Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003030.1

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

9801 .. 13936

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003030.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

atggcaggagattttaatgaagtcttgtggcgtaaagataaatctagaggaccccctagagcattagtggcaatgaccaagttcagatgtacaatggcttcatgtggactcatcgatatgggatatgtgggaagtatgttcacatggtcaaactgttttccaaaggaacgactagaacgaggatttcagaatattcaatggcgtgataggtttccatacagcagggtaatcactctcaatccctcggagtcagatcactaccctattctcattgaagcatttagtgagaaacaaattcgaaggaaaacaagcagacctttttgttttgaggaatgctggtttggaagggaagaatgtcgaaagatcattcagcaggaatggcccatgccaagcaggggtaatgcattgcaacacattgaagttgttactgcaactccttgccgtgtgacacaagacatgaatgaagcattattggcctcgtatactaatgaggaaataacgaaggccctcttccaaatgcatccatcgaaaagtcctggccctgatggtatgtcccccttcttctaccaagaatattgggatattgtcagtgaagatagaggcgccggaaccgaggtgtcggtgctgtccagcgccttggagcgcctccgagctctccagcaaggcggccgccgctctgaaaacgccgacgaccggttccagatcaaaatggagaagcagatctacgacactgttgacgaggacgagtacgacgccatcatcgccaagcagagcgaggagttcggggacttcatcgaggacgacgacggcctagggtaccgtgacgacgacgaggaagaggactggacccgccacgggcttccgacgtcgtcggatgaatcggatggcgatatgaggcccaggaggaggaagacggtggagaataaggagaaggagaaggagccgcggcccaaaaaacccaattcgtcacttacggtggcggcgatgatggggaagcagaggctttcatcgatgttcacgtcgccggtgtttaataaaaatagggatggtgacaaggccaaaggattgtcttgtgatagcattgtggatgatgtgattaccgagtttgtgccggacgaggctgatagagagagacggatgagggcacagccggcgaggagtttcgttccgattatcggagttaagagtgagagagtgagagaggcggtgcatgtcgatggtgaggcttgggcttgggtcgatttgggtgctggatcgattggaggtggcggcgtgatgaaatggtggccggagatggttctccggtggttgcagagggaagaagaagatgagaggtcgagggagggagggagggagggagagagagagagagagagagagagcctacggcgctaccccattcctgatctgtggagaagcccacctatatcggatgcgacgactaccaaggatcgaaactgccaaaggttgagcatggctgcaccctccagattggatcggcccacgccacgaaaacctttccacctgcagagagacctcgatacaatgaagcaaaacggctactcactctttccacgtccactaccgactatcctcgccctccggctacgcagtcactggggtttggagaaactgatatttgctagaggattgagttgccctgctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

556

Amino Acids

64.2

Weight (kDa)

5.81

Isoelectric Point (pI)

