Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000310

Physical Location & Seq

Genomic Coordinates Forward (+)

24403887 .. 24444335

Gene Structure 40449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG125400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGCAGGATGGAAGGTCGCGATAACTGGTGGGGCTGGGCTTACTGGTGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTCGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGAGTTGTTGTGCGGTTGTAAAGAACATGCAAAGATGTGTCTATGCAATTCCGGACAGTCCTTTATTTCAAACTGACGAAATGATGAAGCTTGAAAAGGATGTCGAGGACTCAAGGATTTCACCCACAGATTTTTGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATTAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGATCCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGCGCGTTGGAACTTTTCCTTGTTAAAAGGAAGATAAAAGGACCTTCTTGGCTATCAGTTTCAAATTTTTCCATCTGCTCAGCTCCACAACGGGTAAGCTGGTGCAAATTTGAGGTGATCGTGAATGCTCCGAAAGATATAAGGGTCTCAGCTTCCATAAAGAAAACTGTAGATATTCCTCAAGTGGTTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACGAAATTGTCTCTGCATCTGTTGTCTGCTGTAACAAGGCCAAGCTTGATGGTGGCATATTTCCTATGGGGTTTACTAAAGTGGCTGCAGATAAGAATTCTAAAGCCGGATCAAATGTCTTGAGCATTGAGGGCAGTTTAACGATGAGAACCTTTCCAGAAGGCTTCCTAGAATTCTTCCTGGCAAGAACGATTCTTGACACTGATTCACTGAGGGTTTTGGCTTTGGATGACAATCCTCTCAATGGCATCATGCCTGATTCTTTTAGAAATCAATCTTATTCCTTCCAGAACATTTATGCCCCAAGGTGCCAAATCAAAGGTCACATACCATCATCAATTGGTTTTTTGAAAAACTTGACCTCCCTTGTCTTGTTGAACAACAATATGACTGGAAATCTTCCATCATCAATTGGGGGATTGGAGATGATGCATAGATTGTATCTTGATAGTAACAATATCGAAGGGCTCATTCCAGATGAGCTTTGTCTTTTGAGGAACCTAGGAGAGCTATTACTATCAAATAACAACTTCTCAGGAGTGATCCCAAGTTGTATAGCAAACCTTGAAGGCCTTCAAAAAGTCCTCCTCAATTCCAATAGACTGACATCAACCGTACCAATGAGTCTATGGAACCTCGAAAATCTCGTGTTCCTGGATTTGTCATTCAATTCTCTTAGTGGAGACTTACCTTCAAGCATGAGAAAGACCAAGATTTTGCAACTGAATAAATCTTATAGTCAAAGAAGTAAGGAGAATGGTAAGCAACTAGAGCAAGAGGTCGTACCTAAGTCAAAAGAAGATAGGCAACTTCGGCACTCAAAGATGAAGTCGAAGTGCGGCTTAACAGTAAAGCCAGAAGCTTGGTCTAGTTGGAAGAGAGCGTCTGTTGCTGCTAAATCAAGCGGTGTTCAGAAAATTTACATTAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

588

Amino Acids

64.81

Weight (kDa)

