Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

30311990 .. 30321852

Gene Structure 9863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4629 bp

ATGGCGGACGACGAGCAACCGATCGTGACAGGGAGGCGCCGGAGCCGAGGAGCCGAGGCGTCGGCCCGGTCCAGCGCTCTGGAGCGCCTCCGAGCTCTCCGGCAAGGCGGCCGTCGCTCTGAAAACGCCGAAGACCGGTTCCAGATCAAGATGGAGAAGCCGATCTATGACACGGTCGACGAGGACGAGTACGACGCGATCATCGCCAAGCGCCGCGAGGAGTTCGGGGACTTCATCGACGACGACGACGGCCTAGGGTACCGCGACGACGGCGAGGAAGAGGACTGGACCCGCCGCGGGCTTCCGACGTCGTCGGATGAATCGGACGGCGATATGAGGCCCAGGAGGAGGAAGAAGGTGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGCCGCGGCCCAGAAAGCACAATTCGTCGCTTACTGCGGCGGCTGCGATGATAGGGAAGCAGAGGCTTTCGTCGATGTTCACGTCGTCGGTGTTTAATAAAAGTAGGGATGGTGACAAGGCCAAAGGATTGTCTTGTGATAGCATTGTGGATGATGTGATTGCCGAGTTTGCGCCGGACGAGGCTGATAGAGAGAAACGGAGGAGGGCACAGCCGGCGAGGAGTTTTGTTCCGATTGCCGGTGTTAAGAGTGAGAGAGTGAGTAATGGGGGTGTTGAGTTATCAAGGAGGCTTGAATTGGATAGAATTGTTGCAAATGGTAGTGGTTCTGTGCATTGTAAGGAAATGGATAAAGATTCTGAGGGCAATAAAGAGTTGGATTTCGGAAATTGTCAGCCCCAAATTGAGCAATTCCATGATTTTTTGGAGAATAGTGAGGTGCCCGAGGAGAAGAAGACTGAGGATTCTGCTGAGGTGCAGGCGGAGCCTGTGGTGAAGAAGGAAGAGGTTTTCACTTTGAATGCAAAGATTAAGGAAGATGAGGATCCGGCATTGAGTGCTATGGCAGGATGGAAGGCCGCGATGACTGGTGGGGCCGGGGTTACTGGTGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTCGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGAGTTGTTGTGCAGTTGTAAAGAACATGCAAAGATGTGTCTATGCAATACCGGACAGTCCTTTATTTCAAACTGACGAAATGATGAAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGAACCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGCGCGTTGGAACTTTTCCTTGTTAAAAGGAAGATAAAAGGACCTTCTTGGCTATCAGTTTCAAATTTTTCCATCTGCCCAGCTCCACAACGGGTAAGCTGGTGCAAATTTGAGGTGATCGTGAATGCTCCGAAAGATATAAGGGTCTCAGCTTCCACAAAGAAAACTGTAGATATTCCTCAAGTGGTTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACGAAATTGTCTCTGCATCTGTTGTCTGCTGTAACAAGGCCAAGATTGACACTCCTGTGAAGGACTCAGAATGGAAGAGTCCTGGTATGCTGAGCCACTTTACTGTTGTCCGTAAGCTTGATGGTGGCATATTTCCTATGGGGTTTACTAAAGTGGCTGCAGATAAGAATTCTAAAGCCGGATCAAATGTCTTGAGCATTGAGGGCAGTGAAAGGGCTTTGCTAAACCGTTTGTTCATTGAATTATACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATATCTGGATTTGATCTGGATGTTCTTCTCCACAGAGCTCAGGTTTGCAGAGTGCCAAGCAGCATGTGGTCCAAAATAGGCCGCCTCAAGCGTTCTGTGATGCCTAAGCTTGCAAAAGGAAGCACCATTTTTGGCTCTGGAGCAAGTCCAGGGATCATGTCCTGCATTGCTGGTCGGCTGTTGTGTGATACATATTTGTGTTCCCGTGACTTATTAAAGGAGGTCAGCTATTCCTTGACACAACTTGCACAGACTCAGCTGGGCCAAAACCGGAAGGAGATCACACCGCATGATATTCCTAGAATGTTACAAAAATCTGAGTTTCTCATGGAACTTATTGAATATGGCGAGACAGATGCCTGGTTGTCTATGGGACTCATGTTTCATTTGAGTGCTCTTCCCCTCACACGTCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTCCAAGGTGCAAGGGCACAAAGAGTAGAATATCTCTTACTGCATGCTTTTCATGCAAAAAAGTATATTGTTCCAGACAAGATTCCTCATCTGAAGGATACCAAATTGACAAAACGGAGAACAAATAAGGGTGTTGAGGAAAAAGCTGCTGATGAGTTGGATGTAAATGATGTAAATGTTGATAATGATGCACAGAGTGGTCATGGAAAAGGCAAGAAAGGTCCTGCCTATGCTGGTGGATTGGTATTGGAGCCAAAAAAAGGTTTATATGACAAGTATATATTACTTCTGGACTTCAATAGTCTTTACCCGTCTATTATTCAGGAATACAATATATGCTTCACAACTGTTGAAAGAAATTCAGAAGGATTAGTTTCTCATTTACCTTCTAGTCAAAGACCTGGACTTTTACCTGAGTTGTTAAAAAATTTAGTTGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGAATGCATCTGGTCTCAAGTTCCAGCAACTTGACATTCAACAGCAAGCTCTGAAGCTGACTGCAAACAGTATGTATGGATGCTTGGGATTTTCAAACTCAAGATTTTATGCAAAGCCACTGGCAGAGCTTATAACACTACGGGGCAGGGAGATCCTACAAAGTACTGTGGATCTTGTTCAGAACAATTTGAACTTAGAGGTAATCTATGGTGATACGGACTCAATAATGATTTATAGTGGGCTGGATGATAGTGCGAAAGCAAAAGCAATTGCTGTGAAAGTAATTCAAGAGGTTAACAAGAAGTATAGATGTTTAGAAATTGATCTTGACGGCTTGTACAAGAGAATGCTGCTTCTCAAGAAAAAGAAATATGCGGCTGTGAAGGAGCTAACGAAAAACGAGAAAAAATACGAGGTTATCGAGTGTAAGGGCCTTGATATGGTACGTCGTGACTGGAGTTTACTTTCAAAGGAACTGGGAGATTTCTGCTTAAGTCAAATTTTGTCAGGAGGGTCATCTGAAGATGTTGTTGAATCAATTCATAACTCTCTTACAAAGGTGCAAGAGGACATGAGAAAAGGACAAGTTGCCCTCGAGAAATATATCATCACCAAGACATTAACTAAACCACCAGAAGCCTACCCAGATGGCAAAAACCAGCCACATGTTCAAGTGGCGCAAAGATTGAGGCAAAGTGGTTACTCTACTGGTTGCTCTGTTGGAGATACAGTCCCTTATATTATTTGCTGTGAGCAGGGCACAAGTTCAGATAATTCTACCGGGATTGCTCAACGTGCTAGACATCCTGATGAACTAAAACAAGAAGATGGAAGATGGATGATTGACATTGATTACTACTTGTCCCAACAGATTCATCCTGTTGTATCACGACTTTGTGCTTCAATTCAGGGTACCAGCCCCCAACGCTTGGCTGATTGTTTAGGGATTGACTCATCCAAGTTCAAATCGAATTCAAGTGAAGCTGTCAGAAATGATTCTTCCAGCTTGTTCTTTTCTGTTGACGATGAAGAGAGATATCGGGATTGTGAGTCTTTGATCTTAGCATGTCCTAGCTGCTCTGGTACTTTTGATTGTCCAGCCATCTTCAACTCCATTGCCAAGTCAATCAATGAAAAGCCAACAAGGCCACAAGGAGAAGAATCTTCTAGCGATTTTTGGTGCAGATTGCGCTGTCCAAAATGCCCAGAGGAAGGTGATGTGGGCAGACTGTCTCCTGTAATGATAGCCAATCAGGTCAAAAGGCAAGCAGAGGGTTTTGTTTCAACGTACTACAGGGGCATAACGATGTGTGATGATGAAACTTGCAAATACACCACACGAAGTCTCAACCTCCGGCTTGTTGGTGATGCTGAGAGAGGAACAGTCTGTCCAAACTATCCTCGCTGCAATGGGCATCTTGTAAGAAAGTACACGGAAGCTGATTTGTACAAACAGCTCTCATTTTTCTGCCATGTCTTGGATACAGTACGCTGCGTAGAAAAGATGGAACCTAAGACTAGACTGCCGGTAGAGTTAGAGTTGGCCAAAATTCGCCCCATTGTGACTTTGGCTGCCTCAACAGTTGAAAGGATTCGGGACCGTTGTGCCTACGGGTGGATACAGCTGCAAGATCTTTTTGTTACGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

1542

Amino Acids

172.48

Weight (kDa)

7.37

