DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_alpha_N | PF12254 | 3 - 46 | 5.1e-13 | DNA polymerase alpha subunit p180 N terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 161 |
| Acc65I | GGTACC | 1 cut(s) | 108 |
| AccB1I | GGYRCC | 1 cut(s) | 108 |
| AccII | CGCG | 2 cut(s) | 114, 238 |
| AciI | CCGC | 7 cut(s) | 112, 142, 236, 238, 270, 273, 276 |
| AcyI | GRCGYC | 2 cut(s) | 45, 158 |
| AfaI | GTAC | 2 cut(s) | 41, 110 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 124, 147, 198 |
| AjiI | CACGTC | 1 cut(s) | 316 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| AluBI | AGCT | 1 cut(s) | 10 |
| AluI | AGCT | 1 cut(s) | 10 |
| AoxI | GGCC | 3 cut(s) | 100, 188, 239 |
| Asp718I | GGTACC | 1 cut(s) | 108 |
| AspA2I | CCTAGG | 1 cut(s) | 103 |
| AspS9I | GGNCC | 3 cut(s) | 138, 189, 240 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| AvrII | CCTAGG | 1 cut(s) | 103 |
| BanI | GGYRCC | 1 cut(s) | 108 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 209 |
| BccI | CCATC | 3 cut(s) | 56, 170, 278 |
| BceAI | ACGGC | 2 cut(s) | 115, 283 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 104 |
| BisI | GCNGC | 5 cut(s) | 236, 239, 271, 274, 277 |
| BlnI | CCTAGG | 1 cut(s) | 103 |
| BlsI | GCNGC | 5 cut(s) | 237, 240, 272, 275, 278 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmgBI | CACGTC | 1 cut(s) | 316 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 189, 240 |
| BmiI | GGNNCC | 3 cut(s) | 110, 140, 234 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BpiI | GAAGAC | 1 cut(s) | 209 |
| BsaHI | GRCGYC | 2 cut(s) | 45, 158 |
| BsaJI | CCNNGG | 4 cut(s) | 103, 118, 191, 236 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 124, 147, 198 |
| Bse1I | ACTGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 4 cut(s) | 103, 118, 191, 236 |
| BseGI | GGATG | 2 cut(s) | 172, 181 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 124, 147, 198 |
| BseNI | ACTGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 2 cut(s) | 83, 211 |
| Bsh1236I | CGCG | 2 cut(s) | 114, 238 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 3 cut(s) | 102, 190, 241 |
| BshNI | GGYRCC | 1 cut(s) | 108 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 124, 147, 198 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsnI | GGCC | 3 cut(s) | 102, 190, 241 |
| Bsp143I | GATC | 1 cut(s) | 12 |
| BspACI | CCGC | 7 cut(s) | 112, 142, 236, 238, 270, 273, 276 |
| BspANI | GGCC | 3 cut(s) | 102, 190, 241 |
| BspFNI | CGCG | 2 cut(s) | 114, 238 |
| BspLI | GGNNCC | 3 cut(s) | 110, 140, 234 |
| BspT107I | GGYRCC | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 140 |
| BssECI | CCNNGG | 4 cut(s) | 103, 118, 191, 236 |
| BssMI | GATC | 1 cut(s) | 12 |
| BssNI | GRCGYC | 2 cut(s) | 45, 158 |
| BssT1I | CCWWGG | 2 cut(s) | 103, 118 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 208 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstACI | GRCGYC | 2 cut(s) | 45, 158 |
| BstDSI | CCRYGG | 1 cut(s) | 236 |
| BstF5I | GGATG | 2 cut(s) | 172, 181 |
| BstFNI | CGCG | 2 cut(s) | 114, 238 |
| BstKTI | GATC | 1 cut(s) | 15 |
| BstMBI | GATC | 1 cut(s) | 12 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 120, 276 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstUI | CGCG | 2 cut(s) | 114, 238 |
| BstV2I | GAAGAC | 1 cut(s) | 209 |
| BsuRI | GGCC | 3 cut(s) | 102, 190, 241 |
| BtgI | CCRYGG | 1 cut(s) | 236 |
| BtgZI | GCGATG | 2 cut(s) | 37, 294 |
| BtrI | CACGTC | 1 cut(s) | 316 |
| BtsCI | GGATG | 2 cut(s) | 172, 181 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 189, 240 |
| Cfr42I | CCGCGG | 1 cut(s) | 239 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 2 cut(s) | 40, 109 |
| CviJI | RGCY | 7 cut(s) | 10, 102, 151, 190, 235, 241, 299 |
| CviKI_1 | RGCY | 7 cut(s) | 10, 102, 151, 190, 235, 241, 299 |