8.6

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_B_exo1	PF03104	197 - 291	3.4e-08	DNA polymerase family B, exonuclease domain
LRR_14	PF23598	390 - 560	3.1e-07	Leucine-rich repeat region
LRR_8	PF13855	443 - 503	2.9e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67100 AT5G67100
fragaria_vesca	FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica	MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica	Prupe.7G131600_v2.0.a1
pyrus_communis	pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis	RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata	RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora	Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa	Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha	Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana	Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	2 cut(s)	445, 1140
AccII	CGCG	2 cut(s)	20, 599
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	5 cut(s)	54, 236, 377, 1671, 1737
AclWI	GGATC	5 cut(s)	426, 527, 540, 949, 1369
AcsI	RAATTY	5 cut(s)	658, 701, 928, 1004, 1749
AcuI	CTGAAG	2 cut(s)	366, 530
AfaI	GTAC	3 cut(s)	507, 1449, 1617
AfiI	CCNNNNNNNGG	2 cut(s)	176, 1076
AjnI	CCWGG	2 cut(s)	1011, 1485
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	3 cut(s)	745, 847, 1509
AlwI	GGATC	5 cut(s)	426, 527, 540, 949, 1369
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	2 cut(s)	870, 1402
ApeKI	GCWGC	5 cut(s)	51, 367, 594, 917, 1724
ApoI	RAATTY	5 cut(s)	658, 701, 928, 1004, 1749
ArsI	GACNNNNNNTTYG	6 cut(s)	1138, 1170, 1531, 1563, 1646, 1678
Asp700I	GAANNNNTTC	1 cut(s)	1404
AspA2I	CCTAGG	1 cut(s)	1333
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	167, 635
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	336, 721
AvaII	GGWCC	2 cut(s)	167, 635
AvrII	CCTAGG	1 cut(s)	1333
BaeGI	GKGCMC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	2 cut(s)	445, 1140
BanII	GRGCYC	1 cut(s)	1302
BauI	CACGAG	1 cut(s)	1478
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	5 cut(s)	63, 354, 606, 904, 1711
BccI	CCATC	6 cut(s)	3, 113, 674, 875, 1171, 1243
BciT130I	CCWGG	2 cut(s)	1013, 1487
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	745, 847, 1509
BfaI	CTAG	5 cut(s)	581, 1001, 1334, 1601, 1701
BfmI	CTRYAG	3 cut(s)	489, 762, 918
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	8 cut(s)	52, 55, 368, 378, 595, 918, 1672, 1725
BlnI	CCTAGG	1 cut(s)	1333
BlpI	GCTNAGC	1 cut(s)	673
BlsI	GCNGC	8 cut(s)	53, 56, 369, 379, 596, 919, 1673, 1726
Bme1390I	CCNGG	3 cut(s)	530, 1013, 1487
Bme18I	GGWCC	2 cut(s)	167, 635
BmgT120I	GGNCC	2 cut(s)	167, 635
BmiI	GGNNCC	5 cut(s)	447, 534, 1142, 1331, 1466
BmrFI	CCNGG	3 cut(s)	530, 1013, 1487
BmsI	GCATC	5 cut(s)	136, 364, 857, 1089, 1251
Bpu1102I	GCTNAGC	1 cut(s)	673
BpuEI	CTTGAG	3 cut(s)	319, 759, 973
BpuMI	CCSGG	1 cut(s)	530
BsaBI	GATNNNNATC	2 cut(s)	105, 1065
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	2 cut(s)	1136, 1333
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	1178, 1208
