DNA polymerase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 319, 468, 541 |
| AccI | GTMKAC | 2 cut(s) | 454, 502 |
| AciI | CCGC | 6 cut(s) | 53, 86, 89, 92, 317, 382 |
| AclWI | GGATC | 1 cut(s) | 374 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 15, 287, 329, 471 |
| AgsI | TTSAA | 1 cut(s) | 440 |
| AjnI | CCWGG | 3 cut(s) | 8, 464, 563 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 396, 428 |
| Alw26I | GTCTC | 1 cut(s) | 238 |
| AlwI | GGATC | 1 cut(s) | 374 |
| Ama87I | CYCGRG | 1 cut(s) | 459 |
| AoxI | GGCC | 2 cut(s) | 5, 168 |
| ApeKI | GCWGC | 1 cut(s) | 55 |
| AspLEI | GCGC | 1 cut(s) | 471 |
| AspS9I | GGNCC | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 2 cut(s) | 173, 344 |
| AsuNHI | GCTAGC | 1 cut(s) | 475 |
| AvaI | CYCGRG | 1 cut(s) | 459 |
| BaeGI | GKGCMC | 1 cut(s) | 259 |
| BanI | GGYRCC | 3 cut(s) | 319, 468, 541 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 67 |
| BccI | CCATC | 5 cut(s) | 94, 152, 323, 401, 501 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BciT130I | CCWGG | 3 cut(s) | 10, 466, 565 |
| BcoDI | GTCTC | 1 cut(s) | 238 |
| BfaI | CTAG | 1 cut(s) | 476 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BisI | GCNGC | 6 cut(s) | 53, 56, 87, 90, 93, 383 |
| BlsI | GCNGC | 6 cut(s) | 54, 57, 88, 91, 94, 384 |
| Bme1390I | CCNGG | 3 cut(s) | 10, 466, 565 |
| BmeT110I | CYCGRG | 1 cut(s) | 459 |
| BmgT120I | GGNCC | 1 cut(s) | 6 |
| BmiI | GGNNCC | 4 cut(s) | 51, 321, 470, 543 |
| BmrFI | CCNGG | 3 cut(s) | 10, 466, 565 |
| BmtI | GCTAGC | 1 cut(s) | 479 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| BpmI | CTGGAG | 1 cut(s) | 423 |
| BpuEI | CTTGAG | 1 cut(s) | 492 |
| Bsa29I | ATCGAT | 1 cut(s) | 369 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 1 cut(s) | 8 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 396, 426 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 15, 287, 329, 471 |
| Bse118I | RCCGGY | 3 cut(s) | 136, 262, 471 |
| BseBI | CCWGG | 3 cut(s) | 10, 466, 565 |
| BseCI | ATCGAT | 1 cut(s) | 369 |
| BseDI | CCNNGG | 1 cut(s) | 8 |
| BseGI | GGATG | 4 cut(s) | 163, 205, 232, 481 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 15, 287, 329, 471 |
| BseRI | GAGGAG | 3 cut(s) | 28, 265, 283 |
| BseSI | GKGCMC | 1 cut(s) | 259 |
| BseXI | GCAGC | 1 cut(s) | 67 |
| BshFI | GGCC | 2 cut(s) | 7, 170 |
| BshNI | GGYRCC | 3 cut(s) | 319, 468, 541 |
| BshVI | ATCGAT | 1 cut(s) | 369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 459 |
| BsiSI | CCGG | 5 cut(s) | 137, 224, 263, 418, 472 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 15, 287, 329, 471 |
| BsmAI | GTCTC | 1 cut(s) | 238 |
| BsmBI | CGTCTC | 1 cut(s) | 238 |
| BsnI | GGCC | 2 cut(s) | 7, 170 |
| BsoBI | CYCGRG | 1 cut(s) | 459 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp143I | GATC | 4 cut(s) | 366, 535, 546, 553 |
| BspACI | CCGC | 6 cut(s) | 53, 86, 89, 92, 317, 382 |
| BspANI | GGCC | 2 cut(s) | 7, 170 |
| BspDI | ATCGAT | 1 cut(s) | 369 |
| BspLI | GGNNCC | 4 cut(s) | 51, 321, 470, 543 |
| BspOI | GCTAGC | 1 cut(s) | 479 |
| BspPI | GGATC | 1 cut(s) | 374 |
| BspT107I | GGYRCC | 3 cut(s) | 319, 468, 541 |
