DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ubiquitin | PF00240 | 211 - 243 | 7.3e-11 | Ubiquitin family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 720 |
| AclWI | GGATC | 2 cut(s) | 89, 592 |
| AcsI | RAATTY | 1 cut(s) | 571 |
| AcyI | GRCGYC | 1 cut(s) | 648 |
| AfaI | GTAC | 3 cut(s) | 5, 52, 311 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 104 |
| AflIII | ACRYGT | 1 cut(s) | 118 |
| AgsI | TTSAA | 2 cut(s) | 12, 373 |
| AjnI | CCWGG | 2 cut(s) | 103, 484 |
| AleI | CACNNNNGTG | 1 cut(s) | 458 |
| AluBI | AGCT | 3 cut(s) | 150, 188, 520 |
| AluI | AGCT | 3 cut(s) | 150, 188, 520 |
| Alw26I | GTCTC | 2 cut(s) | 186, 418 |
| AlwI | GGATC | 2 cut(s) | 89, 592 |
| AoxI | GGCC | 2 cut(s) | 205, 441 |
| ApeKI | GCWGC | 3 cut(s) | 317, 560, 609 |
| ApoI | RAATTY | 1 cut(s) | 571 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| BauI | CACGAG | 1 cut(s) | 189 |
| BbvCI | CCTCAGC | 1 cut(s) | 99 |
| BbvI | GCAGC | 3 cut(s) | 329, 547, 621 |
| BccI | CCATC | 2 cut(s) | 518, 692 |
| BciT130I | CCWGG | 2 cut(s) | 105, 486 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcoDI | GTCTC | 2 cut(s) | 186, 418 |
| BfaI | CTAG | 1 cut(s) | 710 |
| BfmI | CTRYAG | 1 cut(s) | 561 |
| BisI | GCNGC | 3 cut(s) | 318, 561, 610 |
| BlpI | GCTNAGC | 1 cut(s) | 494 |
| BlsI | GCNGC | 3 cut(s) | 319, 562, 611 |
| Bme1390I | CCNGG | 2 cut(s) | 105, 486 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| BmrFI | CCNGG | 2 cut(s) | 105, 486 |
| BmsI | GCATC | 2 cut(s) | 323, 428 |
| BpmI | CTGGAG | 1 cut(s) | 168 |
| Bpu10I | CCTNAGC | 2 cut(s) | 72, 99 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 494 |
| BpuEI | CTTGAG | 1 cut(s) | 616 |
| BsaHI | GRCGYC | 1 cut(s) | 648 |
| BsaI | GGTCTC | 1 cut(s) | 186 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bse1I | ACTGG | 1 cut(s) | 681 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseBI | CCWGG | 2 cut(s) | 105, 486 |
| BseGI | GGATG | 2 cut(s) | 338, 723 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 4 cut(s) | 86, 113, 483, 485 |
| BseNI | ACTGG | 1 cut(s) | 681 |
| BseRI | GAGGAG | 1 cut(s) | 246 |
| BseXI | GCAGC | 3 cut(s) | 329, 547, 621 |
| BshFI | GGCC | 2 cut(s) | 207, 443 |
| BsiSI | CCGG | 1 cut(s) | 582 |
| BslFI | GGGAC | 1 cut(s) | 635 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BsmAI | GTCTC | 2 cut(s) | 186, 418 |
| BsmFI | GGGAC | 1 cut(s) | 635 |
| BsnI | GGCC | 2 cut(s) | 207, 443 |
| Bso31I | GGTCTC | 1 cut(s) | 186 |
| Bsp1407I | TGTACA | 1 cut(s) | 309 |
| Bsp143I | GATC | 4 cut(s) | 94, 210, 584, 658 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 494 |
| BspANI | GGCC | 2 cut(s) | 207, 443 |
| BspCNI | CTCAG | 4 cut(s) | 85, 112, 482, 486 |
| BspMAI | CTGCAG | 1 cut(s) | 565 |
| BspPI | GGATC | 2 cut(s) | 89, 592 |
| BspTNI | GGTCTC | 1 cut(s) | 186 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrGI | TGTACA | 1 cut(s) | 309 |
