DNA polymerase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 28 |
| AclWI | GGATC | 1 cut(s) | 529 |
| AcsI | RAATTY | 2 cut(s) | 82, 233 |
| AfaI | GTAC | 3 cut(s) | 216, 566, 574 |
| AgsI | TTSAA | 3 cut(s) | 81, 123, 334 |
| AjnI | CCWGG | 1 cut(s) | 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 419 |
| AluBI | AGCT | 5 cut(s) | 101, 225, 278, 481, 589 |
| AluI | AGCT | 5 cut(s) | 101, 225, 278, 481, 589 |
| Alw26I | GTCTC | 3 cut(s) | 131, 277, 379 |
| AlwI | GGATC | 1 cut(s) | 529 |
| AoxI | GGCC | 1 cut(s) | 402 |
| ApeKI | GCWGC | 1 cut(s) | 23 |
| ApoI | RAATTY | 2 cut(s) | 82, 233 |
| AspLEI | GCGC | 1 cut(s) | 28 |
| AspS9I | GGNCC | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 124, 253 |
| AsuNHI | GCTAGC | 1 cut(s) | 589 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| BbvI | GCAGC | 1 cut(s) | 35 |
| BccI | CCATC | 2 cut(s) | 98, 479 |
| BciT130I | CCWGG | 1 cut(s) | 447 |
| BcoDI | GTCTC | 3 cut(s) | 131, 277, 379 |
| BfaI | CTAG | 1 cut(s) | 590 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BglII | AGATCT | 1 cut(s) | 116 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlpI | GCTNAGC | 1 cut(s) | 455 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| Bme1390I | CCNGG | 1 cut(s) | 447 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 1 cut(s) | 59 |
| BmrFI | CCNGG | 1 cut(s) | 447 |
| BmsI | GCATC | 2 cut(s) | 389, 550 |
| BmtI | GCTAGC | 1 cut(s) | 593 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 2 cut(s) | 291, 553 |
| BsaI | GGTCTC | 1 cut(s) | 277 |
| BseBI | CCWGG | 1 cut(s) | 447 |
| BseMII | CTCAG | 3 cut(s) | 288, 444, 446 |
| BseXI | GCAGC | 1 cut(s) | 35 |
| BseYI | CCCAGC | 1 cut(s) | 97 |
| Bsh1236I | CGCG | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 404 |
| BsiSI | CCGG | 1 cut(s) | 519 |
| BsmAI | GTCTC | 3 cut(s) | 131, 277, 379 |
| BsmI | GAATGC | 1 cut(s) | 256 |
| BsnI | GGCC | 1 cut(s) | 404 |
| Bso31I | GGTCTC | 1 cut(s) | 277 |
| Bsp1407I | TGTACA | 1 cut(s) | 214 |
| Bsp143I | GATC | 3 cut(s) | 116, 243, 521 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 455 |
| BspANI | GGCC | 1 cut(s) | 404 |
| BspCNI | CTCAG | 3 cut(s) | 287, 443, 447 |
| BspFNI | CGCG | 1 cut(s) | 28 |
| BspOI | GCTAGC | 1 cut(s) | 593 |
| BspPI | GGATC | 1 cut(s) | 529 |
| BspTNI | GGTCTC | 1 cut(s) | 277 |
| BsrGI | TGTACA | 1 cut(s) | 214 |
| BssMI | GATC | 3 cut(s) | 116, 243, 521 |
| Bst2UI | CCWGG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 295, 469 |
| Bst6I | CTCTTC | 1 cut(s) | 434 |
| BstAUI | TGTACA | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 4 cut(s) | 548, 581, 591, 595 |
| BstDEI | CTNAG | 4 cut(s) | 146, 274, 430, 455 |