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 1076
Bse1I	ACTGG	3 cut(s)	31, 49, 1228
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	2 cut(s)	105, 1065
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	1013, 1487
BseDI	CCNNGG	2 cut(s)	1136, 1333
BseGI	GGATG	3 cut(s)	14, 328, 1066
BseJI	GATNNNNATC	2 cut(s)	105, 1065
BseLI	CCNNNNNNNGG	2 cut(s)	176, 1076
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	4 cut(s)	687, 756, 1034, 1380
BseNI	ACTGG	3 cut(s)	31, 49, 1228
BseRI	GAGGAG	1 cut(s)	1409
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	5 cut(s)	63, 354, 606, 904, 1711
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	20, 599
BshFI	GGCC	2 cut(s)	872, 1404
BshNI	GGYRCC	2 cut(s)	445, 1140
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	3 cut(s)	275, 529, 939
BslI	CCNNNNNNNGG	2 cut(s)	176, 1076
BsmAI	GTCTC	3 cut(s)	745, 847, 1509
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	872, 1404
Bso31I	GGTCTC	1 cut(s)	745
Bsp1286I	GDGCHC	3 cut(s)	182, 577, 1302
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
Bsp1720I	GCTNAGC	1 cut(s)	673
Bsp68I	TCGCGA	1 cut(s)	20
BspACI	CCGC	5 cut(s)	54, 236, 377, 1671, 1737
BspANI	GGCC	2 cut(s)	872, 1404
BspCNI	CTCAG	4 cut(s)	686, 755, 1035, 1379
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	20, 599
BspLI	GGNNCC	5 cut(s)	447, 534, 1142, 1331, 1466
BspMAI	CTGCAG	2 cut(s)	493, 922
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	5 cut(s)	426, 527, 540, 949, 1369
BspQI	GCTCTTC	1 cut(s)	582
BspT107I	GGYRCC	2 cut(s)	445, 1140
BspTNI	GGTCTC	1 cut(s)	745
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	31, 49, 1228
BssECI	CCNNGG	2 cut(s)	1136, 1333
BssMI	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
BssSI	CACGAG	1 cut(s)	1478
BssT1I	CCWWGG	2 cut(s)	1136, 1333
Bst2BI	CACGAG	1 cut(s)	1478
Bst2UI	CCWGG	2 cut(s)	1013, 1487
Bst4CI	ACNGT	5 cut(s)	184, 281, 763, 1447, 1681
Bst6I	CTCTTC	3 cut(s)	150, 582, 1703
BstDEI	CTNAG	6 cut(s)	673, 742, 1043, 1366, 1508, 1620
BstF5I	GGATG	3 cut(s)	14, 328, 1066
BstFNI	CGCG	2 cut(s)	20, 599
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	9 cut(s)	109, 421, 479, 516, 535, 553, 714, 944, 1377
BstMAI	GTCTC	3 cut(s)	745, 847, 1509
BstMBI	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
BstMWI	GCNNNNNNNGC	4 cut(s)	963, 1603, 1645, 1721
BstNI	CCWGG	2 cut(s)	1013, 1487
BstNSI	RCATGY	2 cut(s)	142, 253
BstSCI	CCNGG	3 cut(s)	528, 1011, 1485
BstSFI	CTRYAG	3 cut(s)	489, 762, 918
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	2 cut(s)	20, 599
BstV1I	GCAGC	5 cut(s)	63, 354, 606, 904, 1711
BstX2I	RGATCY	3 cut(s)	418, 532, 550
BstXI	CCANNNNNNTGG	1 cut(s)	1695
BstYI	RGATCY	3 cut(s)	418, 532, 550
BsuRI	GGCC	2 cut(s)	872, 1404
BtsCI	GGATG	3 cut(s)	14, 328, 1066
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	4 cut(s)	125, 180, 1032, 1040
BtuMI	TCGCGA	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	167, 635
CseI	GACGC	1 cut(s)	1704
Csp6I	GTAC	3 cut(s)	506, 1448, 1616