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_alpha_N	PF12254	27 - 96	3.1e-19	DNA polymerase alpha subunit p180 N terminal
DNA_pol_B_exo1	PF03104	513 - 767	2.2e-26	DNA polymerase family B, exonuclease domain
DNA_pol_B	PF00136	833 - 1295	9.6e-126	DNA polymerase family B
zf-DNA_Pol	PF08996	1333 - 1539	4.5e-43	DNA Polymerase alpha zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3110
AatII	GACGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	1444
Acc65I	GGTACC	2 cut(s)	258, 3890
AccB1I	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3890
AccB7I	CCANNNNNTGG	2 cut(s)	3907, 4456
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	7 cut(s)	197, 216, 264, 297, 394, 968, 1547
AclWI	GGATC	7 cut(s)	926, 939, 1374, 1969, 2222, 3124, 3156
AcoI	YGGCCR	2 cut(s)	109, 4521
AcsI	RAATTY	8 cut(s)	1606, 1649, 1948, 2869, 2938, 3477, 3949, 4527
AcuI	CTGAAG	5 cut(s)	1314, 1478, 2624, 3050, 3519
AcyI	GRCGYC	3 cut(s)	37, 59, 308
AdeI	CACNNNGTG	1 cut(s)	2708
AfeI	AGCGCT	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	3469
AflIII	ACRYGT	2 cut(s)	2468, 3643
AgeI	ACCGGT	1 cut(s)	135
AjiI	CACGTC	2 cut(s)	471, 2471
AjnI	CCWGG	5 cut(s)	341, 1861, 2209, 2420, 2911
AleI	CACNNNNGTG	1 cut(s)	1835
AloI	GAACNNNNNNTCC	2 cut(s)	4351, 4383
Alw21I	GWGCWC	4 cut(s)	97, 1525, 2101, 2458
Alw26I	GTCTC	6 cut(s)	1693, 1795, 2405, 2996, 4215, 4328
AlwI	GGATC	7 cut(s)	926, 939, 1374, 1969, 2222, 3124, 3156
Ama87I	CYCGRG	2 cut(s)	830, 3572
Aor51HI	AGCGCT	1 cut(s)	76
ApoI	RAATTY	8 cut(s)	1606, 1649, 1948, 2869, 2938, 3477, 3949, 4527
AsiGI	ACCGGT	1 cut(s)	135
Asp700I	GAANNNNTTC	3 cut(s)	3516, 3973, 4569
Asp718I	GGTACC	2 cut(s)	258, 3890
AspA2I	CCTAGG	1 cut(s)	253
AspLEI	GCGC	8 cut(s)	39, 77, 87, 213, 562, 1547, 3658, 4170
AsuC2I	CCSGG	4 cut(s)	67, 985, 1478, 3760
AsuHPI	GGTGA	8 cut(s)	512, 892, 1284, 1669, 3200, 3580, 4205, 4355
AvaI	CYCGRG	2 cut(s)	830, 3572
AvaII	GGWCC	7 cut(s)	69, 288, 1115, 1583, 2130, 2732, 4576
AvrII	CCTAGG	1 cut(s)	253
BaeGI	GKGCMC	5 cut(s)	598, 831, 1130, 2530, 3740
BalI	TGGCCA	1 cut(s)	4523
BamHI	GGATCC	1 cut(s)	931
BanI	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3890
BanII	GRGCYC	2 cut(s)	97, 2101
BbsI	GAAGAC	2 cut(s)	138, 848
Bbv12I	GWGCWC	4 cut(s)	97, 1525, 2101, 2458
BbvCI	CCTCAGC	1 cut(s)	858
BceAI	ACGGC	5 cut(s)	96, 265, 286, 343, 3325
BcgI	CGANNNNNNTGC	2 cut(s)	2399, 2433
BciT130I	CCWGG	5 cut(s)	343, 1863, 2211, 2422, 2913
BciVI	GTATCC	3 cut(s)	2602, 4453, 4590
BcnI	CCSGG	4 cut(s)	67, 985, 1478, 3760
