DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_B_exo1 | PF03104 | 261 - 353 | 3.6e-08 | DNA polymerase family B, exonuclease domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 688 |
| AccB1I | GGYRCC | 1 cut(s) | 637 |
| AccI | GTMKAC | 2 cut(s) | 188, 1050 |
| AccII | CGCG | 1 cut(s) | 791 |
| AccIII | TCCGGA | 1 cut(s) | 466 |
| AciI | CCGC | 2 cut(s) | 428, 569 |
| AclWI | GGATC | 4 cut(s) | 311, 618, 719, 732 |
| AcsI | RAATTY | 5 cut(s) | 94, 224, 278, 850, 893 |
| AcuI | CTGAAG | 3 cut(s) | 117, 558, 722 |
| AcyI | GRCGYC | 1 cut(s) | 1132 |
| AfaI | GTAC | 1 cut(s) | 699 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 16, 1144 |
| AgsI | TTSAA | 8 cut(s) | 72, 242, 485, 509, 849, 994, 1093, 1172 |
| AjnI | CCWGG | 1 cut(s) | 199 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1058, 1090 |
| AluBI | AGCT | 8 cut(s) | 505, 559, 626, 869, 885, 938, 1089, 1175 |
| AluI | AGCT | 8 cut(s) | 505, 559, 626, 869, 885, 938, 1089, 1175 |
| Alw21I | GWGCWC | 1 cut(s) | 769 |
| Alw26I | GTCTC | 3 cut(s) | 937, 1039, 1139 |
| AlwI | GGATC | 4 cut(s) | 311, 618, 719, 732 |
| Aor13HI | TCCGGA | 1 cut(s) | 466 |
| AoxI | GGCC | 2 cut(s) | 1062, 1097 |
| ApeKI | GCWGC | 2 cut(s) | 559, 786 |
| ApoI | RAATTY | 5 cut(s) | 94, 224, 278, 850, 893 |
| AspLEI | GCGC | 1 cut(s) | 791 |
| AspS9I | GGNCC | 3 cut(s) | 87, 827, 1097 |
| AsuC2I | CCSGG | 1 cut(s) | 722 |
| AsuHPI | GGTGA | 2 cut(s) | 528, 913 |
| AvaII | GGWCC | 2 cut(s) | 87, 827 |
| BaeGI | GKGCMC | 1 cut(s) | 337 |
| BamHI | GGATCC | 1 cut(s) | 724 |
| BanI | GGYRCC | 1 cut(s) | 637 |
| Bbv12I | GWGCWC | 1 cut(s) | 769 |
| BbvI | GCAGC | 2 cut(s) | 546, 798 |
| BccI | CCATC | 2 cut(s) | 866, 1138 |
| BciT130I | CCWGG | 1 cut(s) | 201 |
| BclI | TGATCA | 2 cut(s) | 316, 903 |
| BcnI | CCSGG | 1 cut(s) | 722 |
| BcoDI | GTCTC | 3 cut(s) | 937, 1039, 1139 |
| BfaI | CTAG | 2 cut(s) | 773, 1115 |
| BfmI | CTRYAG | 3 cut(s) | 328, 681, 954 |
| BfuAI | ACCTGC | 1 cut(s) | 688 |
| BglII | AGATCT | 1 cut(s) | 742 |
| BisI | GCNGC | 3 cut(s) | 560, 570, 787 |
| BlsI | GCNGC | 3 cut(s) | 561, 571, 788 |
| Bme1390I | CCNGG | 2 cut(s) | 201, 722 |
| Bme18I | GGWCC | 2 cut(s) | 87, 827 |
| BmgT120I | GGNCC | 3 cut(s) | 87, 827, 1097 |
| BmiI | GGNNCC | 2 cut(s) | 639, 726 |
| BmrFI | CCNGG | 2 cut(s) | 201, 722 |
| BmrI | ACTGGG | 2 cut(s) | 332, 381 |
| BmsI | GCATC | 2 cut(s) | 505, 1049 |
| BmuI | ACTGGG | 2 cut(s) | 332, 381 |
| BpuEI | CTTGAG | 2 cut(s) | 511, 951 |
| BpuMI | CCSGG | 1 cut(s) | 722 |
