DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_alpha_N | PF12254 | 2 - 46 | 5.1e-14 | DNA polymerase alpha subunit p180 N terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 161 |
| Acc65I | GGTACC | 1 cut(s) | 108 |
| AccB1I | GGYRCC | 1 cut(s) | 108 |
| AccI | GTMKAC | 1 cut(s) | 27 |
| AccII | CGCG | 5 cut(s) | 47, 66, 114, 147, 238 |
| AclWI | GGATC | 1 cut(s) | 468 |
| AcyI | GRCGYC | 1 cut(s) | 158 |
| AfaI | GTAC | 2 cut(s) | 41, 110 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| AjiI | CACGTC | 1 cut(s) | 315 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| Alw26I | GTCTC | 1 cut(s) | 403 |
| AlwI | GGATC | 1 cut(s) | 468 |
| AoxI | GGCC | 4 cut(s) | 100, 188, 239, 351 |
| ApeKI | GCWGC | 2 cut(s) | 378, 465 |
| Asp718I | GGTACC | 1 cut(s) | 108 |
| AspA2I | CCTAGG | 1 cut(s) | 103 |
| AspLEI | GCGC | 1 cut(s) | 63 |
| AspS9I | GGNCC | 3 cut(s) | 138, 189, 240 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| AvrII | CCTAGG | 1 cut(s) | 103 |
| BanI | GGYRCC | 1 cut(s) | 108 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| BbvI | GCAGC | 2 cut(s) | 365, 452 |
| BccI | CCATC | 1 cut(s) | 277 |
| BceAI | ACGGC | 5 cut(s) | 115, 136, 193, 282, 430 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BcoDI | GTCTC | 1 cut(s) | 403 |
| BfaI | CTAG | 1 cut(s) | 104 |
| BfoI | RGCGCY | 1 cut(s) | 64 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BlnI | CCTAGG | 1 cut(s) | 103 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmgBI | CACGTC | 1 cut(s) | 315 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 189, 240 |
| BmiI | GGNNCC | 3 cut(s) | 110, 140, 234 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BmsI | GCATC | 1 cut(s) | 426 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 158 |
| BsaI | GGTCTC | 1 cut(s) | 403 |
| BsaJI | CCNNGG | 4 cut(s) | 103, 145, 191, 236 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| Bse1I | ACTGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 4 cut(s) | 103, 145, 191, 236 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| BseNI | ACTGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 2 cut(s) | 83, 211 |
| BseXI | GCAGC | 2 cut(s) | 365, 452 |
| Bsh1236I | CGCG | 5 cut(s) | 47, 66, 114, 147, 238 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 4 cut(s) | 102, 190, 241, 353 |
| BshNI | GGYRCC | 1 cut(s) | 108 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 147, 198 |
| BsmAI | GTCTC | 1 cut(s) | 403 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsnI | GGCC | 4 cut(s) | 102, 190, 241, 353 |
| Bso31I | GGTCTC | 1 cut(s) | 403 |
| Bsp143I | GATC | 3 cut(s) | 12, 48, 460 |
| BspANI | GGCC | 4 cut(s) | 102, 190, 241, 353 |
| BspFNI | CGCG | 5 cut(s) | 47, 66, 114, 147, 238 |
| BspLI | GGNNCC | 3 cut(s) | 110, 140, 234 |
| BspPI | GGATC | 1 cut(s) | 468 |
| BspQI | GCTCTTC | 1 cut(s) | 433 |
| BspT107I | GGYRCC | 1 cut(s) | 108 |
| BspTNI | GGTCTC | 1 cut(s) | 403 |
| BsrI | ACTGG | 1 cut(s) | 140 |
| BssECI | CCNNGG | 4 cut(s) | 103, 145, 191, 236 |
| BssMI | GATC | 3 cut(s) | 12, 48, 460 |
| BssNI | GRCGYC | 1 cut(s) | 158 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 2 cut(s) | 123, 433 |
| BstACI | GRCGYC | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDSI | CCRYGG | 2 cut(s) | 145, 236 |
| BstFNI | CGCG | 5 cut(s) | 47, 66, 114, 147, 238 |
| BstH2I | RGCGCY | 1 cut(s) | 64 |
| BstHHI | GCGC | 1 cut(s) | 63 |
| BstKTI | GATC | 3 cut(s) | 15, 51, 463 |
| BstMAI | GTCTC | 1 cut(s) | 403 |
| BstMBI | GATC | 3 cut(s) | 12, 48, 460 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 120, 247, 275 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstUI | CGCG | 5 cut(s) | 47, 66, 114, 147, 238 |
| BstV1I | GCAGC | 2 cut(s) | 365, 452 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 4 cut(s) | 102, 190, 241, 353 |
| BtgI | CCRYGG | 2 cut(s) | 145, 236 |
| BtgZI | GCGATG | 2 cut(s) | 37, 293 |
| BtrI | CACGTC | 1 cut(s) | 315 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| CfoI | GCGC | 1 cut(s) | 63 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 189, 240 |