64.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1533
AatII	GACGTC	1 cut(s)	869
Acc36I	ACCTGC	1 cut(s)	1533
Acc65I	GGTACC	1 cut(s)	816
AccB1I	GGYRCC	2 cut(s)	602, 816
AccBSI	CCGCTC	1 cut(s)	675
AccI	GTMKAC	1 cut(s)	482
AccII	CGCG	1 cut(s)	946
AciI	CCGC	9 cut(s)	666, 670, 673, 850, 944, 946, 980, 1205, 1269
AclWI	GGATC	3 cut(s)	1261, 1458, 1503
AcoI	YGGCCR	2 cut(s)	667, 1286
AcsI	RAATTY	1 cut(s)	294
AcyI	GRCGYC	3 cut(s)	603, 753, 866
AfaI	GTAC	3 cut(s)	91, 749, 818
AfiI	CCNNNNNNNGG	5 cut(s)	395, 693, 855, 906, 1175
AgeI	ACCGGT	1 cut(s)	693
AgsI	TTSAA	3 cut(s)	197, 275, 419
AjiI	CACGTC	2 cut(s)	1020, 1577
AjnI	CCWGG	2 cut(s)	535, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	1 cut(s)	653
AluI	AGCT	1 cut(s)	653
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	1126, 1527
AlwI	GGATC	3 cut(s)	1261, 1458, 1503
AlwNI	CAGNNNCTG	1 cut(s)	1617
ApeKI	GCWGC	1 cut(s)	1478
ApoI	RAATTY	1 cut(s)	294
AsiGI	ACCGGT	1 cut(s)	693
Asp718I	GGTACC	1 cut(s)	816
AspA2I	CCTAGG	1 cut(s)	811
AspLEI	GCGC	4 cut(s)	605, 635, 645, 1392
AspS9I	GGNCC	8 cut(s)	50, 381, 505, 539, 846, 897, 948, 1500
AsuHPI	GGTGA	2 cut(s)	1061, 1232
AsuII	TTCGAA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	50, 846
AvrII	CCTAGG	1 cut(s)	811
BaeGI	GKGCMC	1 cut(s)	1147
BanI	GGYRCC	2 cut(s)	602, 816
BanII	GRGCYC	1 cut(s)	655
BarI	GAAGNNNNNNTAC	4 cut(s)	82, 114, 707, 739
BbsI	GAAGAC	1 cut(s)	917
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	1465
BccI	CCATC	8 cut(s)	532, 539, 764, 878, 982, 1040, 1211, 1288
BceAI	ACGGC	4 cut(s)	426, 823, 1403, 1573
BcgI	CGANNNNNNTGC	2 cut(s)	1229, 1263
BciT130I	CCWGG	2 cut(s)	537, 901
BcoDI	GTCTC	2 cut(s)	1126, 1527
BfaI	CTAG	5 cut(s)	45, 57, 173, 812, 1644
BfmI	CTRYAG	1 cut(s)	1526
BfoI	RGCGCY	4 cut(s)	606, 636, 646, 1393
BfuAI	ACCTGC	1 cut(s)	1533
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	8 cut(s)	667, 670, 673, 944, 947, 981, 1270, 1479
BlnI	CCTAGG	1 cut(s)	811
BlsI	GCNGC	8 cut(s)	668, 671, 674, 945, 948, 982, 1271, 1480
Bme1390I	CCNGG	2 cut(s)	537, 901
Bme18I	GGWCC	2 cut(s)	50, 846
BmgBI	CACGTC	2 cut(s)	1020, 1577
BmgT120I	GGNCC	8 cut(s)	50, 381, 505, 539, 846, 897, 948, 1500
BmiI	GGNNCC	7 cut(s)	52, 604, 610, 698, 818, 848, 942
BmrFI	CCNGG	2 cut(s)	537, 901
BmrI	ACTGGG	1 cut(s)	1627
BmsI	GCATC	2 cut(s)	529, 1423
BmuI	ACTGGG	1 cut(s)	1627
BpiI	GAAGAC	1 cut(s)	917
BpmI	CTGGAG	2 cut(s)	641, 1471
Bpu14I	TTCGAA	1 cut(s)	298
Bsa29I	ATCGAT	3 cut(s)	114, 1010, 1256
BsaHI	GRCGYC	3 cut(s)	603, 753, 866
BsaI	GGTCTC	1 cut(s)	1527
BsaJI	CCNNGG	8 cut(s)	243, 612, 636, 811, 853, 899, 944, 1446
BsaWI	WCCGGW	2 cut(s)	693, 1302
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	5 cut(s)	395, 693, 855, 906, 1175
Bse118I	RCCGGY	3 cut(s)	693, 1024, 1150