| Bsa29I | ATCGAT | 1 cut(s) | 142 |
| BsaHI | GRCGYC | 1 cut(s) | 1132 |
| BsaI | GGTCTC | 1 cut(s) | 937 |
| BsaJI | CCNNGG | 6 cut(s) | 26, 155, 199, 372, 519, 1065 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 16, 1144 |
| Bse1I | ACTGG | 3 cut(s) | 89, 338, 387 |
| BseAI | TCCGGA | 1 cut(s) | 466 |
| BseBI | CCWGG | 1 cut(s) | 201 |
| BseCI | ATCGAT | 1 cut(s) | 142 |
| BseDI | CCNNGG | 6 cut(s) | 26, 155, 199, 372, 519, 1065 |
| BseGI | GGATG | 2 cut(s) | 120, 520 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 16, 1144 |
| BseMII | CTCAG | 3 cut(s) | 90, 200, 948 |
| BseNI | ACTGG | 3 cut(s) | 89, 338, 387 |
| BseSI | GKGCMC | 1 cut(s) | 337 |
| BseXI | GCAGC | 2 cut(s) | 546, 798 |
| BseYI | CCCAGC | 3 cut(s) | 10, 299, 865 |
| Bsh1236I | CGCG | 1 cut(s) | 791 |
| BshFI | GGCC | 2 cut(s) | 1064, 1099 |
| BshNI | GGYRCC | 1 cut(s) | 637 |
| BshVI | ATCGAT | 1 cut(s) | 142 |
| BsiHKAI | GWGCWC | 1 cut(s) | 769 |
| BsiSI | CCGG | 2 cut(s) | 467, 721 |
| BslFI | GGGAC | 1 cut(s) | 137 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 16, 1144 |
| BsmAI | GTCTC | 3 cut(s) | 937, 1039, 1139 |
| BsmBI | CGTCTC | 1 cut(s) | 1139 |
| BsmFI | GGGAC | 1 cut(s) | 137 |
| BsmI | GAATGC | 1 cut(s) | 916 |
| BsnI | GGCC | 2 cut(s) | 1064, 1099 |
| Bso31I | GGTCTC | 1 cut(s) | 937 |
| Bsp1286I | GDGCHC | 2 cut(s) | 337, 769 |
| Bsp13I | TCCGGA | 1 cut(s) | 466 |
| Bsp19I | CCATGG | 1 cut(s) | 26 |
| BspACI | CCGC | 2 cut(s) | 428, 569 |
| BspANI | GGCC | 2 cut(s) | 1064, 1099 |
| BspCNI | CTCAG | 3 cut(s) | 91, 201, 947 |
| BspDI | ATCGAT | 1 cut(s) | 142 |
| BspEI | TCCGGA | 1 cut(s) | 466 |
| BspFNI | CGCG | 1 cut(s) | 791 |
| BspHI | TCATGA | 1 cut(s) | 906 |
| BspLI | GGNNCC | 2 cut(s) | 639, 726 |
| BspMAI | CTGCAG | 1 cut(s) | 685 |
| BspMI | ACCTGC | 1 cut(s) | 688 |
| BspPI | GGATC | 4 cut(s) | 311, 618, 719, 732 |
| BspQI | GCTCTTC | 1 cut(s) | 774 |
| BspT107I | GGYRCC | 1 cut(s) | 637 |
| BspTNI | GGTCTC | 1 cut(s) | 937 |
| BsrI | ACTGG | 3 cut(s) | 89, 338, 387 |
| BssECI | CCNNGG | 6 cut(s) | 26, 155, 199, 372, 519, 1065 |
| BssNAI | GTATAC | 1 cut(s) | 189 |
| BssNI | GRCGYC | 1 cut(s) | 1132 |
| BssT1I | CCWWGG | 4 cut(s) | 26, 155, 372, 1065 |
| Bst1107I | GTATAC | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 1 cut(s) | 201 |
| Bst4CI | ACNGT | 4 cut(s) | 332, 473, 955, 1055 |
| Bst6I | CTCTTC | 1 cut(s) | 774 |
| BstACI | GRCGYC | 1 cut(s) | 1132 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 259, 345, 364 |
| BstDEI | CTNAG | 3 cut(s) | 99, 209, 934 |