CviAII	CATG	6 cut(s)	139, 250, 371, 442, 1084, 1531
CviQI	GTAC	3 cut(s)	506, 1448, 1616
DdeI	CTNAG	6 cut(s)	673, 742, 1043, 1366, 1508, 1620
DpnI	GATC	9 cut(s)	108, 420, 478, 515, 534, 552, 713, 943, 1376
DpnII	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
Eam1104I	CTCTTC	3 cut(s)	150, 582, 1703
EarI	CTCTTC	3 cut(s)	150, 582, 1703
Eco130I	CCWWGG	2 cut(s)	1136, 1333
Eco147I	AGGCCT	1 cut(s)	1404
Eco24I	GRGCYC	1 cut(s)	1302
Eco31I	GGTCTC	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	167, 635
Eco57I	CTGAAG	2 cut(s)	366, 530
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRI	GAATTC	2 cut(s)	928, 1004
EcoRII	CCWGG	2 cut(s)	1011, 1485
EcoT14I	CCWWGG	2 cut(s)	1136, 1333
EcoT22I	ATGCAT	1 cut(s)	1266
EcoT38I	GRGCYC	1 cut(s)	1302
ErhI	CCWWGG	2 cut(s)	1136, 1333
FaeI	CATG	6 cut(s)	142, 253, 374, 445, 1087, 1534
FalI	AAGNNNNNCTT	2 cut(s)	1658, 1690
FatI	CATG	6 cut(s)	138, 249, 370, 441, 1083, 1530
Fnu4HI	GCNGC	8 cut(s)	52, 55, 368, 378, 595, 918, 1672, 1725
FokI	GGATG	3 cut(s)	21, 335, 1073
FriOI	GRGCYC	1 cut(s)	1302
Fsp4HI	GCNGC	8 cut(s)	52, 55, 368, 378, 595, 918, 1672, 1725
FspBI	CTAG	5 cut(s)	581, 1001, 1334, 1601, 1701
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	8 cut(s)	52, 55, 368, 378, 595, 918, 1672, 1725
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	872, 1404
HapII	CCGG	3 cut(s)	275, 529, 939
HgaI	GACGC	1 cut(s)	1704
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	6 cut(s)	142, 253, 374, 445, 1087, 1534
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HindIII	AAGCTT	3 cut(s)	311, 875, 1692
HinfI	GANTC	7 cut(s)	77, 113, 332, 1024, 1037, 1091, 1456
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	3 cut(s)	275, 529, 939
HphI	GGTGA	2 cut(s)	336, 721
Hpy166II	GTNNAC	2 cut(s)	832, 906
Hpy188I	TCNGA	7 cut(s)	100, 118, 225, 385, 481, 726, 1746
Hpy8I	GTNNAC	2 cut(s)	832, 906
HpyCH4III	ACNGT	5 cut(s)	184, 281, 763, 1447, 1681
HpyF10VI	GCNNNNNNNGC	4 cut(s)	963, 1603, 1645, 1721
HpyF3I	CTNAG	6 cut(s)	673, 742, 1043, 1366, 1508, 1620
Hsp92II	CATG	6 cut(s)	142, 253, 374, 445, 1087, 1534
HspAI	GCGC	1 cut(s)	597
Kpn2I	TCCGGA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	2 cut(s)	682, 727
Lsp1109I	GCAGC	5 cut(s)	63, 354, 606, 904, 1711
LweI	GCATC	5 cut(s)	136, 364, 857, 1089, 1251
MaeI	CTAG	5 cut(s)	581, 1001, 1334, 1601, 1701
MaeIII	GTNAC	6 cut(s)	74, 123, 784, 863, 1154, 1283
MalI	GATC	9 cut(s)	108, 420, 478, 515, 534, 552, 713, 943, 1376
MboI	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
MboII	GAAGA	8 cut(s)	167, 523, 569, 637, 1000, 1223, 1643, 1720
MfeI	CAATTG	2 cut(s)	1170, 1242
MflI	RGATCY	3 cut(s)	418, 532, 550
MhlI	GDGCHC	3 cut(s)	182, 577, 1302
MlyI	GAGTC	3 cut(s)	71, 326, 1465
MmeI	TCCRAC	3 cut(s)	396, 582, 1685
Mph1103I	ATGCAT	1 cut(s)	1266
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	1404
MseI	TTAA	7 cut(s)	204, 389, 618, 831, 971, 1676, 1758
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	3 cut(s)	275, 529, 939
MspR9I	CCNGG	3 cut(s)	530, 1013, 1487
MunI	CAATTG	2 cut(s)	1170, 1242