Bse1I	ACTGG	2 cut(s)	848, 1622
Bse3DI	GCAATG	2 cut(s)	78, 404
BseBI	CCWGG	2 cut(s)	537, 901
BseCI	ATCGAT	3 cut(s)	114, 1010, 1256
BseDI	CCNNGG	8 cut(s)	243, 612, 636, 811, 853, 899, 944, 1446
BseGI	GGATG	7 cut(s)	520, 880, 889, 1051, 1093, 1143, 1438
BseLI	CCNNNNNNNGG	5 cut(s)	395, 693, 855, 906, 1175
BseMI	GCAATG	2 cut(s)	78, 404
BseNI	ACTGG	2 cut(s)	848, 1622
BseRI	GAGGAG	3 cut(s)	791, 919, 1171
BseSI	GKGCMC	1 cut(s)	1147
BseX3I	CGGCCG	1 cut(s)	667
BseXI	GCAGC	1 cut(s)	1465
BsgI	GTGCAG	1 cut(s)	1464
Bsh1236I	CGCG	1 cut(s)	946
Bsh1285I	CGRYCG	2 cut(s)	670, 694
BshNI	GGYRCC	2 cut(s)	602, 816
BshTI	ACCGGT	1 cut(s)	693
BshVI	ATCGAT	3 cut(s)	114, 1010, 1256
BsiEI	CGRYCG	2 cut(s)	670, 694
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	8 cut(s)	606, 694, 1025, 1112, 1151, 1289, 1303, 1603
BslFI	GGGAC	2 cut(s)	538, 800
BslI	CCNNNNNNNGG	5 cut(s)	395, 693, 855, 906, 1175
BsmAI	GTCTC	2 cut(s)	1126, 1527
BsmBI	CGTCTC	1 cut(s)	1126
BsmFI	GGGAC	2 cut(s)	538, 800
BsmI	GAATGC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	1527
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	655, 1147
Bsp1407I	TGTACA	1 cut(s)	89
Bsp143I	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
BspACI	CCGC	9 cut(s)	666, 670, 673, 850, 944, 946, 980, 1205, 1269
BspDI	ATCGAT	3 cut(s)	114, 1010, 1256
BspFNI	CGCG	1 cut(s)	946
BspLI	GGNNCC	7 cut(s)	52, 604, 610, 698, 818, 848, 942
BspMAI	CTGCAG	1 cut(s)	1530
BspMI	ACCTGC	1 cut(s)	1533
BspPI	GGATC	3 cut(s)	1261, 1458, 1503
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	2 cut(s)	602, 816
BspTNI	GGTCTC	1 cut(s)	1527
BsrBI	CCGCTC	1 cut(s)	675
BsrDI	GCAATG	2 cut(s)	78, 404
BsrFI	RCCGGY	3 cut(s)	693, 1024, 1150
BsrGI	TGTACA	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	848, 1622
BssAI	RCCGGY	3 cut(s)	693, 1024, 1150
BssECI	CCNNGG	8 cut(s)	243, 612, 636, 811, 853, 899, 944, 1446
BssMI	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
BssNAI	GTATAC	1 cut(s)	483
BssNI	GRCGYC	3 cut(s)	603, 753, 866
BssT1I	CCWWGG	3 cut(s)	636, 811, 1446
Bst1107I	GTATAC	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	537, 901
Bst4CI	ACNGT	5 cut(s)	155, 733, 821, 916, 976
Bst6I	CTCTTC	2 cut(s)	515, 831
BstACI	GRCGYC	3 cut(s)	603, 753, 866
BstAUI	TGTACA	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	1152
BstDSI	CCRYGG	2 cut(s)	853, 944
BstF5I	GGATG	7 cut(s)	520, 880, 889, 1051, 1093, 1143, 1438
BstFNI	CGCG	1 cut(s)	946
BstH2I	RGCGCY	4 cut(s)	606, 636, 646, 1393
BstHHI	GCGC	4 cut(s)	605, 635, 645, 1392
BstKTI	GATC	8 cut(s)	256, 366, 705, 723, 1256, 1408, 1453, 1498
BstMAI	GTCTC	2 cut(s)	1126, 1527
BstMBI	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
BstMCI	CGRYCG	2 cut(s)	670, 694
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 379, 473, 672, 761, 1151, 1389