| BsrI | ACTGG | 1 cut(s) | 681 |
| BssMI | GATC | 4 cut(s) | 94, 210, 584, 658 |
| BssNI | GRCGYC | 1 cut(s) | 648 |
| BssSI | CACGAG | 1 cut(s) | 189 |
| Bst2BI | CACGAG | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 2 cut(s) | 105, 486 |
| Bst4CI | ACNGT | 2 cut(s) | 67, 508 |
| Bst6I | CTCTTC | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 648 |
| BstAUI | TGTACA | 1 cut(s) | 309 |
| BstDEI | CTNAG | 5 cut(s) | 19, 72, 99, 469, 494 |
| BstF5I | GGATG | 2 cut(s) | 338, 723 |
| BstKTI | GATC | 4 cut(s) | 97, 213, 587, 661 |
| BstMAI | GTCTC | 2 cut(s) | 186, 418 |
| BstMBI | GATC | 4 cut(s) | 94, 210, 584, 658 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 606 |
| BstNI | CCWGG | 2 cut(s) | 105, 486 |
| BstNSI | RCATGY | 1 cut(s) | 122 |
| BstSCI | CCNGG | 2 cut(s) | 103, 484 |
| BstSFI | CTRYAG | 1 cut(s) | 561 |
| BstV1I | GCAGC | 3 cut(s) | 329, 547, 621 |
| BsuRI | GGCC | 2 cut(s) | 207, 443 |
| BtsCI | GGATG | 2 cut(s) | 338, 723 |
| BtsIMutI | CAGTG | 3 cut(s) | 33, 63, 297 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| CseI | GACGC | 1 cut(s) | 637 |
| Csp6I | GTAC | 3 cut(s) | 4, 51, 310 |
| CviAII | CATG | 4 cut(s) | 119, 214, 230, 614 |
| CviQI | GTAC | 3 cut(s) | 4, 51, 310 |
| DdeI | CTNAG | 5 cut(s) | 19, 72, 99, 469, 494 |
| DpnI | GATC | 4 cut(s) | 96, 212, 586, 660 |
| DpnII | GATC | 4 cut(s) | 94, 210, 584, 658 |
| Eam1104I | CTCTTC | 1 cut(s) | 473 |
| EarI | CTCTTC | 1 cut(s) | 473 |
| Eco31I | GGTCTC | 1 cut(s) | 186 |
| EcoRI | GAATTC | 1 cut(s) | 571 |
| EcoRII | CCWGG | 2 cut(s) | 103, 484 |
| FaeI | CATG | 4 cut(s) | 122, 217, 233, 617 |
| FaqI | GGGAC | 1 cut(s) | 635 |
| FatI | CATG | 4 cut(s) | 118, 213, 229, 613 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 3 cut(s) | 318, 561, 610 |
| FokI | GGATG | 2 cut(s) | 345, 710 |
| Fsp4HI | GCNGC | 3 cut(s) | 318, 561, 610 |
| FspBI | CTAG | 1 cut(s) | 710 |
| GluI | GCNGC | 3 cut(s) | 318, 561, 610 |
| GsuI | CTGGAG | 1 cut(s) | 168 |
| HaeIII | GGCC | 2 cut(s) | 207, 443 |
| HapII | CCGG | 1 cut(s) | 582 |
| HgaI | GACGC | 1 cut(s) | 637 |
| Hin1I | GRCGYC | 1 cut(s) | 648 |
| Hin1II | CATG | 4 cut(s) | 122, 217, 233, 617 |
| HincII | GTYRAC | 2 cut(s) | 139, 403 |
| HindII | GTYRAC | 2 cut(s) | 139, 403 |
| HindIII | AAGCTT | 1 cut(s) | 518 |
| HinfI | GANTC | 4 cut(s) | 23, 295, 467, 481 |
| HpaI | GTTAAC | 1 cut(s) | 403 |
| HpaII | CCGG | 1 cut(s) | 582 |
| Hpy166II | GTNNAC | 3 cut(s) | 139, 403, 549 |
| Hpy188I | TCNGA | 2 cut(s) | 472, 636 |
| Hpy188III | TCNNGA | 3 cut(s) | 191, 595, 656 |
| Hpy8I | GTNNAC | 3 cut(s) | 139, 403, 549 |
| HpyAV | CCTTC | 5 cut(s) | 107, 261, 313, 457, 638 |
| HpyCH4III | ACNGT | 2 cut(s) | 67, 508 |
| HpyCH4V | TGCA | 6 cut(s) | 233, 317, 336, 362, 419, 563 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 606 |
| HpyF3I | CTNAG | 5 cut(s) | 19, 72, 99, 469, 494 |
| Hsp92I | GRCGYC | 1 cut(s) | 648 |