| BstFNI | CGCG | 1 cut(s) | 28 |
| BstHHI | GCGC | 1 cut(s) | 28 |
| BstKTI | GATC | 3 cut(s) | 119, 246, 524 |
| BstMAI | GTCTC | 3 cut(s) | 131, 277, 379 |
| BstMBI | GATC | 3 cut(s) | 116, 243, 521 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 543 |
| BstNI | CCWGG | 1 cut(s) | 447 |
| BstNSI | RCATGY | 2 cut(s) | 583, 597 |
| BstSCI | CCNGG | 1 cut(s) | 445 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstUI | CGCG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 1 cut(s) | 35 |
| BstX2I | RGATCY | 1 cut(s) | 116 |
| BstYI | RGATCY | 1 cut(s) | 116 |
| BsuRI | GGCC | 1 cut(s) | 404 |
| Cac8I | GCNNGC | 4 cut(s) | 548, 581, 591, 595 |
| CfoI | GCGC | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 1 cut(s) | 59 |
| Csp6I | GTAC | 3 cut(s) | 215, 565, 573 |
| CviAII | CATG | 2 cut(s) | 580, 594 |
| CviQI | GTAC | 3 cut(s) | 215, 565, 573 |
| DdeI | CTNAG | 4 cut(s) | 146, 274, 430, 455 |
| DpnI | GATC | 3 cut(s) | 118, 245, 523 |
| DpnII | GATC | 3 cut(s) | 116, 243, 521 |
| Eam1104I | CTCTTC | 1 cut(s) | 434 |
| EarI | CTCTTC | 1 cut(s) | 434 |
| Eco31I | GGTCTC | 1 cut(s) | 277 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| EcoRII | CCWGG | 1 cut(s) | 445 |
| FaeI | CATG | 2 cut(s) | 583, 597 |
| FatI | CATG | 2 cut(s) | 579, 593 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| FspBI | CTAG | 1 cut(s) | 590 |
| GlaI | GCGC | 1 cut(s) | 27 |
| GluI | GCNGC | 1 cut(s) | 24 |
| GsaI | CCCAGC | 1 cut(s) | 101 |
| HaeIII | GGCC | 1 cut(s) | 404 |
| HapII | CCGG | 1 cut(s) | 519 |
| HhaI | GCGC | 1 cut(s) | 28 |
| Hin1II | CATG | 2 cut(s) | 583, 597 |
| Hin6I | GCGC | 1 cut(s) | 26 |
| HinP1I | GCGC | 1 cut(s) | 26 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 1 cut(s) | 479 |
| HinfI | GANTC | 2 cut(s) | 428, 442 |
| HpaI | GTTAAC | 1 cut(s) | 364 |
| HpaII | CCGG | 1 cut(s) | 519 |
| HphI | GGTGA | 3 cut(s) | 121, 124, 253 |
| Hpy166II | GTNNAC | 2 cut(s) | 364, 510 |
| Hpy188I | TCNGA | 3 cut(s) | 258, 433, 611 |
| Hpy188III | TCNNGA | 3 cut(s) | 247, 532, 557 |
| Hpy8I | GTNNAC | 2 cut(s) | 364, 510 |
| HpyAV | CCTTC | 2 cut(s) | 72, 418 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 295, 469 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 231, 323, 380, 579 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 543 |
| HpyF3I | CTNAG | 4 cut(s) | 146, 274, 430, 455 |
| Hsp92II | CATG | 2 cut(s) | 583, 597 |
| HspAI | GCGC | 1 cut(s) | 26 |
| KspAI | GTTAAC | 1 cut(s) | 364 |
| Kzo9I | GATC | 3 cut(s) | 116, 243, 521 |
| LmnI | GCTCC | 2 cut(s) | 106, 259 |
| LpnPI | CCDG | 9 cut(s) | 111, 167, 203, 211, 432, 432, 459, 532, 532 |
| Lsp1109I | GCAGC | 1 cut(s) | 35 |
| LweI | GCATC | 2 cut(s) | 389, 550 |