| BstDSI | CCRYGG | 1 cut(s) | 26 |
| BstF5I | GGATG | 2 cut(s) | 120, 520 |
| BstFNI | CGCG | 1 cut(s) | 791 |
| BstHHI | GCGC | 1 cut(s) | 791 |
| BstMAI | GTCTC | 3 cut(s) | 937, 1039, 1139 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1138 |
| BstNI | CCWGG | 1 cut(s) | 201 |
| BstNSI | RCATGY | 1 cut(s) | 445 |
| BstSCI | CCNGG | 2 cut(s) | 199, 720 |
| BstSFI | CTRYAG | 3 cut(s) | 328, 681, 954 |
| BstSLI | GKGCMC | 1 cut(s) | 337 |
| BstUI | CGCG | 1 cut(s) | 791 |
| BstV1I | GCAGC | 2 cut(s) | 546, 798 |
| BstX2I | RGATCY | 3 cut(s) | 610, 724, 742 |
| BstYI | RGATCY | 3 cut(s) | 610, 724, 742 |
| BstZ17I | GTATAC | 1 cut(s) | 189 |
| Bsu15I | ATCGAT | 1 cut(s) | 142 |
| BsuRI | GGCC | 2 cut(s) | 1064, 1099 |
| BsuTUI | ATCGAT | 1 cut(s) | 142 |
| BtgI | CCRYGG | 1 cut(s) | 26 |
| BtsCI | GGATG | 2 cut(s) | 120, 520 |
| BtsIMutI | CAGTG | 3 cut(s) | 337, 345, 394 |
| BveI | ACCTGC | 1 cut(s) | 688 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 259, 345, 364 |
| CciI | TCATGA | 1 cut(s) | 906 |
| CfoI | GCGC | 1 cut(s) | 791 |
| Cfr13I | GGNCC | 3 cut(s) | 87, 827, 1097 |
| ClaI | ATCGAT | 1 cut(s) | 142 |
| CseI | GACGC | 2 cut(s) | 40, 1121 |
| Csp6I | GTAC | 1 cut(s) | 698 |
| CviAII | CATG | 7 cut(s) | 27, 80, 127, 274, 442, 634, 907 |
| CviQI | GTAC | 1 cut(s) | 698 |
| DdeI | CTNAG | 3 cut(s) | 99, 209, 934 |
| Eam1104I | CTCTTC | 1 cut(s) | 774 |
| EarI | CTCTTC | 1 cut(s) | 774 |
| Eco130I | CCWWGG | 4 cut(s) | 26, 155, 372, 1065 |
| Eco31I | GGTCTC | 1 cut(s) | 937 |
| Eco47I | GGWCC | 2 cut(s) | 87, 827 |
| Eco57I | CTGAAG | 3 cut(s) | 117, 558, 722 |
| EcoO109I | RGGNCCY | 1 cut(s) | 827 |
| EcoRII | CCWGG | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 4 cut(s) | 26, 155, 372, 1065 |
| EcoT22I | ATGCAT | 1 cut(s) | 275 |
| ErhI | CCWWGG | 4 cut(s) | 26, 155, 372, 1065 |
| Esp3I | CGTCTC | 1 cut(s) | 1139 |
| FaeI | CATG | 7 cut(s) | 30, 83, 130, 277, 445, 637, 910 |
| FaqI | GGGAC | 1 cut(s) | 137 |
| FatI | CATG | 7 cut(s) | 26, 79, 126, 273, 441, 633, 906 |
| FauNDI | CATATG | 1 cut(s) | 313 |
| FbaI | TGATCA | 2 cut(s) | 316, 903 |
| FblI | GTMKAC | 2 cut(s) | 188, 1050 |
| Fnu4HI | GCNGC | 3 cut(s) | 560, 570, 787 |
| FokI | GGATG | 2 cut(s) | 127, 527 |
| Fsp4HI | GCNGC | 3 cut(s) | 560, 570, 787 |
| FspBI | CTAG | 2 cut(s) | 773, 1115 |
| GlaI | GCGC | 1 cut(s) | 790 |
| GluI | GCNGC | 3 cut(s) | 560, 570, 787 |
| GsaI | CCCAGC | 3 cut(s) | 14, 303, 869 |
| HaeIII | GGCC | 2 cut(s) | 1064, 1099 |