| Hsp92II | CATG | 4 cut(s) | 122, 217, 233, 617 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| KspAI | GTTAAC | 1 cut(s) | 403 |
| Kzo9I | GATC | 4 cut(s) | 94, 210, 584, 658 |
| Lsp1109I | GCAGC | 3 cut(s) | 329, 547, 621 |
| LweI | GCATC | 2 cut(s) | 323, 428 |
| MaeI | CTAG | 1 cut(s) | 710 |
| MaeIII | GTNAC | 2 cut(s) | 167, 434 |
| MalI | GATC | 4 cut(s) | 96, 212, 586, 660 |
| MboI | GATC | 4 cut(s) | 94, 210, 584, 658 |
| MboII | GAAGA | 2 cut(s) | 490, 707 |
| MfeI | CAATTG | 1 cut(s) | 689 |
| MluCI | AATT | 5 cut(s) | 351, 366, 408, 571, 689 |
| MlyI | GAGTC | 3 cut(s) | 17, 461, 490 |
| MnlI | CCTC | 6 cut(s) | 108, 196, 218, 267, 598, 663 |
| MseI | TTAA | 1 cut(s) | 402 |
| MslI | CAYNNNNRTG | 3 cut(s) | 158, 218, 458 |
| MspI | CCGG | 1 cut(s) | 582 |
| MspR9I | CCNGG | 2 cut(s) | 105, 486 |
| MunI | CAATTG | 1 cut(s) | 689 |
| MvaI | CCWGG | 2 cut(s) | 105, 486 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 606 |
| NdeII | GATC | 4 cut(s) | 94, 210, 584, 658 |
| NlaIII | CATG | 4 cut(s) | 122, 217, 233, 617 |
| NspI | RCATGY | 1 cut(s) | 122 |
| OliI | CACNNNNGTG | 1 cut(s) | 458 |
| PciI | ACATGT | 1 cut(s) | 118 |
| PfeI | GAWTC | 1 cut(s) | 295 |
| PkrI | GCNGC | 3 cut(s) | 319, 562, 611 |
| PleI | GAGTC | 3 cut(s) | 17, 461, 489 |
| PpsI | GAGTC | 3 cut(s) | 17, 461, 489 |
| PscI | ACATGT | 1 cut(s) | 118 |
| PsiI | TTATAA | 1 cut(s) | 720 |
| Psp6I | CCWGG | 2 cut(s) | 103, 484 |
| PspGI | CCWGG | 2 cut(s) | 103, 484 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| PstI | CTGCAG | 1 cut(s) | 565 |
| RsaI | GTAC | 3 cut(s) | 5, 52, 311 |
| RsaNI | GTAC | 3 cut(s) | 4, 51, 310 |
| RseI | CAYNNNNRTG | 3 cut(s) | 158, 218, 458 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| SatI | GCNGC | 3 cut(s) | 318, 561, 610 |
| Sau3AI | GATC | 4 cut(s) | 94, 210, 584, 658 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| SchI | GAGTC | 3 cut(s) | 17, 461, 490 |
| ScrFI | CCNGG | 2 cut(s) | 105, 486 |
| SetI | ASST | 5 cut(s) | 78, 152, 190, 229, 522 |
| SfaNI | GCATC | 2 cut(s) | 323, 428 |
| SfcI | CTRYAG | 1 cut(s) | 561 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 158, 218, 458 |
| SmlI | CTYRAG | 1 cut(s) | 595 |
| SmoI | CTYRAG | 1 cut(s) | 595 |
| Sse9I | AATT | 5 cut(s) | 351, 366, 408, 571, 689 |
| SspMI | CTAG | 1 cut(s) | 710 |
| StyD4I | CCNGG | 2 cut(s) | 103, 484 |
| TaaI | ACNGT | 2 cut(s) | 67, 508 |
| TasI | AATT | 5 cut(s) | 351, 366, 408, 571, 689 |
| TatI | WGTACW | 3 cut(s) | 3, 50, 309 |
| TfiI | GAWTC | 1 cut(s) | 295 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TscAI | CASTG | 3 cut(s) | 40, 70, 297 |
| TseI | GCWGC | 3 cut(s) | 317, 560, 609 |
| TspDTI | ATGAA | 1 cut(s) | 276 |
| TspGWI | ACGGA | 1 cut(s) | 503 |
| TspRI | CASTG | 3 cut(s) | 40, 70, 297 |
| XapI | RAATTY | 1 cut(s) | 571 |
| XceI | RCATGY | 1 cut(s) | 122 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 688 |
| XspI | CTAG | 1 cut(s) | 710 |