BstNI	CCWGG	2 cut(s)	537, 901
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	2 cut(s)	535, 899
BstSFI	CTRYAG	1 cut(s)	1526
BstSLI	GKGCMC	1 cut(s)	1147
BstUI	CGCG	1 cut(s)	946
BstV1I	GCAGC	1 cut(s)	1465
BstV2I	GAAGAC	1 cut(s)	917
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	720
BstZ17I	GTATAC	1 cut(s)	483
BstZI	CGGCCG	1 cut(s)	667
Bsu15I	ATCGAT	3 cut(s)	114, 1010, 1256
BsuTUI	ATCGAT	3 cut(s)	114, 1010, 1256
BtgI	CCRYGG	2 cut(s)	853, 944
BtgZI	GCGATG	2 cut(s)	745, 998
BtrI	CACGTC	2 cut(s)	1020, 1577
BtsCI	GGATG	7 cut(s)	520, 880, 889, 1051, 1093, 1143, 1438
BtsIMutI	CAGTG	3 cut(s)	595, 729, 1615
BveI	ACCTGC	1 cut(s)	1533
Cac8I	GCNNGC	1 cut(s)	1152
CaiI	CAGNNNCTG	1 cut(s)	1617
CciNI	GCGGCCGC	1 cut(s)	667
CfoI	GCGC	4 cut(s)	605, 635, 645, 1392
Cfr10I	RCCGGY	3 cut(s)	693, 1024, 1150
Cfr13I	GGNCC	8 cut(s)	50, 381, 505, 539, 846, 897, 948, 1500
Cfr42I	CCGCGG	1 cut(s)	947
ClaI	ATCGAT	3 cut(s)	114, 1010, 1256
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	3 cut(s)	90, 748, 817
CspAI	ACCGGT	1 cut(s)	693
CviAII	CATG	6 cut(s)	102, 144, 385, 457, 1211, 1474
CviQI	GTAC	3 cut(s)	90, 748, 817
DinI	GGCGCC	1 cut(s)	604
DpnI	GATC	8 cut(s)	255, 365, 704, 722, 1255, 1407, 1452, 1497
DpnII	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
EaeI	YGGCCR	2 cut(s)	667, 1286
EagI	CGGCCG	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	515, 831
EarI	CTCTTC	2 cut(s)	515, 831
Ecl136II	GAGCTC	1 cut(s)	653
EclXI	CGGCCG	1 cut(s)	667
Eco130I	CCWWGG	3 cut(s)	636, 811, 1446
Eco24I	GRGCYC	1 cut(s)	655
Eco31I	GGTCTC	1 cut(s)	1527
Eco47I	GGWCC	2 cut(s)	50, 846
Eco52I	CGGCCG	1 cut(s)	667
Eco53kI	GAGCTC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	653
EcoO109I	RGGNCCY	2 cut(s)	50, 505
EcoRII	CCWGG	2 cut(s)	535, 899
EcoT14I	CCWWGG	3 cut(s)	636, 811, 1446
EcoT22I	ATGCAT	2 cut(s)	406, 522
EcoT38I	GRGCYC	1 cut(s)	655
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	3 cut(s)	636, 811, 1446
Esp3I	CGTCTC	1 cut(s)	1126
FaeI	CATG	6 cut(s)	105, 147, 388, 460, 1214, 1477
FalI	AAGNNNNNCTT	4 cut(s)	301, 333, 494, 526
FaqI	GGGAC	2 cut(s)	538, 800
FatI	CATG	6 cut(s)	101, 143, 384, 456, 1210, 1473
FauI	CCCGC	1 cut(s)	857
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	8 cut(s)	667, 670, 673, 944, 947, 981, 1270, 1479
FokI	GGATG	7 cut(s)	507, 887, 896, 1058, 1100, 1150, 1445
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	8 cut(s)	667, 670, 673, 944, 947, 981, 1270, 1479
FspBI	CTAG	5 cut(s)	45, 57, 173, 812, 1644
GlaI	GCGC	4 cut(s)	604, 634, 644, 1391
GluI	GCNGC	8 cut(s)	667, 670, 673, 944, 947, 981, 1270, 1479
GsuI	CTGGAG	2 cut(s)	641, 1471
HaeII	RGCGCY	4 cut(s)	606, 636, 646, 1393
HapII	CCGG	8 cut(s)	606, 694, 1025, 1112, 1151, 1289, 1303, 1603
