Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011259.1

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

3067 .. 3315

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011259.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ctgaggtgtcggtgctcagttccggtgcggtccagggccttggagcgtctccgagctccccagcaaggcggccgccgctctgaaaacgccgacaaccggttccagatcaagatggagaagccgatctatgacacggtcgacgaggatgagtacgacgccatcatcgccaagcagagcgaggagttcaaggacttcatcgaggacgacgacggcctagggtaccgcgactactgcgaggaagaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

82

Amino Acids

9.69

Weight (kDa)

4.55

Isoelectric Point (pI)

82.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	225
AciI	CCGC	5 cut(s)	28, 69, 73, 76, 223
AcoI	YGGCCR	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	152, 221
AfiI	CCNNNNNNNGG	2 cut(s)	65, 96
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	2 cut(s)	17, 58
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	3 cut(s)	36, 70, 211
AsiGI	ACCGGT	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	219
AspA2I	CCTAGG	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	30, 36
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	17, 58
BccI	CCATC	2 cut(s)	106, 167
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	215, 247
BisI	GCNGC	3 cut(s)	70, 73, 76
BlnI	CCTAGG	1 cut(s)	214
BlsI	GCNGC	3 cut(s)	71, 74, 77
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	30, 36
BmiI	GGNNCC	2 cut(s)	101, 221
BmrFI	CCNGG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	33, 39, 214
BsaWI	WCCGGW	2 cut(s)	22, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 96
Bse118I	RCCGGY	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	3 cut(s)	33, 39, 214
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	65, 96
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	2 cut(s)	73, 138
BshFI	GGCC	3 cut(s)	38, 72, 213
BshNI	GGYRCC	1 cut(s)	219
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	2 cut(s)	73, 138
BsiHKAI	GWGCWC	2 cut(s)	17, 58
BsiSI	CCGG	2 cut(s)	23, 97
BslI	CCNNNNNNNGG	2 cut(s)	65, 96
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	38, 72, 213
Bsp1286I	GDGCHC	2 cut(s)	17, 58
Bsp143I	GATC	2 cut(s)	105, 123
BspACI	CCGC	5 cut(s)	28, 69, 73, 76, 223
BspANI	GGCC	3 cut(s)	38, 72, 213
BspCNI	CTCAG	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	101, 221
BspT107I	GGYRCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	33, 39, 214
BssMI	GATC	2 cut(s)	105, 123
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	39, 214
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	2, 16
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	108, 126
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	105, 123
BstMCI	CGRYCG	2 cut(s)	73, 138
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 164, 231
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	38, 72, 213
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	151
CciNI	GCGGCCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	30, 36
CseI	GACGC	2 cut(s)	35, 164
Csp6I	GTAC	2 cut(s)	151, 220
CspAI	ACCGGT	1 cut(s)	96
CviJI	RGCY	5 cut(s)	38, 56, 72, 121, 213
CviKI_1	RGCY	5 cut(s)	38, 56, 72, 121, 213
CviQI	GTAC	2 cut(s)	151, 220
DdeI	CTNAG	2 cut(s)	2, 16
DpnI	GATC	2 cut(s)	107, 125
DpnII	GATC	2 cut(s)	105, 123
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	56
EclXI	CGGCCG	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	39, 214
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	30
Eco52I	CGGCCG	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	39, 214
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	39, 214
Esp3I	CGTCTC	1 cut(s)	53
FaiI	YATR	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	70, 73, 76
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	70, 73, 76
FspBI	CTAG	2 cut(s)	215, 247
GluI	GCNGC	3 cut(s)	70, 73, 76
GsaI	CCCAGC	1 cut(s)	64
HaeIII	GGCC	3 cut(s)	38, 72, 213
HapII	CCGG	2 cut(s)	23, 97
HgaI	GACGC	2 cut(s)	35, 164
Hin1I	GRCGYC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	23, 97
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	53, 82
Hpy188III	TCNNGA	2 cut(s)	103, 109
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	4 cut(s)	143, 158, 209, 212
HpyCH4III	ACNGT	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 164, 231
HpyF3I	CTNAG	2 cut(s)	2, 16
Hsp92I	GRCGYC	1 cut(s)	156
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	105, 123
LmnI	GCTCC	2 cut(s)	43, 61
LpnPI	CCDG	6 cut(s)	19, 36, 46, 74, 110, 116
MaeI	CTAG	2 cut(s)	215, 247
MalI	GATC	2 cut(s)	107, 125
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	2 cut(s)	105, 123
MhlI	GDGCHC	2 cut(s)	17, 58
MnlI	CCTC	5 cut(s)	136, 172, 193, 229, 235
MspI	CCGG	2 cut(s)	23, 97
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	75, 164, 231
NdeII	GATC	2 cut(s)	105, 123
NlaIV	GGNNCC	2 cut(s)	101, 221
NotI	GCGGCCGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	71, 74, 77
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	101, 221
PspPI	GGNCC	2 cut(s)	30, 36
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	2 cut(s)	152, 221
RsaNI	GTAC	2 cut(s)	151, 220
SacI	GAGCTC	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	137
SatI	GCNGC	3 cut(s)	70, 73, 76
Sau3AI	GATC	2 cut(s)	105, 123
Sau96I	GGNCC	2 cut(s)	30, 36
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	2 cut(s)	17, 58
SetI	ASST	2 cut(s)	8, 58
SinI	GGWCC	1 cut(s)	30
SsiI	CCGC	5 cut(s)	28, 69, 73, 76, 223
SspMI	CTAG	2 cut(s)	215, 247
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	39, 214
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	138, 198
TauI	GCSGC	3 cut(s)	72, 75, 78
TspDTI	ATGAA	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	215, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.