Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

26037296 .. 26044251

Gene Structure 6956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG247200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCTCCGACGACCTCTCCTTCGTGTCCACCACCGCTGCTACAAGAGCCCCAAGGCCTGGCCTGTTCGCGTTGTTCCTCTACCACATGTTTCTCGCTCCTCGATCTCATGTTGACTTTCTCTGTATTATCTCTAAGCTTTCAAAGGAAGATCGTAGATTGAAGGTTTTCAAGAAGGAGTGGTTTGAAGGCAAGGACTGTCTTGACATTGGTTGCTATTCTGGGGTTATCACTATACAAATCGGATGGAAGGCCGCGATGACTGGTGGGGCCGGGCTTACTGGTGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTCGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGTATATAACTCAACCAGTATGAAATCAATAGGGTTATTAGGTAGCACTAAAGTGACCTTCAATCGCAAATCAACTGTATTACAGCTTCTTGCTCATAGATGTTTGGAGTTTCATAGGTCGTTGCTGTTTAACGTTGCCTGTGAAGCAGAGATGCATAATGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

282

Amino Acids

31.41

Weight (kDa)

6.61

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	2 cut(s)	71, 257
AciI	CCGC	4 cut(s)	36, 255, 291, 527
AclI	AACGTT	1 cut(s)	813
AclWI	GGATC	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	516, 680
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	2 cut(s)	59, 413
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	6 cut(s)	144, 163, 172, 188, 467, 742
AjnI	CCWGG	1 cut(s)	58
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	5 cut(s)	139, 463, 517, 584, 766
AluI	AGCT	5 cut(s)	139, 463, 517, 584, 766
AlwI	GGATC	1 cut(s)	576
AoxI	GGCC	5 cut(s)	3, 56, 61, 252, 270
ApeKI	GCWGC	3 cut(s)	38, 288, 517
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	270, 404
AsuC2I	CCSGG	2 cut(s)	274, 680
AsuHPI	GGTGA	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	52
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
BbvI	GCAGC	3 cut(s)	25, 300, 504
BccI	CCATC	2 cut(s)	240, 350
BciT130I	CCWGG	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	274, 680
BfmI	CTRYAG	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	6 cut(s)	39, 255, 289, 292, 518, 528
BlsI	GCNGC	6 cut(s)	40, 256, 290, 293, 519, 529
Bme1390I	CCNGG	3 cut(s)	60, 274, 680
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	270, 404
BmiI	GGNNCC	2 cut(s)	271, 597
BmrFI	CCNGG	3 cut(s)	60, 274, 680
BmsI	GCATC	4 cut(s)	373, 463, 514, 822
BpuEI	CTTGAG	1 cut(s)	469
BpuMI	CCSGG	2 cut(s)	274, 680
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	53, 477
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 413
Bse1I	ACTGG	3 cut(s)	268, 286, 696
Bse3DI	GCAATG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	53, 477
BseGI	GGATG	2 cut(s)	251, 478
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	59, 413
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	3 cut(s)	268, 286, 696
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	3 cut(s)	25, 300, 504
Bsh1236I	CGCG	2 cut(s)	71, 257
BshFI	GGCC	5 cut(s)	5, 58, 63, 254, 272
BshNI	GGYRCC	1 cut(s)	595
BsiSI	CCGG	2 cut(s)	273, 679
BslI	CCNNNNNNNGG	2 cut(s)	59, 413
BsnI	GGCC	5 cut(s)	5, 58, 63, 254, 272
Bsp1286I	GDGCHC	2 cut(s)	52, 419
Bsp143I	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
BspACI	CCGC	4 cut(s)	36, 255, 291, 527
BspANI	GGCC	5 cut(s)	5, 58, 63, 254, 272
BspFNI	CGCG	2 cut(s)	71, 257
BspLI	GGNNCC	2 cut(s)	271, 597
BspMAI	CTGCAG	1 cut(s)	643
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	268, 286, 696
BssECI	CCNNGG	2 cut(s)	53, 477
BssMI	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	200, 421, 757
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	251, 478
BstFNI	CGCG	2 cut(s)	71, 257
BstKTI	GATC	6 cut(s)	107, 154, 346, 571, 629, 666
BstMBI	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 824
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	91, 379
BstSCI	CCNGG	3 cut(s)	58, 272, 678
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	419
BstUI	CGCG	2 cut(s)	71, 257
BstV1I	GCAGC	3 cut(s)	25, 300, 504
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	5 cut(s)	5, 58, 63, 254, 272
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	251, 478
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	362, 417
BveI	ACCTGC	1 cut(s)	646
Cfr13I	GGNCC	2 cut(s)	270, 404
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	5 cut(s)	88, 110, 376, 521, 592