BcoDI	GTCTC	6 cut(s)	1693, 1795, 2405, 2996, 4215, 4328
BfaI	CTAG	8 cut(s)	254, 1529, 2361, 2901, 3777, 4050, 4146, 4497
BfmI	CTRYAG	4 cut(s)	1437, 1710, 1938, 4270
BfoI	RGCGCY	4 cut(s)	40, 78, 88, 214
BfrI	CTTAAG	1 cut(s)	3469
BfuAI	ACCTGC	1 cut(s)	1444
BfuI	GTATCC	3 cut(s)	2602, 4453, 4590
BglI	GCCNNNNNGGC	1 cut(s)	4123
BglII	AGATCT	2 cut(s)	1498, 4609
BlnI	CCTAGG	1 cut(s)	253
BlpI	GCTNAGC	1 cut(s)	1871
BmcAI	AGTACT	1 cut(s)	3142
Bme1390I	CCNGG	9 cut(s)	67, 343, 985, 1478, 1863, 2211, 2422, 2913, 3760
Bme18I	GGWCC	7 cut(s)	69, 288, 1115, 1583, 2130, 2732, 4576
BmeT110I	CYCGRG	2 cut(s)	830, 3572
BmgBI	CACGTC	2 cut(s)	471, 2471
BmrFI	CCNGG	9 cut(s)	67, 343, 985, 1478, 1863, 2211, 2422, 2913, 3760
BmrI	ACTGGG	1 cut(s)	3464
BmuI	ACTGGG	1 cut(s)	3464
BpiI	GAAGAC	2 cut(s)	138, 848
BpmI	CTGGAG	3 cut(s)	101, 2220, 3454
Bpu10I	CCTNAGC	3 cut(s)	858, 2100, 2166
Bpu1102I	GCTNAGC	1 cut(s)	1871
BpuEI	CTTGAG	7 cut(s)	1267, 1707, 1993, 2132, 2978, 3061, 3320
BpuMI	CCSGG	4 cut(s)	67, 985, 1478, 3760
BsaBI	GATNNNNATC	2 cut(s)	930, 1053
BsaHI	GRCGYC	3 cut(s)	37, 59, 308
BsaI	GGTCTC	2 cut(s)	1693, 2996
BsaWI	WCCGGW	3 cut(s)	135, 1222, 2331
BsaXI	ACNNNNNCTCC	2 cut(s)	3693, 3723
Bse118I	RCCGGY	4 cut(s)	135, 601, 626, 4504
Bse1I	ACTGG	7 cut(s)	290, 979, 997, 3102, 3437, 3459, 3691
Bse3DI	GCAATG	4 cut(s)	1012, 2226, 4092, 4393
Bse8I	GATNNNNATC	2 cut(s)	930, 1053
BseBI	CCWGG	5 cut(s)	343, 1863, 2211, 2422, 2913
BseJI	GATNNNNATC	2 cut(s)	930, 1053
BseMI	GCAATG	4 cut(s)	1012, 2226, 4092, 4393
BseNI	ACTGG	7 cut(s)	290, 979, 997, 3102, 3437, 3459, 3691
BseRI	GAGGAG	7 cut(s)	63, 233, 361, 604, 622, 848, 2968
BseSI	GKGCMC	5 cut(s)	598, 831, 1130, 2530, 3740
BseX3I	CGGCCG	1 cut(s)	109
BseYI	CCCAGC	2 cut(s)	1621, 2320
BsgI	GTGCAG	3 cut(s)	884, 1203, 4180
Bsh1236I	CGCG	7 cut(s)	197, 216, 264, 297, 394, 968, 1547
Bsh1285I	CGRYCG	3 cut(s)	24, 112, 177
BshNI	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3890
BshTI	ACCGGT	1 cut(s)	135
BsiEI	CGRYCG	3 cut(s)	24, 112, 177
BsiHKAI	GWGCWC	4 cut(s)	97, 1525, 2101, 2458
BsiHKCI	CYCGRG	2 cut(s)	830, 3572
BslFI	GGGAC	5 cut(s)	242, 2448, 3695, 3826, 4589
BsmAI	GTCTC	6 cut(s)	1693, 1795, 2405, 2996, 4215, 4328
BsmFI	GGGAC	5 cut(s)	242, 2448, 3695, 3826, 4589
BsmI	GAATGC	4 cut(s)	913, 1672, 2986, 3330
Bso31I	GGTCTC	2 cut(s)	1693, 2996
BsoBI	CYCGRG	2 cut(s)	830, 3572
Bsp1286I	GDGCHC	9 cut(s)	97, 598, 831, 1130, 1525, 2101, 2458, 2530, 3740
