(s)	156, 431, 899, 1169
SbfI	CCTGCAGG	1 cut(s)	757
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	270, 794
SdaI	CCTGCAGG	1 cut(s)	757
SduI	GDGCHC	2 cut(s)	446, 841
SfaNI	GCATC	3 cut(s)	400, 577, 1121
SfcI	CTRYAG	2 cut(s)	753, 1026
SinI	GGWCC	3 cut(s)	156, 431, 899
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	598, 1038
SmoI	CTYRAG	2 cut(s)	598, 1038
Sse8387I	CCTGCAGG	1 cut(s)	757
SsiI	CCGC	2 cut(s)	500, 641
SspMI	CTAG	2 cut(s)	845, 1187
StyD4I	CCNGG	2 cut(s)	268, 792
StyI	CCWWGG	3 cut(s)	95, 224, 1137
TaaI	ACNGT	4 cut(s)	448, 545, 1027, 1127
TaqI	TCGA	2 cut(s)	211, 382
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	8, 273
Tru1I	TTAA	5 cut(s)	362, 468, 653, 882, 1095
Tru9I	TTAA	5 cut(s)	362, 468, 653, 882, 1095
TscAI	CASTG	2 cut(s)	360, 451
TseI	GCWGC	2 cut(s)	631, 858
TspDTI	ATGAA	6 cut(s)	200, 471, 587, 675, 995, 1242
TspRI	CASTG	2 cut(s)	360, 451
VpaK11BI	GGWCC	3 cut(s)	156, 431, 899
XapI	RAATTY	5 cut(s)	27, 163, 293, 922, 965
XbaI	TCTAGA	1 cut(s)	1186
XceI	RCATGY	2 cut(s)	406, 517
XmiI	GTMKAC	2 cut(s)	257, 1122
XspI	CTAG	2 cut(s)	845, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.