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	2 cut(s)	1013, 1487
MvnI	CGCG	2 cut(s)	20, 599
MwoI	GCNNNNNNNGC	4 cut(s)	963, 1603, 1645, 1721
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
NlaIII	CATG	6 cut(s)	142, 253, 374, 445, 1087, 1534
NlaIV	GGNNCC	5 cut(s)	447, 534, 1142, 1331, 1466
NmuCI	GTSAC	3 cut(s)	74, 123, 1154
NruI	TCGCGA	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	1266
NspI	RCATGY	2 cut(s)	142, 253
PceI	AGGCCT	1 cut(s)	1404
PciSI	GCTCTTC	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	1476
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	1404
PfeI	GAWTC	4 cut(s)	113, 1024, 1037, 1091
PfoI	TCCNGGA	2 cut(s)	528, 1485
PkrI	GCNGC	8 cut(s)	53, 56, 369, 379, 596, 919, 1673, 1726
PleI	GAGTC	3 cut(s)	71, 326, 1464
PpsI	GAGTC	3 cut(s)	71, 326, 1464
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	1011, 1485
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	1011, 1485
PspN4I	GGNNCC	5 cut(s)	447, 534, 1142, 1331, 1466
PspPI	GGNCC	2 cut(s)	167, 635
PspPPI	RGGWCCY	1 cut(s)	635
PstI	CTGCAG	2 cut(s)	493, 922
PsuI	RGATCY	3 cut(s)	418, 532, 550
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	3 cut(s)	507, 1449, 1617
RsaNI	GTAC	3 cut(s)	506, 1448, 1616
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	7 cut(s)	204, 389, 618, 831, 971, 1676, 1758
SatI	GCNGC	8 cut(s)	52, 55, 368, 378, 595, 918, 1672, 1725
Sau3AI	GATC	9 cut(s)	106, 418, 476, 513, 532, 550, 711, 941, 1374
Sau96I	GGNCC	2 cut(s)	167, 635
SbfI	CCTGCAGG	1 cut(s)	493
SchI	GAGTC	3 cut(s)	71, 326, 1465
ScrFI	CCNGG	3 cut(s)	530, 1013, 1487
SdaI	CCTGCAGG	1 cut(s)	493
SduI	GDGCHC	3 cut(s)	182, 577, 1302
SfaNI	GCATC	5 cut(s)	136, 364, 857, 1089, 1251
SfcI	CTRYAG	3 cut(s)	489, 762, 918
SinI	GGWCC	2 cut(s)	167, 635
SmlI	CTYRAG	3 cut(s)	334, 774, 952
SmoI	CTYRAG	3 cut(s)	334, 774, 952
Sse8387I	CCTGCAGG	1 cut(s)	493
SseBI	AGGCCT	1 cut(s)	1404
SsiI	CCGC	5 cut(s)	54, 236, 377, 1671, 1737
SspMI	CTAG	5 cut(s)	581, 1001, 1334, 1601, 1701
StuI	AGGCCT	1 cut(s)	1404
StyD4I	CCNGG	3 cut(s)	528, 1011, 1485
StyI	CCWWGG	2 cut(s)	1136, 1333
TaaI	ACNGT	5 cut(s)	184, 281, 763, 1447, 1681
TaqI	TCGA	4 cut(s)	327, 1293, 1470, 1664
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	3 cut(s)	57, 380, 1674
TfiI	GAWTC	4 cut(s)	113, 1024, 1037, 1091
Tru1I	TTAA	7 cut(s)	204, 389, 618, 831, 971, 1676, 1758
Tru9I	TTAA	7 cut(s)	204, 389, 618, 831, 971, 1676, 1758
TscAI	CASTG	4 cut(s)	132, 187, 1039, 1047
TseFI	GTSAC	3 cut(s)	74, 123, 1154
TseI	GCWGC	5 cut(s)	51, 367, 594, 917, 1724
Tsp45I	GTSAC	3 cut(s)	74, 123, 1154
TspDTI	ATGAA	4 cut(s)	207, 323, 411, 1673
TspRI	CASTG	4 cut(s)	132, 187, 1039, 1047
VpaK11BI	GGWCC	2 cut(s)	167, 635
XapI	RAATTY	5 cut(s)	658, 701, 928, 1004, 1749
XceI	RCATGY	2 cut(s)	142, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1458
XmaJI	CCTAGG	1 cut(s)	1333
XmnI	GAANNNNTTC	1 cut(s)	1404
XspI	CTAG	5 cut(s)	581, 1001, 1334, 1601, 1701
Zsp2I	ATGCAT	1 cut(s)	1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.