Bsp1407I	TGTACA	2 cut(s)	3315, 4425
Bsp1720I	GCTNAGC	1 cut(s)	1871
BspFNI	CGCG	7 cut(s)	197, 216, 264, 297, 394, 968, 1547
BspMAI	CTGCAG	2 cut(s)	1441, 1942
BspMI	ACCTGC	1 cut(s)	1444
BspPI	GGATC	7 cut(s)	926, 939, 1374, 1969, 2222, 3124, 3156
BspQI	GCTCTTC	2 cut(s)	1530, 2463
BspT107I	GGYRCC	5 cut(s)	36, 258, 826, 1393, 3890
BspTI	CTTAAG	1 cut(s)	3469
BspTNI	GGTCTC	2 cut(s)	1693, 2996
BsrDI	GCAATG	4 cut(s)	1012, 2226, 4092, 4393
BsrFI	RCCGGY	4 cut(s)	135, 601, 626, 4504
BsrGI	TGTACA	2 cut(s)	3315, 4425
BsrI	ACTGG	7 cut(s)	290, 979, 997, 3102, 3437, 3459, 3691
BssAI	RCCGGY	4 cut(s)	135, 601, 626, 4504
BssNI	GRCGYC	3 cut(s)	37, 59, 308
BssT1I	CCWWGG	2 cut(s)	253, 2515
Bst2UI	CCWGG	5 cut(s)	343, 1863, 2211, 2422, 2913
Bst6I	CTCTTC	7 cut(s)	273, 885, 1098, 1530, 1850, 2463, 4002
BstACI	GRCGYC	3 cut(s)	37, 59, 308
BstAFI	CTTAAG	1 cut(s)	3469
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstAUI	TGTACA	2 cut(s)	3315, 4425
BstC8I	GCNNGC	7 cut(s)	299, 603, 867, 2172, 2556, 3024, 4245
BstDSI	CCRYGG	2 cut(s)	295, 392
BstFNI	CGCG	7 cut(s)	197, 216, 264, 297, 394, 968, 1547
BstH2I	RGCGCY	4 cut(s)	40, 78, 88, 214
BstHHI	GCGC	8 cut(s)	39, 77, 87, 213, 562, 1547, 3658, 4170
BstMAI	GTCTC	6 cut(s)	1693, 1795, 2405, 2996, 4215, 4328
BstMCI	CGRYCG	3 cut(s)	24, 112, 177
BstNI	CCWGG	5 cut(s)	343, 1863, 2211, 2422, 2913
BstNSI	RCATGY	6 cut(s)	1090, 1201, 2128, 2558, 3647, 4047
BstSCI	CCNGG	9 cut(s)	65, 341, 983, 1476, 1861, 2209, 2420, 2911, 3758
BstSFI	CTRYAG	4 cut(s)	1437, 1710, 1938, 4270
BstSLI	GKGCMC	5 cut(s)	598, 831, 1130, 2530, 3740
BstUI	CGCG	7 cut(s)	197, 216, 264, 297, 394, 968, 1547
BstV2I	GAAGAC	2 cut(s)	138, 848
BstX2I	RGATCY	6 cut(s)	931, 1366, 1498, 3129, 3148, 4609
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	6 cut(s)	931, 1366, 1498, 3129, 3148, 4609
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	3 cut(s)	2602, 4453, 4590
BtgI	CCRYGG	2 cut(s)	295, 392
BtgZI	GCGATG	3 cut(s)	187, 449, 983
BtrI	CACGTC	2 cut(s)	471, 2471
BtsI	GCAGTG	2 cut(s)	1073, 1993
BtsIMutI	CAGTG	4 cut(s)	1073, 1128, 1993, 3095
BveI	ACCTGC	1 cut(s)	1444
Cac8I	GCNNGC	7 cut(s)	299, 603, 867, 2172, 2556, 3024, 4245
CfoI	GCGC	8 cut(s)	39, 77, 87, 213, 562, 1547, 3658, 4170
Cfr10I	RCCGGY	4 cut(s)	135, 601, 626, 4504
Cfr42I	CCGCGG	2 cut(s)	298, 395
CseI	GACGC	2 cut(s)	48, 203
CspAI	ACCGGT	1 cut(s)	135
DinI	GGCGCC	1 cut(s)	38
DraIII	CACNNNGTG	1 cut(s)	2708