HgaI	GACGC	1 cut(s)	761
HhaI	GCGC	4 cut(s)	605, 635, 645, 1392
Hin1I	GRCGYC	3 cut(s)	603, 753, 866
Hin1II	CATG	6 cut(s)	105, 147, 388, 460, 1214, 1477
Hin6I	GCGC	4 cut(s)	603, 633, 643, 1390
HinP1I	GCGC	4 cut(s)	603, 633, 643, 1390
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	3 cut(s)	108, 248, 878
HpaII	CCGG	8 cut(s)	606, 694, 1025, 1112, 1151, 1289, 1303, 1603
HphI	GGTGA	2 cut(s)	1061, 1232
Hpy166II	GTNNAC	6 cut(s)	107, 141, 483, 736, 1017, 1580
Hpy188III	TCNNGA	4 cut(s)	45, 700, 1403, 1488
Hpy8I	GTNNAC	6 cut(s)	107, 141, 483, 736, 1017, 1580
HpyAV	CCTTC	6 cut(s)	294, 339, 496, 568, 925, 931
HpyCH4III	ACNGT	5 cut(s)	155, 733, 821, 916, 976
HpyCH4IV	ACGT	3 cut(s)	866, 1019, 1576
HpyCH4V	TGCA	8 cut(s)	404, 409, 431, 520, 1210, 1312, 1481, 1528
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 379, 473, 672, 761, 1151, 1389
HpySE526I	ACGT	3 cut(s)	866, 1019, 1576
Hsp92I	GRCGYC	3 cut(s)	603, 753, 866
Hsp92II	CATG	6 cut(s)	105, 147, 388, 460, 1214, 1477
HspAI	GCGC	4 cut(s)	603, 633, 643, 1390
KasI	GGCGCC	1 cut(s)	602
KpnI	GGTACC	1 cut(s)	820
KroI	GCCGGC	1 cut(s)	1150
KroNI	GCCGGC	1 cut(s)	1152
KspI	CCGCGG	1 cut(s)	947
Kzo9I	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
LmnI	GCTCC	2 cut(s)	640, 940
Lsp1109I	GCAGC	1 cut(s)	1465
LweI	GCATC	2 cut(s)	529, 1423
MaeI	CTAG	5 cut(s)	45, 57, 173, 812, 1644
MaeII	ACGT	3 cut(s)	866, 1019, 1576
MaeIII	GTNAC	6 cut(s)	424, 445, 821, 966, 1049, 1613
MalI	GATC	8 cut(s)	255, 365, 704, 722, 1255, 1407, 1452, 1497
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
MboII	GAAGA	9 cut(s)	362, 502, 553, 605, 848, 922, 1331, 1334, 1337
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	655, 1147
MluCI	AATT	2 cut(s)	294, 961
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	102, 257
MmeI	TCCRAC	2 cut(s)	852, 887
Mph1103I	ATGCAT	2 cut(s)	406, 522
MroNI	GCCGGC	1 cut(s)	1150
MseI	TTAA	3 cut(s)	15, 1032, 1182
MslI	CAYNNNNRTG	2 cut(s)	116, 1215
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	8 cut(s)	606, 694, 1025, 1112, 1151, 1289, 1303, 1603
MspR9I	CCNGG	2 cut(s)	537, 901
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	537, 901
MvnI	CGCG	1 cut(s)	946
MwoI	GCNNNNNNNGC	7 cut(s)	68, 379, 473, 672, 761, 1151, 1389
NaeI	GCCGGC	1 cut(s)	1152
NarI	GGCGCC	1 cut(s)	603
NdeII	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
NgoMIV	GCCGGC	1 cut(s)	1150
NlaIII	CATG	6 cut(s)	105, 147, 388, 460, 1214, 1477
NlaIV	GGNNCC	7 cut(s)	52, 604, 610, 698, 818, 848, 942
NmuCI	GTSAC	5 cut(s)	445, 821, 966, 1049, 1613
NotI	GCGGCCGC	1 cut(s)	667
NsiI	ATGCAT	2 cut(s)	406, 522
NspI	RCATGY	1 cut(s)	1214
NspV	TTCGAA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	1533
PcsI	WCGNNNNNNNCGW	5 cut(s)	175, 801, 980, 1016, 1436