| BsrFI | RCCGGY | 3 cut(s) | 136, 262, 471 |
| BssAI | RCCGGY | 3 cut(s) | 136, 262, 471 |
| BssECI | CCNNGG | 1 cut(s) | 8 |
| BssMI | GATC | 4 cut(s) | 366, 535, 546, 553 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| Bst2UI | CCWGG | 3 cut(s) | 10, 466, 565 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 518 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 3 cut(s) | 264, 473, 477 |
| BstF5I | GGATG | 4 cut(s) | 163, 205, 232, 481 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 1 cut(s) | 471 |
| BstKTI | GATC | 4 cut(s) | 369, 538, 549, 556 |
| BstMAI | GTCTC | 1 cut(s) | 238 |
| BstMBI | GATC | 4 cut(s) | 366, 535, 546, 553 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 92, 263, 432 |
| BstNI | CCWGG | 3 cut(s) | 10, 466, 565 |
| BstSCI | CCNGG | 3 cut(s) | 8, 464, 563 |
| BstSLI | GKGCMC | 1 cut(s) | 259 |
| BstV1I | GCAGC | 1 cut(s) | 67 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| Bsu15I | ATCGAT | 1 cut(s) | 369 |
| BsuRI | GGCC | 2 cut(s) | 7, 170 |
| BsuTUI | ATCGAT | 1 cut(s) | 369 |
| BtgZI | GCGATG | 2 cut(s) | 110, 117 |
| BtsCI | GGATG | 4 cut(s) | 163, 205, 232, 481 |
| BtsI | GCAGTG | 1 cut(s) | 428 |
| BtsIMutI | CAGTG | 3 cut(s) | 428, 514, 549 |
| Cac8I | GCNNGC | 3 cut(s) | 264, 473, 477 |
| CfoI | GCGC | 1 cut(s) | 471 |
| Cfr10I | RCCGGY | 3 cut(s) | 136, 262, 471 |
| Cfr13I | GGNCC | 1 cut(s) | 6 |
| ClaI | ATCGAT | 1 cut(s) | 369 |
| DinI | GGCGCC | 1 cut(s) | 470 |
| DpnI | GATC | 4 cut(s) | 368, 537, 548, 555 |
| DpnII | GATC | 4 cut(s) | 366, 535, 546, 553 |
| Eco88I | CYCGRG | 1 cut(s) | 459 |
| EcoRII | CCWGG | 3 cut(s) | 8, 464, 563 |
| EgeI | GGCGCC | 1 cut(s) | 470 |
| EheI | GGCGCC | 1 cut(s) | 470 |
| Esp3I | CGTCTC | 1 cut(s) | 238 |
| FaiI | YATR | 1 cut(s) | 197 |
| FblI | GTMKAC | 2 cut(s) | 454, 502 |
| Fnu4HI | GCNGC | 6 cut(s) | 53, 56, 87, 90, 93, 383 |
| FokI | GGATG | 4 cut(s) | 170, 212, 239, 468 |
| Fsp4HI | GCNGC | 6 cut(s) | 53, 56, 87, 90, 93, 383 |
| FspBI | CTAG | 1 cut(s) | 476 |
| GlaI | GCGC | 1 cut(s) | 470 |
| GluI | GCNGC | 6 cut(s) | 53, 56, 87, 90, 93, 383 |
| GsuI | CTGGAG | 1 cut(s) | 423 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HaeIII | GGCC | 2 cut(s) | 7, 170 |
| HapII | CCGG | 5 cut(s) | 137, 224, 263, 418, 472 |
| HhaI | GCGC | 1 cut(s) | 471 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin6I | GCGC | 1 cut(s) | 469 |
| HinP1I | GCGC | 1 cut(s) | 469 |
| HincII | GTYRAC | 2 cut(s) | 455, 503 |
| HindII | GTYRAC | 2 cut(s) | 455, 503 |
| HinfI | GANTC | 1 cut(s) | 560 |
| HpaII | CCGG | 5 cut(s) | 137, 224, 263, 418, 472 |
| HphI | GGTGA | 2 cut(s) | 173, 344 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 455, 503 |
| Hpy188I | TCNGA | 3 cut(s) | 282, 290, 353 |
| Hpy188III | TCNNGA | 1 cut(s) | 557 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 455, 503 |
| Hpy99I | CGWCG | 4 cut(s) | 79, 124, 456, 504 |
| HpyAV | CCTTC | 5 cut(s) | 28, 34, 40, 446, 455 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 518 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 92, 263, 432 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| HspAI | GCGC | 1 cut(s) | 469 |
| KasI | GGCGCC | 1 cut(s) | 468 |
