Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Forward (+)

21478385 .. 21486653

Gene Structure 8269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGATGATCAATTATCCATTCCGGGATCCACCACTATCAACAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGCGCGTTGGAACTTTTCCTTGTTAAAAGGAAGATAAAAGGACCTTCTTGGCTATCAGTTTCAAATTTTTCCATCTGCCCAGCTCCACAACGGGTAAGCTGGTGCAAATTTGAGGTGATCGTGAATGCTTCGAAAGATATAAGGGTCTCAGCTTCCACAAAGAAAACTGTAGATATTCCTCAAGTGGTTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACGAAATTGTCTCTGCATCTGTTGTCTGCTGTAACAAGGCCAAGCGGTGTAAACGGCTGAGCCAAAACGAGCATCATATGTTCAAACATGGGAGTGAAGTGCTGTGCGACTTTTACATTGTAAAGCCTGCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

175

Amino Acids

19.55

Weight (kDa)

9.3

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_B_exo1	PF03104	50 - 147	5.9e-10	DNA polymerase family B, exonuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	2 cut(s)	217, 260
AfaI	GTAC	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	216, 361, 475
AluBI	AGCT	3 cut(s)	236, 252, 305
AluI	AGCT	3 cut(s)	236, 252, 305
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	304, 406
AlwI	GGATC	2 cut(s)	86, 99
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	217, 260
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	461
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	304, 406
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	3 cut(s)	48, 321, 519
BfuAI	ACCTGC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	1 cut(s)	154
BlpI	GCTNAGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	6, 93
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	416, 472
Bpu1102I	GCTNAGC	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	315, 440
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	304, 406
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	35, 72, 91, 109, 270
Bsp1720I	GCTNAGC	1 cut(s)	449
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	314, 441
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	6, 93
BspMAI	CTGCAG	2 cut(s)	52, 523
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	2 cut(s)	86, 99
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	304
BssMI	GATC	5 cut(s)	35, 72, 91, 109, 270
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	301, 449
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	5 cut(s)	38, 75, 94, 112, 273
BstMAI	GTCTC	2 cut(s)	304, 406
BstMBI	GATC	5 cut(s)	35, 72, 91, 109, 270
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	3 cut(s)	48, 321, 519
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	91, 109
BstYI	RGATCY	2 cut(s)	91, 109
BsuRI	GGCC	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	8 cut(s)	205, 236, 252, 305, 431, 448, 453, 517
CviKI_1	RGCY	8 cut(s)	205, 236, 252, 305, 431, 448, 453, 517
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	2 cut(s)	301, 449
DpnI	GATC	5 cut(s)	37, 74, 93, 111, 272
DpnII	GATC	5 cut(s)	35, 72, 91, 109, 270
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	194
FaeI	CATG	1 cut(s)	482
FaiI	YATR	8 cut(s)	24, 44, 63, 150, 293, 468, 470, 480
FatI	CATG	1 cut(s)	478
FauNDI	CATATG	1 cut(s)	468
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	391, 443
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	13, 274
Hpy8I	GTNNAC	2 cut(s)	391, 443
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	5 cut(s)	50, 258, 350, 407, 521
HpyF3I	CTNAG	2 cut(s)	301, 449
Hsp92II	CATG	1 cut(s)	482
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	72
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	35, 72, 91, 109, 270
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	21, 36, 60, 101, 238, 246, 507
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	416, 472
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	343, 422
MalI	GATC	5 cut(s)	37, 74, 93, 111, 272
MboI	GATC	5 cut(s)	35, 72, 91, 109, 270
MboII	GAAGA	2 cut(s)	128, 196
MflI	RGATCY	2 cut(s)	91, 109
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	5 cut(s)	58, 76, 217, 260, 396
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	9, 259, 342
MseI	TTAA	2 cut(s)	177, 390
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	283
MvnI	CGCG	1 cut(s)	158
NciI	CCSGG	1 cut(s)	89
NdeI	CATATG	1 cut(s)	468
NdeII	GATC	5 cut(s)	35, 72, 91, 109, 270
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	2 cut(s)	6, 93
NspV	TTCGAA	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	6, 93
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	52, 523
PsuI	RGATCY	2 cut(s)	91, 109
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	483
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	177, 390
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	5 cut(s)	35, 72, 91, 109, 270
Sau96I	GGNCC	1 cut(s)	194
SbfI	CCTGCAGG	2 cut(s)	52, 523
ScrFI	CCNGG	1 cut(s)	89
SdaI	CCTGCAGG	2 cut(s)	52, 523
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	7 cut(s)	10, 49, 199, 238, 254, 270, 307
SfaNI	GCATC	2 cut(s)	416, 472
SfcI	CTRYAG	3 cut(s)	48, 321, 519
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse8387I	CCTGCAGG	2 cut(s)	52, 523
Sse9I	AATT	5 cut(s)	58, 76, 217, 260, 396
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	284
TasI	AATT	5 cut(s)	58, 76, 217, 260, 396
TatI	WGTACW	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	177, 390
Tru9I	TTAA	2 cut(s)	177, 390
TseI	GCWGC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	217, 260
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.