EaeI	YGGCCR	2 cut(s)	109, 4521
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	7 cut(s)	273, 885, 1098, 1530, 1850, 2463, 4002
EarI	CTCTTC	7 cut(s)	273, 885, 1098, 1530, 1850, 2463, 4002
EciI	GGCGGA	2 cut(s)	20, 884
Ecl136II	GAGCTC	2 cut(s)	95, 2099
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	253, 2515
Eco24I	GRGCYC	2 cut(s)	97, 2101
Eco31I	GGTCTC	2 cut(s)	1693, 2996
Eco32I	GATATC	1 cut(s)	4016
Eco47I	GGWCC	7 cut(s)	69, 288, 1115, 1583, 2130, 2732, 4576
Eco47III	AGCGCT	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	95, 2099
Eco57I	CTGAAG	5 cut(s)	1314, 1478, 2624, 3050, 3519
Eco88I	CYCGRG	2 cut(s)	830, 3572
EcoICRI	GAGCTC	2 cut(s)	95, 2099
EcoO109I	RGGNCCY	3 cut(s)	1583, 2732, 3409
EcoRI	GAATTC	2 cut(s)	1948, 3949
EcoRII	CCWGG	5 cut(s)	341, 1861, 2209, 2420, 2911
EcoRV	GATATC	1 cut(s)	4016
EcoT14I	CCWWGG	2 cut(s)	253, 2515
EcoT22I	ATGCAT	1 cut(s)	2986
EcoT38I	GRGCYC	2 cut(s)	97, 2101
EgeI	GGCGCC	1 cut(s)	38
EheI	GGCGCC	1 cut(s)	38
ErhI	CCWWGG	2 cut(s)	253, 2515
FaqI	GGGAC	5 cut(s)	242, 2448, 3695, 3826, 4589
FauI	CCCGC	2 cut(s)	290, 299
FblI	GTMKAC	1 cut(s)	177
FriOI	GRGCYC	2 cut(s)	97, 2101
FspBI	CTAG	8 cut(s)	254, 1529, 2361, 2901, 3777, 4050, 4146, 4497
GlaI	GCGC	8 cut(s)	38, 76, 86, 212, 561, 1546, 3657, 4169
GsaI	CCCAGC	2 cut(s)	1625, 2324
GsuI	CTGGAG	3 cut(s)	101, 2220, 3454
HaeII	RGCGCY	4 cut(s)	40, 78, 88, 214
HgaI	GACGC	2 cut(s)	48, 203
HhaI	GCGC	8 cut(s)	39, 77, 87, 213, 562, 1547, 3658, 4170
Hin1I	GRCGYC	3 cut(s)	37, 59, 308
Hin6I	GCGC	8 cut(s)	37, 75, 85, 211, 560, 1545, 3656, 4168
HinP1I	GCGC	8 cut(s)	37, 75, 85, 211, 560, 1545, 3656, 4168
HincII	GTYRAC	4 cut(s)	178, 1780, 3274, 4000
HindII	GTYRAC	4 cut(s)	178, 1780, 3274, 4000
HindIII	AAGCTT	3 cut(s)	1259, 1895, 2168
HpaI	GTTAAC	2 cut(s)	1780, 3274
HphI	GGTGA	8 cut(s)	512, 892, 1284, 1669, 3200, 3580, 4205, 4355
Hpy166II	GTNNAC	8 cut(s)	178, 468, 1780, 1926, 3274, 3440, 4000, 4410
Hpy8I	GTNNAC	8 cut(s)	178, 468, 1780, 1926, 3274, 3440, 4000, 4410
HpyCH4IV	ACGT	6 cut(s)	308, 470, 2470, 3424, 3772, 4265
HpySE526I	ACGT	6 cut(s)	308, 470, 2470, 3424, 3772, 4265
Hsp92I	GRCGYC	3 cut(s)	37, 59, 308
HspAI	GCGC	8 cut(s)	37, 75, 85, 211, 560, 1545, 3656, 4168
KasI	GGCGCC	1 cut(s)	36
KpnI	GGTACC	2 cut(s)	262, 3894
KroI	GCCGGC	1 cut(s)	601
KroNI	GCCGGC	1 cut(s)	603
KspAI	GTTAAC	2 cut(s)	1780, 3274
KspI	CCGCGG	2 cut(s)	298, 395
LguI	GCTCTTC	2 cut(s)	1530, 2463