| CviQI | GTAC | 2 cut(s) | 40, 109 |
| DpnI | GATC | 1 cut(s) | 14 |
| DpnII | GATC | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 2 cut(s) | 103, 118 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| EcoT14I | CCWWGG | 2 cut(s) | 103, 118 |
| ErhI | CCWWGG | 2 cut(s) | 103, 118 |
| FaiI | YATR | 1 cut(s) | 185 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FauI | CCCGC | 1 cut(s) | 149 |
| Fnu4HI | GCNGC | 5 cut(s) | 236, 239, 271, 274, 277 |
| FokI | GGATG | 2 cut(s) | 179, 188 |
| Fsp4HI | GCNGC | 5 cut(s) | 236, 239, 271, 274, 277 |
| FspBI | CTAG | 1 cut(s) | 104 |
| GluI | GCNGC | 5 cut(s) | 236, 239, 271, 274, 277 |
| HaeIII | GGCC | 3 cut(s) | 102, 190, 241 |
| HgaI | GACGC | 1 cut(s) | 53 |
| Hin1I | GRCGYC | 2 cut(s) | 45, 158 |
| HinfI | GANTC | 1 cut(s) | 170 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy166II | GTNNAC | 1 cut(s) | 313 |
| Hpy188I | TCNGA | 3 cut(s) | 156, 166, 175 |
| Hpy8I | GTNNAC | 1 cut(s) | 313 |
| Hpy99I | CGWCG | 6 cut(s) | 47, 98, 101, 160, 320, 323 |
| HpyAV | CCTTC | 3 cut(s) | 211, 217, 223 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 208 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 315 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 120, 276 |
| HpySE526I | ACGT | 2 cut(s) | 158, 315 |
| Hsp92I | GRCGYC | 2 cut(s) | 45, 158 |
| KpnI | GGTACC | 1 cut(s) | 112 |
| KspI | CCGCGG | 1 cut(s) | 239 |
| Kzo9I | GATC | 1 cut(s) | 12 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 5 cut(s) | 61, 121, 133, 178, 205 |
| MaeI | CTAG | 1 cut(s) | 104 |
| MaeII | ACGT | 2 cut(s) | 158, 315 |
| MaeIII | GTNAC | 1 cut(s) | 259 |
| MalI | GATC | 1 cut(s) | 14 |
| MboI | GATC | 1 cut(s) | 12 |
| MboII | GAAGA | 3 cut(s) | 140, 214, 226 |
| MluCI | AATT | 1 cut(s) | 254 |
| MmeI | TCCRAC | 1 cut(s) | 179 |
| MnlI | CCTC | 9 cut(s) | 25, 61, 82, 118, 124, 180, 189, 192, 289 |
| MseI | TTAA | 1 cut(s) | 328 |
| MspA1I | CMGCKG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MvnI | CGCG | 2 cut(s) | 114, 238 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 120, 276 |
| NdeII | GATC | 1 cut(s) | 12 |
| NlaIV | GGNNCC | 3 cut(s) | 110, 140, 234 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 24, 33, 93, 312 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PflFI | GACNNNGTC | 1 cut(s) | 23 |
| PkrI | GCNGC | 5 cut(s) | 237, 240, 272, 275, 278 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 3 cut(s) | 110, 140, 234 |
| PspPI | GGNCC | 3 cut(s) | 138, 189, 240 |
| PsyI | GACNNNGTC | 1 cut(s) | 23 |
| RsaI | GTAC | 2 cut(s) | 41, 110 |
| RsaNI | GTAC | 2 cut(s) | 40, 109 |
| SacII | CCGCGG | 1 cut(s) | 239 |
| SaqAI | TTAA | 1 cut(s) | 328 |
| SatI | GCNGC | 5 cut(s) | 236, 239, 271, 274, 277 |
| Sau3AI | GATC | 1 cut(s) | 12 |
| Sau96I | GGNCC | 3 cut(s) | 138, 189, 240 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SetI | ASST | 3 cut(s) | 12, 161, 318 |
| Sfr303I | CCGCGG | 1 cut(s) | 239 |
| SgrBI | CCGCGG | 1 cut(s) | 239 |
| SinI | GGWCC | 1 cut(s) | 138 |
| Sse9I | AATT | 1 cut(s) | 254 |
| SsiI | CCGC | 7 cut(s) | 112, 142, 236, 238, 270, 273, 276 |
| SspMI | CTAG | 1 cut(s) | 104 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 2 cut(s) | 103, 118 |
| TaaI | ACNGT | 2 cut(s) | 25, 208 |
| TaiI | ACGT | 2 cut(s) | 161, 318 |
| TaqI | TCGA | 3 cut(s) | 27, 87, 306 |
| TasI | AATT | 1 cut(s) | 254 |
| TauI | GCSGC | 5 cut(s) | 238, 241, 273, 276, 279 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| Tru1I | TTAA | 1 cut(s) | 328 |
| Tru9I | TTAA | 1 cut(s) | 328 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 2 cut(s) | 73, 183 |
| Tth111I | GACNNNGTC | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XmaJI | CCTAGG | 1 cut(s) | 103 |
| XspI | CTAG | 1 cut(s) | 104 |
| ZraI | GACGTC | 1 cut(s) | 159 |