| KroI | GCCGGC | 2 cut(s) | 262, 471 |
| KroNI | GCCGGC | 2 cut(s) | 264, 473 |
| Kzo9I | GATC | 4 cut(s) | 366, 535, 546, 553 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| Lsp1109I | GCAGC | 1 cut(s) | 67 |
| MaeI | CTAG | 1 cut(s) | 476 |
| MaeIII | GTNAC | 1 cut(s) | 161 |
| MalI | GATC | 4 cut(s) | 368, 537, 548, 555 |
| MboI | GATC | 4 cut(s) | 366, 535, 546, 553 |
| MboII | GAAGA | 4 cut(s) | 31, 43, 440, 488 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MluCI | AATT | 1 cut(s) | 70 |
| Mly113I | GGCGCC | 1 cut(s) | 469 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MmeI | TCCRAC | 1 cut(s) | 331 |
| MroNI | GCCGGC | 2 cut(s) | 262, 471 |
| MseI | TTAA | 2 cut(s) | 144, 294 |
| MspI | CCGG | 5 cut(s) | 137, 224, 263, 418, 472 |
| MspR9I | CCNGG | 3 cut(s) | 10, 466, 565 |
| MvaI | CCWGG | 3 cut(s) | 10, 466, 565 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 92, 263, 432 |
| NaeI | GCCGGC | 2 cut(s) | 264, 473 |
| NarI | GGCGCC | 1 cut(s) | 469 |
| NdeII | GATC | 4 cut(s) | 366, 535, 546, 553 |
| NgoMIV | GCCGGC | 2 cut(s) | 262, 471 |
| NheI | GCTAGC | 1 cut(s) | 475 |
| NlaIV | GGNNCC | 4 cut(s) | 51, 321, 470, 543 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| PaeR7I | CTCGAG | 1 cut(s) | 459 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 457 |
| PdiI | GCCGGC | 2 cut(s) | 264, 473 |
| PkrI | GCNGC | 6 cut(s) | 54, 57, 88, 91, 94, 384 |
| PleI | GAGTC | 1 cut(s) | 554 |
| PluTI | GGCGCC | 1 cut(s) | 472 |
| PpsI | GAGTC | 1 cut(s) | 554 |
| Psp6I | CCWGG | 3 cut(s) | 8, 464, 563 |
| PspGI | CCWGG | 3 cut(s) | 8, 464, 563 |
| PspN4I | GGNNCC | 4 cut(s) | 51, 321, 470, 543 |
| PspPI | GGNCC | 1 cut(s) | 6 |
| PspXI | VCTCGAGB | 1 cut(s) | 459 |
| SalI | GTCGAC | 2 cut(s) | 453, 501 |
| SaqAI | TTAA | 2 cut(s) | 144, 294 |
| SatI | GCNGC | 6 cut(s) | 53, 56, 87, 90, 93, 383 |
| Sau3AI | GATC | 4 cut(s) | 366, 535, 546, 553 |
| Sau96I | GGNCC | 1 cut(s) | 6 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 3 cut(s) | 10, 466, 565 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SetI | ASST | 4 cut(s) | 380, 447, 460, 508 |
| SfoI | GGCGCC | 1 cut(s) | 470 |
| Sfr274I | CTCGAG | 1 cut(s) | 459 |
| SgrAI | CRCCGGYG | 1 cut(s) | 136 |
| SlaI | CTCGAG | 1 cut(s) | 459 |
| SmlI | CTYRAG | 2 cut(s) | 459, 507 |
| SmoI | CTYRAG | 2 cut(s) | 459, 507 |
| Sse9I | AATT | 1 cut(s) | 70 |
| SsiI | CCGC | 6 cut(s) | 53, 86, 89, 92, 317, 382 |
| SspDI | GGCGCC | 1 cut(s) | 468 |
| SspMI | CTAG | 1 cut(s) | 476 |
| StyD4I | CCNGG | 3 cut(s) | 8, 464, 563 |
| TaaI | ACNGT | 2 cut(s) | 25, 518 |
| TaqI | TCGA | 6 cut(s) | 122, 327, 369, 454, 460, 502 |
| TasI | AATT | 1 cut(s) | 70 |
| TauI | GCSGC | 5 cut(s) | 55, 89, 92, 95, 385 |
| Tru1I | TTAA | 2 cut(s) | 144, 294 |
| Tru9I | TTAA | 2 cut(s) | 144, 294 |
| TscAI | CASTG | 3 cut(s) | 428, 521, 556 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| TseI | GCWGC | 1 cut(s) | 55 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 1 cut(s) | 405 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| TspRI | CASTG | 3 cut(s) | 428, 521, 556 |
| XhoI | CTCGAG | 1 cut(s) | 459 |
| XmiI | GTMKAC | 2 cut(s) | 454, 502 |
| XspI | CTAG | 1 cut(s) | 476 |