| HapII | CCGG | 2 cut(s) | 467, 721 |
| HgaI | GACGC | 2 cut(s) | 40, 1121 |
| HhaI | GCGC | 1 cut(s) | 791 |
| Hin1I | GRCGYC | 1 cut(s) | 1132 |
| Hin1II | CATG | 7 cut(s) | 30, 83, 130, 277, 445, 637, 910 |
| Hin6I | GCGC | 1 cut(s) | 789 |
| HinP1I | GCGC | 1 cut(s) | 789 |
| HincII | GTYRAC | 2 cut(s) | 232, 1024 |
| HindII | GTYRAC | 2 cut(s) | 232, 1024 |
| HindIII | AAGCTT | 2 cut(s) | 503, 1173 |
| HinfI | GANTC | 2 cut(s) | 204, 524 |
| HpaI | GTTAAC | 1 cut(s) | 1024 |
| HpaII | CCGG | 2 cut(s) | 467, 721 |
| HphI | GGTGA | 2 cut(s) | 528, 913 |
| Hpy166II | GTNNAC | 5 cut(s) | 55, 189, 232, 1024, 1051 |
| Hpy188I | TCNGA | 6 cut(s) | 100, 148, 417, 577, 673, 918 |
| Hpy188III | TCNNGA | 6 cut(s) | 61, 208, 467, 646, 907, 1115 |
| Hpy8I | GTNNAC | 5 cut(s) | 55, 189, 232, 1024, 1051 |
| HpyAV | CCTTC | 1 cut(s) | 840 |
| HpyCH4III | ACNGT | 4 cut(s) | 332, 473, 955, 1055 |
| HpyCH4V | TGCA | 9 cut(s) | 273, 288, 445, 461, 562, 683, 891, 983, 1040 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1138 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 209, 934 |
| Hsp92I | GRCGYC | 1 cut(s) | 1132 |
| Hsp92II | CATG | 7 cut(s) | 30, 83, 130, 277, 445, 637, 910 |
| HspAI | GCGC | 1 cut(s) | 789 |
| Kpn2I | TCCGGA | 1 cut(s) | 466 |
| Ksp22I | TGATCA | 2 cut(s) | 316, 903 |
| KspAI | GTTAAC | 1 cut(s) | 1024 |
| LguI | GCTCTTC | 1 cut(s) | 774 |
| LmnI | GCTCC | 2 cut(s) | 874, 919 |
| Lsp1109I | GCAGC | 2 cut(s) | 546, 798 |
| LweI | GCATC | 2 cut(s) | 505, 1049 |
| MaeI | CTAG | 2 cut(s) | 773, 1115 |
| MaeIII | GTNAC | 2 cut(s) | 976, 1055 |
| MboII | GAAGA | 3 cut(s) | 715, 761, 829 |
| MflI | RGATCY | 3 cut(s) | 610, 724, 742 |
| MhlI | GDGCHC | 2 cut(s) | 337, 769 |
| MlyI | GAGTC | 1 cut(s) | 518 |
| MmeI | TCCRAC | 2 cut(s) | 588, 774 |
| MnlI | CCTC | 8 cut(s) | 289, 514, 642, 892, 975, 1118, 1122, 1122 |
| Mph1103I | ATGCAT | 1 cut(s) | 275 |
| MroI | TCCGGA | 1 cut(s) | 466 |
| MseI | TTAA | 4 cut(s) | 396, 581, 810, 1023 |
| MslI | CAYNNNNRTG | 1 cut(s) | 62 |
| MspI | CCGG | 2 cut(s) | 467, 721 |
| MspR9I | CCNGG | 2 cut(s) | 201, 722 |
| Mva1269I | GAATGC | 1 cut(s) | 916 |
| MvaI | CCWGG | 1 cut(s) | 201 |
| MvnI | CGCG | 1 cut(s) | 791 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1138 |
| NciI | CCSGG | 1 cut(s) | 722 |
| NcoI | CCATGG | 1 cut(s) | 26 |
| NdeI | CATATG | 1 cut(s) | 313 |
| NlaIII | CATG | 7 cut(s) | 30, 83, 130, 277, 445, 637, 910 |
| NlaIV | GGNNCC | 2 cut(s) | 639, 726 |
| NmeAIII | GCCGAG | 1 cut(s) | 544 |
| NsiI | ATGCAT | 1 cut(s) | 275 |
