DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_alpha_N | PF12254 | 2 - 46 | 5.3e-12 | DNA polymerase alpha subunit p180 N terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 108 |
| AccB1I | GGYRCC | 1 cut(s) | 108 |
| AccII | CGCG | 3 cut(s) | 147, 180, 238 |
| AciI | CCGC | 4 cut(s) | 145, 178, 236, 238 |
| AcsI | RAATTY | 1 cut(s) | 80 |
| AcyI | GRCGYC | 1 cut(s) | 45 |
| AfaI | GTAC | 2 cut(s) | 41, 110 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 198 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| AoxI | GGCC | 4 cut(s) | 100, 188, 239, 269 |
| ApoI | RAATTY | 1 cut(s) | 80 |
| Asp718I | GGTACC | 1 cut(s) | 108 |
| AspA2I | CCTAGG | 1 cut(s) | 103 |
| AspS9I | GGNCC | 3 cut(s) | 138, 189, 240 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| AvrII | CCTAGG | 1 cut(s) | 103 |
| BanI | GGYRCC | 1 cut(s) | 108 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 2 cut(s) | 138, 209 |
| BccI | CCATC | 2 cut(s) | 56, 253 |
| BceAI | ACGGC | 2 cut(s) | 115, 136 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 55, 89 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 104 |
| BisI | GCNGC | 2 cut(s) | 145, 239 |
| BlnI | CCTAGG | 1 cut(s) | 103 |
| BlsI | GCNGC | 2 cut(s) | 146, 240 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 189, 240 |
| BmiI | GGNNCC | 2 cut(s) | 110, 234 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BpiI | GAAGAC | 2 cut(s) | 138, 209 |
| BsaHI | GRCGYC | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 3 cut(s) | 103, 191, 236 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 198 |
| Bse1I | ACTGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 3 cut(s) | 103, 191, 236 |
| BseGI | GGATG | 3 cut(s) | 172, 264, 306 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 1 cut(s) | 211 |
| Bsh1236I | CGCG | 3 cut(s) | 147, 180, 238 |
| BshFI | GGCC | 4 cut(s) | 102, 190, 241, 271 |
| BshNI | GGYRCC | 1 cut(s) | 108 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BsnI | GGCC | 4 cut(s) | 102, 190, 241, 271 |
| Bsp143I | GATC | 1 cut(s) | 12 |
| BspACI | CCGC | 4 cut(s) | 145, 178, 236, 238 |
| BspANI | GGCC | 4 cut(s) | 102, 190, 241, 271 |
| BspFNI | CGCG | 3 cut(s) | 147, 180, 238 |
| BspLI | GGNNCC | 2 cut(s) | 110, 234 |
| BspT107I | GGYRCC | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 140 |
| BssECI | CCNNGG | 3 cut(s) | 103, 191, 236 |
| BssMI | GATC | 1 cut(s) | 12 |
| BssNI | GRCGYC | 1 cut(s) | 45 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstACI | GRCGYC | 1 cut(s) | 45 |
| BstDSI | CCRYGG | 1 cut(s) | 236 |
| BstF5I | GGATG | 3 cut(s) | 172, 264, 306 |
| BstFNI | CGCG | 3 cut(s) | 147, 180, 238 |
| BstKTI | GATC | 1 cut(s) | 15 |
| BstMBI | GATC | 1 cut(s) | 12 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstUI | CGCG | 3 cut(s) | 147, 180, 238 |
| BstV2I | GAAGAC | 2 cut(s) | 138, 209 |
| BsuRI | GGCC | 4 cut(s) | 102, 190, 241, 271 |
| BtgI | CCRYGG | 1 cut(s) | 236 |
| BtgZI | GCGATG | 1 cut(s) | 37 |
| BtsCI | GGATG | 3 cut(s) | 172, 264, 306 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 189, 240 |