PctI	GAATGC	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	1152
PfeI	GAWTC	1 cut(s)	878
PflFI	GACNNNGTC	1 cut(s)	868
PinAI	ACCGGT	1 cut(s)	693
PkrI	GCNGC	8 cut(s)	668, 671, 674, 945, 948, 982, 1271, 1480
PleI	GAGTC	2 cut(s)	102, 256
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	2 cut(s)	102, 256
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	655
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	535, 899
PspGI	CCWGG	2 cut(s)	535, 899
PspN4I	GGNNCC	7 cut(s)	52, 604, 610, 698, 818, 848, 942
PspPI	GGNCC	8 cut(s)	50, 381, 505, 539, 846, 897, 948, 1500
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	1530
PstNI	CAGNNNCTG	1 cut(s)	1617
PsuI	RGATCY	1 cut(s)	720
PsyI	GACNNNGTC	1 cut(s)	868
RsaI	GTAC	3 cut(s)	91, 749, 818
RsaNI	GTAC	3 cut(s)	90, 748, 817
RseI	CAYNNNNRTG	2 cut(s)	116, 1215
SacI	GAGCTC	1 cut(s)	655
SacII	CCGCGG	1 cut(s)	947
SaqAI	TTAA	3 cut(s)	15, 1032, 1182
SatI	GCNGC	8 cut(s)	667, 670, 673, 944, 947, 981, 1270, 1479
Sau3AI	GATC	8 cut(s)	253, 363, 702, 720, 1253, 1405, 1450, 1495
Sau96I	GGNCC	8 cut(s)	50, 381, 505, 539, 846, 897, 948, 1500
SchI	GAGTC	2 cut(s)	102, 257
ScrFI	CCNGG	2 cut(s)	537, 901
SduI	GDGCHC	2 cut(s)	655, 1147
SfaNI	GCATC	2 cut(s)	529, 1423
SfcI	CTRYAG	1 cut(s)	1526
SfoI	GGCGCC	1 cut(s)	604
Sfr303I	CCGCGG	1 cut(s)	947
SfuI	TTCGAA	1 cut(s)	298
SgrAI	CRCCGGYG	1 cut(s)	1024
SgrBI	CCGCGG	1 cut(s)	947
SinI	GGWCC	2 cut(s)	50, 846
SmiMI	CAYNNNNRTG	2 cut(s)	116, 1215
Sse9I	AATT	2 cut(s)	294, 961
SsiI	CCGC	9 cut(s)	666, 670, 673, 850, 944, 946, 980, 1205, 1269
SspDI	GGCGCC	1 cut(s)	602
SspI	AATATT	2 cut(s)	193, 575
SspMI	CTAG	5 cut(s)	45, 57, 173, 812, 1644
SstI	GAGCTC	1 cut(s)	655
StyD4I	CCNGG	2 cut(s)	535, 899
StyI	CCWWGG	3 cut(s)	636, 811, 1446
TaaI	ACNGT	5 cut(s)	155, 733, 821, 916, 976
TaiI	ACGT	3 cut(s)	869, 1022, 1579
TasI	AATT	2 cut(s)	294, 961
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	7 cut(s)	669, 672, 675, 946, 949, 983, 1272
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	3 cut(s)	15, 1032, 1182
Tru9I	TTAA	3 cut(s)	15, 1032, 1182
TscAI	CASTG	3 cut(s)	595, 736, 1622
TseFI	GTSAC	5 cut(s)	445, 821, 966, 1049, 1613
TseI	GCWGC	1 cut(s)	1478
Tsp45I	GTSAC	5 cut(s)	445, 821, 966, 1049, 1613
TspDTI	ATGAA	9 cut(s)	33, 90, 473, 477, 781, 891, 996, 1292, 1562
TspGWI	ACGGA	1 cut(s)	1150
TspRI	CASTG	3 cut(s)	595, 736, 1622
Tth111I	GACNNNGTC	1 cut(s)	868
VpaK11BI	GGWCC	2 cut(s)	50, 846
XapI	RAATTY	1 cut(s)	294
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	1 cut(s)	1214
XmaJI	CCTAGG	1 cut(s)	811
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	5 cut(s)	45, 57, 173, 812, 1644
ZraI	GACGTC	1 cut(s)	867
Zsp2I	ATGCAT	2 cut(s)	406, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.