| NspI | RCATGY | 1 cut(s) | 445 |
| PagI | TCATGA | 1 cut(s) | 906 |
| PciSI | GCTCTTC | 1 cut(s) | 774 |
| PctI | GAATGC | 1 cut(s) | 916 |
| PfeI | GAWTC | 1 cut(s) | 204 |
| PfoI | TCCNGGA | 1 cut(s) | 720 |
| PkrI | GCNGC | 3 cut(s) | 561, 571, 788 |
| PleI | GAGTC | 1 cut(s) | 518 |
| PpsI | GAGTC | 1 cut(s) | 518 |
| PpuMI | RGGWCCY | 1 cut(s) | 827 |
| Psp5II | RGGWCCY | 1 cut(s) | 827 |
| Psp6I | CCWGG | 1 cut(s) | 199 |
| PspFI | CCCAGC | 3 cut(s) | 10, 299, 865 |
| PspGI | CCWGG | 1 cut(s) | 199 |
| PspN4I | GGNNCC | 2 cut(s) | 639, 726 |
| PspPI | GGNCC | 3 cut(s) | 87, 827, 1097 |
| PspPPI | RGGWCCY | 1 cut(s) | 827 |
| PstI | CTGCAG | 1 cut(s) | 685 |
| PsuI | RGATCY | 3 cut(s) | 610, 724, 742 |
| RsaI | GTAC | 1 cut(s) | 699 |
| RsaNI | GTAC | 1 cut(s) | 698 |
| RseI | CAYNNNNRTG | 1 cut(s) | 62 |
| SapI | GCTCTTC | 1 cut(s) | 774 |
| SaqAI | TTAA | 4 cut(s) | 396, 581, 810, 1023 |
| SatI | GCNGC | 3 cut(s) | 560, 570, 787 |
| Sau96I | GGNCC | 3 cut(s) | 87, 827, 1097 |
| SbfI | CCTGCAGG | 1 cut(s) | 685 |
| SchI | GAGTC | 1 cut(s) | 518 |
| ScrFI | CCNGG | 2 cut(s) | 201, 722 |
| SdaI | CCTGCAGG | 1 cut(s) | 685 |
| SduI | GDGCHC | 2 cut(s) | 337, 769 |
| SfaNI | GCATC | 2 cut(s) | 505, 1049 |
| SfcI | CTRYAG | 3 cut(s) | 328, 681, 954 |
| SinI | GGWCC | 2 cut(s) | 87, 827 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 62 |
| SmlI | CTYRAG | 2 cut(s) | 526, 966 |
| SmoI | CTYRAG | 2 cut(s) | 526, 966 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 685 |
| SsiI | CCGC | 2 cut(s) | 428, 569 |
| SspMI | CTAG | 2 cut(s) | 773, 1115 |
| StyD4I | CCNGG | 2 cut(s) | 199, 720 |
| StyI | CCWWGG | 4 cut(s) | 26, 155, 372, 1065 |
| TaaI | ACNGT | 4 cut(s) | 332, 473, 955, 1055 |
| TaqI | TCGA | 2 cut(s) | 142, 306 |
| TatI | WGTACW | 1 cut(s) | 697 |
| TauI | GCSGC | 1 cut(s) | 572 |
| TfiI | GAWTC | 1 cut(s) | 204 |
| Tru1I | TTAA | 4 cut(s) | 396, 581, 810, 1023 |
| Tru9I | TTAA | 4 cut(s) | 396, 581, 810, 1023 |
| TscAI | CASTG | 3 cut(s) | 337, 345, 394 |
| TseI | GCWGC | 2 cut(s) | 559, 786 |
| TspDTI | ATGAA | 7 cut(s) | 131, 290, 399, 515, 603, 923, 1170 |
| TspRI | CASTG | 3 cut(s) | 337, 345, 394 |
| VpaK11BI | GGWCC | 2 cut(s) | 87, 827 |
| XapI | RAATTY | 5 cut(s) | 94, 224, 278, 850, 893 |
| XbaI | TCTAGA | 1 cut(s) | 1114 |
| XceI | RCATGY | 1 cut(s) | 445 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 355 |
| XmiI | GTMKAC | 2 cut(s) | 188, 1050 |
| XspI | CTAG | 2 cut(s) | 773, 1115 |
| Zsp2I | ATGCAT | 1 cut(s) | 275 |