RLG00000001621

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000310
Physical Location & Seq
Forward (+)
18363097 .. 18364968
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001621

Sequence Viewer

Length: 951 bp
ATGGAGAAGCCGATCTACGACACAGTTGACGAGGACGAGTACGACGCCATCATCGCCAAGCAATGCGAGGAGTTCTGGGACTTCATCGAGGATGACGACGGCCTAGGGTACCGCGACGACTGTGAGGAAGAGGACTGGACCCACCGCGGGCTTCGGACGTCGTCGGATGAATCGGACGGCGATATGAGGCCCAAGAGGAGGAAGACGGTGGAGAAGAAGGAGAAGGAGAAGGAGCCGCAGCCCAAAAAGCCCAATTCGTCTCTTACGGAGGCGGCGGTGATGATGGGGAATATTATGGATGATGTGATTGCTGAGTTTGCACAGGACGAGGCTGATAGAGAGAGACGGAGGAGGGCACAGCCGGCGAGGAGTTTCGTTCCGATTACCGGAGTTAAGAGTGAGAGAATGAGAGAGGCGGGACTTTCGGAAAAGTATGAGGTCGGTTACAACGCTTGGTTTGATAAGGATCGACTGTGGTTCTCCATATTGCCTCAGAGACTTCTGGAGAAGTTCCTCGACAAAGCCTTGCTTGCACTAGATGATTTGAAGAAAAATGGGAAGTGCGCTACTTTCTTCACCAAGCAAGGTGCCACCATAGACAGAACTATTTTCCCCGGTTTTGACATACCAGCTGCTTCACTTCAGTCATTTATCAGCCTTGCCATAATGATATTCATACCCATTTATGACTGCATTTTTGTTCCAATAGCAAGAGCTTTCACCGGAGAACCCTCTGGCATTACAATGCTACAAAGAGTCGGTACTGGGATGTTTTTCTCTATCATTTCTATCGTCGTTGCAGCTTTAGTTGAGATAAAAAGGCTCCACACTGTGAAAGACTATGATCTGGTTGATCTGCCAAGTGCCACAATTCCAATGAGTATTTGGTGGTTAATTCCTCAGTACTTTTTGTATGGACTAGCTGATGTTTTCACCATGGTTGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

317

Amino Acids

36.21

Weight (kDa)