| Cfr42I | CCGCGG | 1 cut(s) | 239 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 2 cut(s) | 40, 109 |
| CviJI | RGCY | 7 cut(s) | 10, 102, 144, 190, 241, 249, 271 |
| CviKI_1 | RGCY | 7 cut(s) | 10, 102, 144, 190, 241, 249, 271 |
| CviQI | GTAC | 2 cut(s) | 40, 109 |
| DpnI | GATC | 1 cut(s) | 14 |
| DpnII | GATC | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaiI | YATR | 1 cut(s) | 185 |
| Fnu4HI | GCNGC | 2 cut(s) | 145, 239 |
| FokI | GGATG | 2 cut(s) | 179, 271 |
| Fsp4HI | GCNGC | 2 cut(s) | 145, 239 |
| FspBI | CTAG | 1 cut(s) | 104 |
| GluI | GCNGC | 2 cut(s) | 145, 239 |
| HaeIII | GGCC | 4 cut(s) | 102, 190, 241, 271 |
| HgaI | GACGC | 1 cut(s) | 53 |
| Hin1I | GRCGYC | 1 cut(s) | 45 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 2 cut(s) | 151, 170 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 1 cut(s) | 28 |
| Hpy188I | TCNGA | 4 cut(s) | 156, 166, 175, 258 |
| Hpy8I | GTNNAC | 1 cut(s) | 28 |
| Hpy99I | CGWCG | 5 cut(s) | 47, 98, 101, 122, 166 |
| HpyAV | CCTTC | 1 cut(s) | 211 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| Hsp92I | GRCGYC | 1 cut(s) | 45 |
| KpnI | GGTACC | 1 cut(s) | 112 |
| KspI | CCGCGG | 1 cut(s) | 239 |
| Kzo9I | GATC | 1 cut(s) | 12 |
| LpnPI | CCDG | 4 cut(s) | 121, 154, 178, 205 |
| MaeI | CTAG | 1 cut(s) | 104 |
| MaeIII | GTNAC | 1 cut(s) | 262 |
| MalI | GATC | 1 cut(s) | 14 |
| MboI | GATC | 1 cut(s) | 12 |
| MboII | GAAGA | 4 cut(s) | 140, 143, 214, 226 |
| MluCI | AATT | 2 cut(s) | 80, 252 |
| MmeI | TCCRAC | 1 cut(s) | 144 |
| MnlI | CCTC | 5 cut(s) | 25, 118, 180, 189, 192 |
| MspA1I | CMGCKG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MvnI | CGCG | 3 cut(s) | 147, 180, 238 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NdeII | GATC | 1 cut(s) | 12 |
| NlaIV | GGNNCC | 2 cut(s) | 110, 234 |
| NmuCI | GTSAC | 1 cut(s) | 262 |
| PfeI | GAWTC | 2 cut(s) | 151, 170 |
| PkrI | GCNGC | 2 cut(s) | 146, 240 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 2 cut(s) | 110, 234 |
| PspPI | GGNCC | 3 cut(s) | 138, 189, 240 |
| RsaI | GTAC | 2 cut(s) | 41, 110 |
| RsaNI | GTAC | 2 cut(s) | 40, 109 |
| SacII | CCGCGG | 1 cut(s) | 239 |
| SatI | GCNGC | 2 cut(s) | 145, 239 |
| Sau3AI | GATC | 1 cut(s) | 12 |
| Sau96I | GGNCC | 3 cut(s) | 138, 189, 240 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SetI | ASST | 1 cut(s) | 27 |
| Sfr303I | CCGCGG | 1 cut(s) | 239 |
| SgrBI | CCGCGG | 1 cut(s) | 239 |
| SinI | GGWCC | 1 cut(s) | 138 |
| Sse9I | AATT | 2 cut(s) | 80, 252 |
| SsiI | CCGC | 4 cut(s) | 145, 178, 236, 238 |
| SspMI | CTAG | 1 cut(s) | 104 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TasI | AATT | 2 cut(s) | 80, 252 |
| TauI | GCSGC | 2 cut(s) | 147, 241 |
| TfiI | GAWTC | 2 cut(s) | 151, 170 |
| TseFI | GTSAC | 1 cut(s) | 262 |
| Tsp45I | GTSAC | 1 cut(s) | 262 |
| TspDTI | ATGAA | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XapI | RAATTY | 1 cut(s) | 80 |
| XmaJI | CCTAGG | 1 cut(s) | 103 |
| XspI | CTAG | 1 cut(s) | 104 |