MaeI	CTAG	8 cut(s)	254, 1529, 2361, 2901, 3777, 4050, 4146, 4497
MaeII	ACGT	6 cut(s)	308, 470, 2470, 3424, 3772, 4265
MfeI	CAATTG	1 cut(s)	3246
MflI	RGATCY	6 cut(s)	931, 1366, 1498, 3129, 3148, 4609
MhlI	GDGCHC	9 cut(s)	97, 598, 831, 1130, 1525, 2101, 2458, 2530, 3740
MlsI	TGGCCA	1 cut(s)	4523
MluNI	TGGCCA	1 cut(s)	4523
Mly113I	GGCGCC	1 cut(s)	37
MlyI	GAGTC	9 cut(s)	1019, 1274, 1838, 1867, 2308, 2430, 3191, 3923, 4037
MmeI	TCCRAC	9 cut(s)	294, 329, 744, 1344, 1530, 2013, 2032, 2649, 3679
Mox20I	TGGCCA	1 cut(s)	4523
Mph1103I	ATGCAT	1 cut(s)	2986
MroNI	GCCGGC	1 cut(s)	601
MroXI	GAANNNNTTC	3 cut(s)	3516, 3973, 4569
MscI	TGGCCA	1 cut(s)	4523
MslI	CAYNNNNRTG	5 cut(s)	1835, 2257, 2451, 3786, 4283
Msp20I	TGGCCA	1 cut(s)	4523
MspA1I	CMGCKG	6 cut(s)	297, 394, 1002, 2320, 2476, 4603
MspCI	CTTAAG	1 cut(s)	3469
MspR9I	CCNGG	9 cut(s)	67, 343, 985, 1478, 1863, 2211, 2422, 2913, 3760
MunI	CAATTG	1 cut(s)	3246
Mva1269I	GAATGC	4 cut(s)	913, 1672, 2986, 3330
MvaI	CCWGG	5 cut(s)	343, 1863, 2211, 2422, 2913
MvnI	CGCG	7 cut(s)	197, 216, 264, 297, 394, 968, 1547
NaeI	GCCGGC	1 cut(s)	603
NarI	GGCGCC	1 cut(s)	37
NciI	CCSGG	4 cut(s)	67, 985, 1478, 3760
NgoMIV	GCCGGC	1 cut(s)	601
NmeAIII	GCCGAG	4 cut(s)	71, 79, 577, 1300
NmuCI	GTSAC	7 cut(s)	25, 500, 1022, 1071, 2267, 3428, 4540
NsiI	ATGCAT	1 cut(s)	2986
NspI	RCATGY	6 cut(s)	1090, 1201, 2128, 2558, 3647, 4047
OliI	CACNNNNGTG	1 cut(s)	1835
PaeI	GCATGC	1 cut(s)	2558
PaeR7I	CTCGAG	1 cut(s)	3572
PciI	ACATGT	1 cut(s)	3643
PciSI	GCTCTTC	2 cut(s)	1530, 2463
PcsI	WCGNNNNNNNCGW	4 cut(s)	183, 243, 467, 3396
PctI	GAATGC	4 cut(s)	913, 1672, 2986, 3330
PdiI	GCCGGC	1 cut(s)	603
PdmI	GAANNNNTTC	3 cut(s)	3516, 3973, 4569
PflFI	GACNNNGTC	2 cut(s)	173, 310
PflMI	CCANNNNNTGG	2 cut(s)	3907, 4456
PfoI	TCCNGGA	1 cut(s)	1476
PinAI	ACCGGT	1 cut(s)	135
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	9 cut(s)	1019, 1274, 1838, 1866, 2308, 2430, 3191, 3923, 4036
PluTI	GGCGCC	1 cut(s)	40
PpsI	GAGTC	9 cut(s)	1019, 1274, 1838, 1866, 2308, 2430, 3191, 3923, 4036
PpuMI	RGGWCCY	2 cut(s)	1583, 2732
PscI	ACATGT	1 cut(s)	3643
PsiI	TTATAA	1 cut(s)	3110
Psp124BI	GAGCTC	2 cut(s)	97, 2101
Psp5II	RGGWCCY	2 cut(s)	1583, 2732
Psp6I	CCWGG	5 cut(s)	341, 1861, 2209, 2420, 2911
PspFI	CCCAGC	2 cut(s)	1621, 2320
PspGI	CCWGG	5 cut(s)	341, 1861, 2209, 2420, 2911
PspPPI	RGGWCCY	2 cut(s)	1583, 2732
PstI	CTGCAG	2 cut(s)	1441, 1942
PsuI	RGATCY	6 cut(s)	931, 1366, 1498, 3129, 3148, 4609
PsyI	GACNNNGTC	2 cut(s)	173, 310