4.81

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_alpha_N PF12254 2 - 46 2e-11 DNA polymerase alpha subunit p180 N terminal
PTR2 PF00854 189 - 314 2.6e-28 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 2 cut(s) 108, 587
AccII CGCG 2 cut(s) 114, 147
AciI CCGC 7 cut(s) 112, 145, 147, 236, 272, 275, 416
AclWI GGATC 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 2 cut(s) 45, 158
AdeI CACNNNGTG 1 cut(s) 832
AfaI GTAC 4 cut(s) 41, 110, 763, 905
AfiI CCNNNNNNNGG 3 cut(s) 147, 198, 386
AgsI TTSAA 1 cut(s) 547
AluBI AGCT 4 cut(s) 632, 716, 803, 923
AluI AGCT 4 cut(s) 632, 716, 803, 923
Alw26I GTCTC 3 cut(s) 264, 337, 490
AlwI GGATC 1 cut(s) 474
AoxI GGCC 2 cut(s) 100, 188
ApeKI GCWGC 3 cut(s) 238, 632, 800
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
Asp718I GGTACC 1 cut(s) 108
AspA2I CCTAGG 1 cut(s) 103
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 2 cut(s) 138, 189
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 4 cut(s) 289, 568, 712, 925
AvaII GGWCC 1 cut(s) 138
AvrII CCTAGG 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 2 cut(s) 108, 587
BarI GAAGNNNNNNTAC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 250, 619, 812
BccI CCATC 2 cut(s) 56, 277
BceAI ACGGC 2 cut(s) 115, 193
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 264, 337, 490
BfaI CTAG 3 cut(s) 104, 536, 920
BisI GCNGC 5 cut(s) 236, 239, 273, 633, 801
BlnI CCTAGG 1 cut(s) 103
BlsI GCNGC 5 cut(s) 237, 240, 274, 634, 802
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 138, 189
BmiI GGNNCC 5 cut(s) 110, 140, 234, 589, 824
BmrFI CCNGG 1 cut(s) 615
BmrI ACTGGG 1 cut(s) 774
BmuI ACTGGG 1 cut(s) 774
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 615
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 2 cut(s) 45, 158
BsaJI CCNNGG 4 cut(s) 103, 145, 613, 936
BsaWI WCCGGW 2 cut(s) 386, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 198, 386
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 140, 769
Bse3DI GCAATG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 465
BseDI CCNNGG 4 cut(s) 103, 145, 613, 936
BseGI GGATG 4 cut(s) 97, 172, 304, 774
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 147, 198, 386
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 303, 506, 914
BseNI ACTGG 2 cut(s) 140, 769
BseRI GAGGAG 4 cut(s) 83, 211, 364, 382
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 3 cut(s) 250, 619, 812
Bsh1236I CGCG 2 cut(s) 114, 147
BshFI GGCC 2 cut(s) 102, 190
BshNI GGYRCC 2 cut(s) 108, 587
BsiSI CCGG 4 cut(s) 362, 387, 615, 723
BslFI GGGAC 2 cut(s) 92, 432
BslI CCNNNNNNNGG 3 cut(s) 147, 198, 386
BsmAI GTCTC 3 cut(s) 264, 337, 490
BsmBI CGTCTC 2 cut(s) 264, 337
BsmFI GGGAC 2 cut(s) 92, 432
BsnI GGCC 2 cut(s) 102, 190
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 4 cut(s) 12, 466, 844, 853
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 7 cut(s) 112, 145, 147, 236, 272, 275, 416
BspANI GGCC 2 cut(s) 102, 190
BspCNI CTCAG 3 cut(s) 304, 505, 913
BspFNI CGCG 2 cut(s) 114, 147
BspLI GGNNCC 5 cut(s) 110, 140, 234, 589, 824
BspPI GGATC 1 cut(s) 474
BspT107I GGYRCC 2 cut(s) 108, 587
BsrDI GCAATG 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 2 cut(s) 140, 769
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 4 cut(s) 103, 145, 613, 936
BssMI GATC 4 cut(s) 12, 466, 844, 853
BssNI GRCGYC 2 cut(s) 45, 158
BssT1I CCWWGG 2 cut(s) 103, 936
Bst4CI ACNGT 5 cut(s) 25, 122, 208, 474, 832
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 45, 158
BstC8I GCNNGC 3 cut(s) 149, 363, 531
BstDEI CTNAG 3 cut(s) 312, 492, 900
BstDSI CCRYGG 2 cut(s) 145, 936
BstF5I GGATG 4 cut(s) 97, 172, 304, 774
BstFNI CGCG 2 cut(s) 114, 147
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 4 cut(s) 15, 469, 847, 856
BstMAI GTCTC 3 cut(s) 264, 337, 490
BstMBI GATC 4 cut(s) 12, 466, 844, 853
BstMWI GCNNNNNNNGC 5 cut(s) 53, 247, 317, 362, 530
BstSCI CCNGG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 2 cut(s) 114, 147
BstV1I GCAGC 3 cut(s) 250, 619, 812
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 102, 190
BtgI CCRYGG 2 cut(s) 145, 936
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 4 cut(s) 97, 172, 304, 774
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 3 cut(s) 149, 363, 531
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 138, 189
Cfr42I CCGCGG 1 cut(s) 148
CseI GACGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 40, 109, 762, 904