| Cfr42I | CCGCGG | 2 cut(s) | 148, 239 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 2 cut(s) | 40, 109 |
| CviQI | GTAC | 2 cut(s) | 40, 109 |
| DpnI | GATC | 3 cut(s) | 14, 50, 462 |
| DpnII | GATC | 3 cut(s) | 12, 48, 460 |
| Eam1104I | CTCTTC | 2 cut(s) | 123, 433 |
| EarI | CTCTTC | 2 cut(s) | 123, 433 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco31I | GGTCTC | 1 cut(s) | 403 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaiI | YATR | 2 cut(s) | 185, 457 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FauI | CCCGC | 2 cut(s) | 140, 149 |
| FblI | GTMKAC | 1 cut(s) | 27 |
| FspBI | CTAG | 1 cut(s) | 104 |
| GlaI | GCGC | 1 cut(s) | 62 |
| HaeII | RGCGCY | 1 cut(s) | 64 |
| HaeIII | GGCC | 4 cut(s) | 102, 190, 241, 353 |
| HgaI | GACGC | 1 cut(s) | 53 |
| HhaI | GCGC | 1 cut(s) | 63 |
| Hin1I | GRCGYC | 1 cut(s) | 158 |
| Hin6I | GCGC | 1 cut(s) | 61 |
| HinP1I | GCGC | 1 cut(s) | 61 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 1 cut(s) | 170 |
| Hpy166II | GTNNAC | 2 cut(s) | 28, 312 |
| Hpy188I | TCNGA | 4 cut(s) | 156, 166, 175, 422 |
| Hpy8I | GTNNAC | 2 cut(s) | 28, 312 |
| HpyAV | CCTTC | 5 cut(s) | 199, 211, 217, 223, 417 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 314 |
| HpyCH4V | TGCA | 1 cut(s) | 381 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 120, 247, 275 |
| HpySE526I | ACGT | 2 cut(s) | 158, 314 |
| Hsp92I | GRCGYC | 1 cut(s) | 158 |
| HspAI | GCGC | 1 cut(s) | 61 |
| KpnI | GGTACC | 1 cut(s) | 112 |
| KspI | CCGCGG | 2 cut(s) | 148, 239 |
| Kzo9I | GATC | 3 cut(s) | 12, 48, 460 |
| LguI | GCTCTTC | 1 cut(s) | 433 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 4 cut(s) | 121, 178, 205, 380 |
| Lsp1109I | GCAGC | 2 cut(s) | 365, 452 |
| LweI | GCATC | 1 cut(s) | 426 |
| MaeI | CTAG | 1 cut(s) | 104 |
| MaeII | ACGT | 2 cut(s) | 158, 314 |
| MaeIII | GTNAC | 1 cut(s) | 344 |
| MalI | GATC | 3 cut(s) | 14, 50, 462 |
| MboI | GATC | 3 cut(s) | 12, 48, 460 |
| MboII | GAAGA | 5 cut(s) | 140, 214, 226, 309, 450 |
| MluCI | AATT | 1 cut(s) | 253 |
| MmeI | TCCRAC | 1 cut(s) | 179 |
| MseI | TTAA | 2 cut(s) | 327, 452 |
| MspA1I | CMGCKG | 3 cut(s) | 147, 238, 378 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MvnI | CGCG | 5 cut(s) | 47, 66, 114, 147, 238 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 120, 247, 275 |
| NdeII | GATC | 3 cut(s) | 12, 48, 460 |
| NlaIV | GGNNCC | 3 cut(s) | 110, 140, 234 |
| NmuCI | GTSAC | 1 cut(s) | 344 |
| PciSI | GCTCTTC | 1 cut(s) | 433 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 24, 33, 93, 311 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PflFI | GACNNNGTC | 2 cut(s) | 23, 160 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 3 cut(s) | 110, 140, 234 |
| PspPI | GGNCC | 3 cut(s) | 138, 189, 240 |
| PsyI | GACNNNGTC | 2 cut(s) | 23, 160 |
| RsaI | GTAC | 2 cut(s) | 41, 110 |
| RsaNI | GTAC | 2 cut(s) | 40, 109 |
| SacII | CCGCGG | 2 cut(s) | 148, 239 |
| SalI | GTCGAC | 1 cut(s) | 26 |
| SapI | GCTCTTC | 1 cut(s) | 433 |
| SaqAI | TTAA | 2 cut(s) | 327, 452 |
| Sau3AI | GATC | 3 cut(s) | 12, 48, 460 |
| Sau96I | GGNCC | 3 cut(s) | 138, 189, 240 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SetI | ASST | 3 cut(s) | 161, 210, 317 |
| SfaNI | GCATC | 1 cut(s) | 426 |
| Sfr303I | CCGCGG | 2 cut(s) | 148, 239 |
| SgrBI | CCGCGG | 2 cut(s) | 148, 239 |
| SinI | GGWCC | 1 cut(s) | 138 |
| Sse9I | AATT | 1 cut(s) | 253 |
| SspMI | CTAG | 1 cut(s) | 104 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaiI | ACGT | 2 cut(s) | 161, 317 |
| TaqI | TCGA | 4 cut(s) | 11, 27, 87, 305 |
| TasI | AATT | 1 cut(s) | 253 |
| TauI | GCSGC | 8 cut(s) | 66, 147, 238, 241, 272, 275, 278, 378 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| Tru1I | TTAA | 2 cut(s) | 327, 452 |
| Tru9I | TTAA | 2 cut(s) | 327, 452 |
| TseFI | GTSAC | 1 cut(s) | 344 |
| TseI | GCWGC | 2 cut(s) | 378, 465 |
| Tsp45I | GTSAC | 1 cut(s) | 344 |
| TspDTI | ATGAA | 2 cut(s) | 73, 183 |
| Tth111I | GACNNNGTC | 2 cut(s) | 23, 160 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XmaJI | CCTAGG | 1 cut(s) | 103 |
| XmiI | GTMKAC | 1 cut(s) | 27 |
| XspI | CTAG | 1 cut(s) | 104 |
| ZraI | GACGTC | 1 cut(s) | 159 |