Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Reverse (-)

22402849 .. 22408381

Gene Structure 5533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG202900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATGAAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGTGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCAATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGATCTACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGAAATGGAGGTCCTCTGGAAGAATACAAAGGTGAAGAAGAAAAATTAGGGACAGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

117

Amino Acids

13.15

Weight (kDa)

5.43

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	123, 237
AcuI	CTGAAG	2 cut(s)	63, 227
AfaI	GTAC	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	4 cut(s)	10, 64, 131, 347
AluI	AGCT	4 cut(s)	10, 64, 131, 347
Alw21I	GWGCWC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	123, 237
ApeKI	GCWGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	33, 335
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	2 cut(s)	278, 352
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	115, 210, 229, 247
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	123, 237
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	115, 210, 229, 247
Bst6I	CTCTTC	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	4 cut(s)	118, 213, 232, 250
BstMBI	GATC	4 cut(s)	115, 210, 229, 247
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	51
BstX2I	RGATCY	3 cut(s)	115, 229, 247
BstYI	RGATCY	3 cut(s)	115, 229, 247
BtsCI	GGATG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	2 cut(s)	68, 139
CviJI	RGCY	5 cut(s)	10, 64, 77, 131, 347
CviKI_1	RGCY	5 cut(s)	10, 64, 77, 131, 347
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	4 cut(s)	117, 212, 231, 249
DpnII	GATC	4 cut(s)	115, 210, 229, 247
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	63, 227
EcoO109I	RGGNCCY	1 cut(s)	302
FaeI	CATG	2 cut(s)	71, 142
FaiI	YATR	6 cut(s)	69, 140, 162, 182, 201, 288
FatI	CATG	2 cut(s)	67, 138
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	278, 352
GluI	GCNGC	1 cut(s)	65
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	2 cut(s)	71, 142
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	2 cut(s)	33, 335
Hpy188I	TCNGA	2 cut(s)	82, 178
Hpy188III	TCNNGA	2 cut(s)	151, 308
HpyCH4V	TGCA	2 cut(s)	67, 188
Hsp92II	CATG	2 cut(s)	71, 142
Kzo9I	GATC	4 cut(s)	115, 210, 229, 247
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	5 cut(s)	159, 174, 198, 239, 293
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	278, 352
MalI	GATC	4 cut(s)	117, 212, 231, 249
MboI	GATC	4 cut(s)	115, 210, 229, 247
MboII	GAAGA	5 cut(s)	220, 266, 323, 338, 341
MflI	RGATCY	3 cut(s)	115, 229, 247
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	83, 95, 196, 214, 335
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	19, 147, 293, 315
MseI	TTAA	1 cut(s)	86
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	227
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	4 cut(s)	115, 210, 229, 247
NlaIII	CATG	2 cut(s)	71, 142
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	3 cut(s)	115, 229, 247
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	4 cut(s)	115, 210, 229, 247
Sau96I	GGNCC	1 cut(s)	302
SbfI	CCTGCAGG	1 cut(s)	190
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	227
SdaI	CCTGCAGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	8 cut(s)	12, 66, 133, 148, 187, 304, 325, 349
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse8387I	CCTGCAGG	1 cut(s)	190
Sse9I	AATT	5 cut(s)	83, 95, 196, 214, 335
SspMI	CTAG	2 cut(s)	278, 352
StyD4I	CCNGG	1 cut(s)	225
TasI	AATT	5 cut(s)	83, 95, 196, 214, 335
TatI	WGTACW	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	20, 108
VpaK11BI	GGWCC	1 cut(s)	302
XspI	CTAG	2 cut(s)	278, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.