PvuI	CGATCG	1 cut(s)	24
PvuII	CAGCTG	3 cut(s)	2320, 2476, 4603
RseI	CAYNNNNRTG	5 cut(s)	1835, 2257, 2451, 3786, 4283
SacI	GAGCTC	2 cut(s)	97, 2101
SacII	CCGCGG	2 cut(s)	298, 395
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	2 cut(s)	1530, 2463
SbfI	CCTGCAGG	1 cut(s)	1441
ScaI	AGTACT	1 cut(s)	3142
SchI	GAGTC	9 cut(s)	1019, 1274, 1838, 1867, 2308, 2430, 3191, 3923, 4037
ScrFI	CCNGG	9 cut(s)	67, 343, 985, 1478, 1863, 2211, 2422, 2913, 3760
SdaI	CCTGCAGG	1 cut(s)	1441
SduI	GDGCHC	9 cut(s)	97, 598, 831, 1130, 1525, 2101, 2458, 2530, 3740
SfcI	CTRYAG	4 cut(s)	1437, 1710, 1938, 4270
SfoI	GGCGCC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	3572
Sfr303I	CCGCGG	2 cut(s)	298, 395
SgrBI	CCGCGG	2 cut(s)	298, 395
SinI	GGWCC	7 cut(s)	69, 288, 1115, 1583, 2130, 2732, 4576
SlaI	CTCGAG	1 cut(s)	3572
SmiMI	CAYNNNNRTG	5 cut(s)	1835, 2257, 2451, 3786, 4283
SmlI	CTYRAG	9 cut(s)	1282, 1722, 1972, 2147, 2993, 3076, 3335, 3469, 3572
SmoI	CTYRAG	9 cut(s)	1282, 1722, 1972, 2147, 2993, 3076, 3335, 3469, 3572
SphI	GCATGC	1 cut(s)	2558
Sse8387I	CCTGCAGG	1 cut(s)	1441
SspDI	GGCGCC	1 cut(s)	36
SspMI	CTAG	8 cut(s)	254, 1529, 2361, 2901, 3777, 4050, 4146, 4497
SstI	GAGCTC	2 cut(s)	97, 2101
StyD4I	CCNGG	9 cut(s)	65, 341, 983, 1476, 1861, 2209, 2420, 2911, 3758
StyI	CCWWGG	2 cut(s)	253, 2515
TaiI	ACGT	6 cut(s)	311, 473, 2473, 3427, 3775, 4268
TaqI	TCGA	6 cut(s)	177, 237, 461, 3399, 3573, 3947
TatI	WGTACW	5 cut(s)	1453, 3140, 3315, 4407, 4425
TscAI	CASTG	4 cut(s)	1080, 1135, 1993, 3102
TseFI	GTSAC	7 cut(s)	25, 500, 1022, 1071, 2267, 3428, 4540
Tsp45I	GTSAC	7 cut(s)	25, 500, 1022, 1071, 2267, 3428, 4540
TspGWI	ACGGA	5 cut(s)	601, 1880, 2641, 3209, 4427
TspRI	CASTG	4 cut(s)	1080, 1135, 1993, 3102
Tth111I	GACNNNGTC	2 cut(s)	173, 310
Van91I	CCANNNNNTGG	2 cut(s)	3907, 4456
Vha464I	CTTAAG	1 cut(s)	3469
VpaK11BI	GGWCC	7 cut(s)	69, 288, 1115, 1583, 2130, 2732, 4576
XapI	RAATTY	8 cut(s)	1606, 1649, 1948, 2869, 2938, 3477, 3949, 4527
XceI	RCATGY	6 cut(s)	1090, 1201, 2128, 2558, 3647, 4047
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2124, 4543
XhoI	CTCGAG	1 cut(s)	3572
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	3 cut(s)	3516, 3973, 4569
XspI	CTAG	8 cut(s)	254, 1529, 2361, 2901, 3777, 4050, 4146, 4497
ZraI	GACGTC	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	3142
Zsp2I	ATGCAT	1 cut(s)	2986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.