CviAII CATG 1 cut(s) 937
CviQI GTAC 4 cut(s) 40, 109, 762, 904
DdeI CTNAG 3 cut(s) 312, 492, 900
DpnI GATC 4 cut(s) 14, 468, 846, 855
DpnII GATC 4 cut(s) 12, 466, 844, 853
DraIII CACNNNGTG 1 cut(s) 832
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 103, 936
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 626
EcoT14I CCWWGG 2 cut(s) 103, 936
ErhI CCWWGG 2 cut(s) 103, 936
Esp3I CGTCTC 2 cut(s) 264, 337
FaeI CATG 1 cut(s) 940
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 2 cut(s) 92, 432
FatI CATG 1 cut(s) 936
FauI CCCGC 2 cut(s) 140, 409
Fnu4HI GCNGC 5 cut(s) 236, 239, 273, 633, 801
FokI GGATG 4 cut(s) 104, 179, 311, 781
Fsp4HI GCNGC 5 cut(s) 236, 239, 273, 633, 801
FspBI CTAG 3 cut(s) 104, 536, 920
GlaI GCGC 1 cut(s) 565
GluI GCNGC 5 cut(s) 236, 239, 273, 633, 801
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 2 cut(s) 102, 190
HapII CCGG 4 cut(s) 362, 387, 615, 723
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 566
Hin1I GRCGYC 2 cut(s) 45, 158
Hin1II CATG 1 cut(s) 940
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 170, 756
HpaII CCGG 4 cut(s) 362, 387, 615, 723
HphI GGTGA 4 cut(s) 289, 568, 712, 925
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 6 cut(s) 156, 166, 175, 381, 427, 495
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 6 cut(s) 47, 101, 119, 163, 166, 797
HpyAV CCTTC 3 cut(s) 211, 217, 223
HpyCH4III ACNGT 5 cut(s) 25, 122, 208, 474, 832
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 320, 533, 693, 800
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 247, 317, 362, 530
HpyF3I CTNAG 3 cut(s) 312, 492, 900
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 2 cut(s) 45, 158
Hsp92II CATG 1 cut(s) 940
HspAI GCGC 1 cut(s) 564
KpnI GGTACC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 4 cut(s) 12, 466, 844, 853
LmnI GCTCC 2 cut(s) 232, 828
Lsp1109I GCAGC 3 cut(s) 250, 619, 812
MaeI CTAG 3 cut(s) 104, 536, 920
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 443
MalI GATC 4 cut(s) 14, 468, 846, 855
MboI GATC 4 cut(s) 12, 466, 844, 853
MboII GAAGA 5 cut(s) 140, 214, 226, 559, 565
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 3 cut(s) 253, 870, 894
MlyI GAGTC 1 cut(s) 765
MmeI TCCRAC 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 2 cut(s) 393, 893
MslI CAYNNNNRTG 1 cut(s) 743
MspA1I CMGCKG 2 cut(s) 147, 632
MspI CCGG 4 cut(s) 362, 387, 615, 723
MspR9I CCNGG 1 cut(s) 615
MvnI CGCG 2 cut(s) 114, 147
MwoI GCNNNNNNNGC 5 cut(s) 53, 247, 317, 362, 530
NaeI GCCGGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 936
NdeII GATC 4 cut(s) 12, 466, 844, 853
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 1 cut(s) 940
NlaIV GGNNCC 5 cut(s) 110, 140, 234, 589, 824
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 160
PkrI GCNGC 5 cut(s) 237, 240, 274, 634, 802
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
PspN4I GGNNCC 5 cut(s) 110, 140, 234, 589, 824
PspPI GGNCC 2 cut(s) 138, 189
PsyI GACNNNGTC 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 4 cut(s) 41, 110, 763, 905
RsaNI GTAC 4 cut(s) 40, 109, 762, 904
RseI CAYNNNNRTG 1 cut(s) 743
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 2 cut(s) 393, 893
SatI GCNGC 5 cut(s) 236, 239, 273, 633, 801
Sau3AI GATC 4 cut(s) 12, 466, 844, 853
Sau96I GGNCC 2 cut(s) 138, 189
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 1 cut(s) 765
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 1 cut(s) 358
SetI ASST 7 cut(s) 161, 441, 589, 634, 718, 805, 925
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 743
Sse9I AATT 3 cut(s) 253, 870, 894
SsiI CCGC 7 cut(s) 112, 145, 147, 236, 272, 275, 416
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 104, 536, 920
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 2 cut(s) 103, 936
TaaI ACNGT 5 cut(s) 25, 122, 208, 474, 832
TaiI ACGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 87, 469, 516
TasI AATT 3 cut(s) 253, 870, 894
TatI WGTACW 1 cut(s) 903
TauI GCSGC 2 cut(s) 238, 275
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 393, 893
Tru9I TTAA 2 cut(s) 393, 893
TscAI CASTG 1 cut(s) 835
TseI GCWGC 3 cut(s) 238, 632, 800
TspDTI ATGAA 3 cut(s) 73, 183, 664
TspGWI ACGGA 2 cut(s) 281, 361
TspRI CASTG 1 cut(s) 835
Tth111I GACNNNGTC 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 882
XmaJI CCTAGG 1 cut(s) 103
XspI CTAG 3 cut(s) 104, 536, 920
ZraI GACGTC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.