| MaeI | CTAG | 1 cut(s) | 590 |
| MaeIII | GTNAC | 2 cut(s) | 316, 395 |
| MalI | GATC | 3 cut(s) | 118, 245, 523 |
| MboI | GATC | 3 cut(s) | 116, 243, 521 |
| MboII | GAAGA | 3 cut(s) | 111, 451, 598 |
| MflI | RGATCY | 1 cut(s) | 116 |
| MluCI | AATT | 3 cut(s) | 82, 233, 369 |
| MlyI | GAGTC | 2 cut(s) | 422, 451 |
| MmeI | TCCRAC | 1 cut(s) | 11 |
| MnlI | CCTC | 3 cut(s) | 232, 315, 535 |
| MseI | TTAA | 3 cut(s) | 47, 194, 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 419 |
| MspI | CCGG | 1 cut(s) | 519 |
| MspR9I | CCNGG | 1 cut(s) | 447 |
| Mva1269I | GAATGC | 1 cut(s) | 256 |
| MvaI | CCWGG | 1 cut(s) | 447 |
| MvnI | CGCG | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 543 |
| NdeII | GATC | 3 cut(s) | 116, 243, 521 |
| NheI | GCTAGC | 1 cut(s) | 589 |
| NlaIII | CATG | 2 cut(s) | 583, 597 |
| NspI | RCATGY | 2 cut(s) | 583, 597 |
| OliI | CACNNNNGTG | 1 cut(s) | 419 |
| PaeI | GCATGC | 2 cut(s) | 583, 597 |
| PctI | GAATGC | 1 cut(s) | 256 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PleI | GAGTC | 2 cut(s) | 422, 450 |
| PpsI | GAGTC | 2 cut(s) | 422, 450 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| Psp6I | CCWGG | 1 cut(s) | 445 |
| PspFI | CCCAGC | 1 cut(s) | 97 |
| PspGI | CCWGG | 1 cut(s) | 445 |
| PspPI | GGNCC | 1 cut(s) | 59 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 116 |
| RsaI | GTAC | 3 cut(s) | 216, 566, 574 |
| RsaNI | GTAC | 3 cut(s) | 215, 565, 573 |
| RseI | CAYNNNNRTG | 1 cut(s) | 419 |
| SaqAI | TTAA | 3 cut(s) | 47, 194, 363 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau3AI | GATC | 3 cut(s) | 116, 243, 521 |
| Sau96I | GGNCC | 1 cut(s) | 59 |
| SchI | GAGTC | 2 cut(s) | 422, 451 |
| ScrFI | CCNGG | 1 cut(s) | 447 |
| SetI | ASST | 8 cut(s) | 64, 103, 222, 227, 243, 280, 483, 591 |
| SfaNI | GCATC | 2 cut(s) | 389, 550 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| SinI | GGWCC | 1 cut(s) | 59 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 419 |
| SmlI | CTYRAG | 2 cut(s) | 306, 532 |
| SmoI | CTYRAG | 2 cut(s) | 306, 532 |
| SphI | GCATGC | 2 cut(s) | 583, 597 |
| Sse9I | AATT | 3 cut(s) | 82, 233, 369 |
| SspMI | CTAG | 1 cut(s) | 590 |
| StyD4I | CCNGG | 1 cut(s) | 445 |
| TaaI | ACNGT | 3 cut(s) | 214, 295, 469 |
| TasI | AATT | 3 cut(s) | 82, 233, 369 |
| TatI | WGTACW | 1 cut(s) | 214 |
| Tru1I | TTAA | 3 cut(s) | 47, 194, 363 |
| Tru9I | TTAA | 3 cut(s) | 47, 194, 363 |
| TseI | GCWGC | 1 cut(s) | 23 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 464 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| XapI | RAATTY | 2 cut(s) | 82, 233 |
| XceI | RCATGY | 2 cut(s) | 583, 597 |
| XspI | CTAG | 1 cut(s) | 590 |