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	6 cut(s)	106, 153, 345, 570, 628, 665
DpnII	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	2 cut(s)	516, 680
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	837
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	5 cut(s)	91, 113, 379, 524, 595
FatI	CATG	5 cut(s)	87, 109, 375, 520, 591
Fnu4HI	GCNGC	6 cut(s)	39, 255, 289, 292, 518, 528
FokI	GGATG	2 cut(s)	258, 485
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	6 cut(s)	39, 255, 289, 292, 518, 528
GluI	GCNGC	6 cut(s)	39, 255, 289, 292, 518, 528
HaeIII	GGCC	5 cut(s)	5, 58, 63, 254, 272
HapII	CCGG	2 cut(s)	273, 679
Hin1II	CATG	5 cut(s)	91, 113, 379, 524, 595
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	314, 350, 482
HpaII	CCGG	2 cut(s)	273, 679
HphI	GGTGA	1 cut(s)	486
Hpy166II	GTNNAC	2 cut(s)	30, 115
Hpy188I	TCNGA	6 cut(s)	10, 245, 337, 355, 535, 631
Hpy188III	TCNNGA	4 cut(s)	172, 203, 347, 604
Hpy8I	GTNNAC	2 cut(s)	30, 115
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	8 cut(s)	31, 157, 169, 182, 244, 320, 430, 748
HpyCH4III	ACNGT	3 cut(s)	200, 421, 757
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	4 cut(s)	520, 641, 835, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 824
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	5 cut(s)	91, 113, 379, 524, 595
Kzo9I	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	3 cut(s)	25, 300, 504
LweI	GCATC	4 cut(s)	373, 463, 514, 822
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	3 cut(s)	311, 360, 733
MalI	GATC	6 cut(s)	106, 153, 345, 570, 628, 665
MboI	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
MboII	GAAGA	3 cut(s)	161, 404, 673
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	52, 419
MluCI	AATT	5 cut(s)	318, 536, 548, 649, 667
MlyI	GAGTC	2 cut(s)	308, 476
MmeI	TCCRAC	2 cut(s)	33, 546
MnlI	CCTC	7 cut(s)	16, 26, 89, 111, 295, 472, 600
Mph1103I	ATGCAT	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	441, 539, 810
MslI	CAYNNNNRTG	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	38, 291
MspI	CCGG	2 cut(s)	273, 679
MspR9I	CCNGG	3 cut(s)	60, 274, 680
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	71, 257
MwoI	GCNNNNNNNGC	2 cut(s)	47, 824
NciI	CCSGG	2 cut(s)	274, 680
NdeII	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
NlaIII	CATG	5 cut(s)	91, 113, 379, 524, 595
NlaIV	GGNNCC	2 cut(s)	271, 597
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	3 cut(s)	311, 360, 733
NsiI	ATGCAT	1 cut(s)	837
NspI	RCATGY	2 cut(s)	91, 379
OliI	CACNNNNGTG	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	58
PciI	ACATGT	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	40, 256, 290, 293, 519, 529
PleI	GAGTC	2 cut(s)	308, 476
PpsI	GAGTC	2 cut(s)	308, 476
PscI	ACATGT	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	271, 597
PspPI	GGNCC	2 cut(s)	270, 404
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	3 cut(s)	441, 539, 810
SatI	GCNGC	6 cut(s)	39, 255, 289, 292, 518, 528
Sau3AI	GATC	6 cut(s)	104, 151, 343, 568, 626, 663
Sau96I	GGNCC	2 cut(s)	270, 404
SbfI	CCTGCAGG	1 cut(s)	643
SchI	GAGTC	2 cut(s)	308, 476
ScrFI	CCNGG	3 cut(s)	60, 274, 680
SdaI	CCTGCAGG	1 cut(s)	643
SduI	GDGCHC	2 cut(s)	52, 419
SfaNI	GCATC	4 cut(s)	373, 463, 514, 822
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse8387I	CCTGCAGG	1 cut(s)	643
Sse9I	AATT	5 cut(s)	318, 536, 548, 649, 667
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	4 cut(s)	36, 255, 291, 527
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	3 cut(s)	58, 272, 678
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	200, 421, 757
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	1 cut(s)	103
TasI	AATT	5 cut(s)	318, 536, 548, 649, 667
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	3 cut(s)	257, 294, 530
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	441, 539, 810
Tru9I	TTAA	3 cut(s)	441, 539, 810
TscAI	CASTG	2 cut(s)	369, 424
TseFI	GTSAC	3 cut(s)	311, 360, 733
TseI	GCWGC	3 cut(s)	38, 288, 517
Tsp45I	GTSAC	3 cut(s)	311, 360, 733
TspDTI	ATGAA	4 cut(s)	444, 561, 716, 782
TspRI	CASTG	2 cut(s)	369, 424
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	404
XceI	RCATGY	2 cut(s)	91, 379
XmnI	GAANNNNTTC	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.