Rorug05G0230000

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
23976259 .. 23977406
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0230000.1

Sequence Viewer

Length: 444 bp
ATGGCAGCAACTTCATCGTTGTCAAAGAGATCTGTTTTCAACCTCTCAAAGTTTTTGCTCAAAGAGTATCCTTCTTATTCTGTTCAATCTTTGTTATCCAGGGCGTGCTTCTCCACTTCTTATGAACGTGCCCAAGATCCAAGAAATAGGGCAGCAATTGAGACCCGAGAACACGAACGAGATGTGACCATTGATAACATGAGTGGGGTTACTGGATTTGTAGCAGATGCTGCAAGACATGGTGCCGCGAAAACAACAGAGGTGGTAGAGGACTTGATGGACTTGGCAAGAGAGACGATGGACAGTGCCTATGACAATTCCAGGAAGACTACACAAAAGGTCTCCGAGACATTAGTTGCTGAGGCTAATGAGAATGTTGTTGATACGAGTGAGTATAGAAGTATTGAGGATCTATCTAAGCTTGATTATCATGAGGATCATTAG

Protein Analysis

147

Amino Acids

16.52

Weight (kDa)

4.99

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 131, 417
AgsI TTSAA 2 cut(s) 40, 86
AjnI CCWGG 2 cut(s) 98, 320
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw26I GTCTC 4 cut(s) 155, 287, 341, 346
AlwI GGATC 2 cut(s) 131, 417
AlwNI CAGNNNCTG 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 5, 152, 230
AvaI CYCGRG 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 17, 164, 217
BccI CCATC 2 cut(s) 271, 292
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 100, 322
BciVI GTATCC 1 cut(s) 78
BcoDI GTCTC 4 cut(s) 155, 287, 341, 346
BfuI GTATCC 1 cut(s) 78
BglII AGATCT 1 cut(s) 29
BisI GCNGC 4 cut(s) 6, 153, 231, 246
BlsI GCNGC 4 cut(s) 7, 154, 232, 247
Bme1390I CCNGG 2 cut(s) 100, 322
BmeT110I CYCGRG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 100, 322
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 360
BsaI GGTCTC 2 cut(s) 155, 346
BsaJI CCNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 100, 322
BseDI CCNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 3 cut(s) 17, 164, 217
Bsh1236I CGCG 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 165
BsmAI GTCTC 4 cut(s) 155, 287, 341, 346
BsmBI CGTCTC 1 cut(s) 287
Bso31I GGTCTC 2 cut(s) 155, 346
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 4 cut(s) 29, 136, 409, 436
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 2 cut(s) 131, 417
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 155, 346
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 4 cut(s) 29, 136, 409, 436
Bst2UI CCWGG 2 cut(s) 100, 322
Bst4CI ACNGT 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 360, 417
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 4 cut(s) 32, 139, 412, 439
BstMAI GTCTC 4 cut(s) 155, 287, 341, 346
BstMBI GATC 4 cut(s) 29, 136, 409, 436
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 2 cut(s) 100, 322
BstSCI CCNGG 2 cut(s) 98, 320
BstSLI GKGCMC 1 cut(s) 133
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 17, 164, 217
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 3 cut(s) 29, 136, 409
BstYI RGATCY 3 cut(s) 29, 136, 409
BsuI GTATCC 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 199, 239, 431
CviJI RGCY 2 cut(s) 365, 421
CviKI_1 RGCY 2 cut(s) 365, 421
DdeI CTNAG 2 cut(s) 360, 417
DpnI GATC 4 cut(s) 31, 138, 411, 438
DpnII GATC 4 cut(s) 29, 136, 409, 436
Eco31I GGTCTC 2 cut(s) 155, 346
Eco88I CYCGRG 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 98, 320
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 3 cut(s) 202, 242, 434
FaiI YATR 6 cut(s) 123, 200, 240, 312, 396, 432
FatI CATG 3 cut(s) 198, 238, 430
Fnu4HI GCNGC 4 cut(s) 6, 153, 231, 246
Fsp4HI GCNGC 4 cut(s) 6, 153, 231, 246
GluI GCNGC 4 cut(s) 6, 153, 231, 246
Hin1II CATG 3 cut(s) 202, 242, 434
HindIII AAGCTT 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 360, 417
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 202, 242, 434
Kzo9I GATC 4 cut(s) 29, 136, 409, 436
LpnPI CCDG 5 cut(s) 85, 112, 198, 307, 334
Lsp1109I GCAGC 3 cut(s) 17, 164, 217
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 184, 208
MalI GATC 4 cut(s) 31, 138, 411, 438
MboI GATC 4 cut(s) 29, 136, 409, 436
MboII GAAGA 1 cut(s) 337
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 3 cut(s) 29, 136, 409
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 156, 316
MnlI CCTC 6 cut(s) 53, 253, 262, 355, 400, 427
MspR9I CCNGG 2 cut(s) 100, 322
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 2 cut(s) 100, 322
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 4 cut(s) 29, 136, 409, 436
NlaIII CATG 3 cut(s) 202, 242, 434
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 184
PagI TCATGA 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 4 cut(s) 7, 154, 232, 247
Psp6I CCWGG 2 cut(s) 98, 320
PspGI CCWGG 2 cut(s) 98, 320
PspN4I GGNNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 3 cut(s) 29, 136, 409
SatI GCNGC 4 cut(s) 6, 153, 231, 246
Sau3AI GATC 4 cut(s) 29, 136, 409, 436
ScrFI CCNGG 2 cut(s) 100, 322
SduI GDGCHC 1 cut(s) 133
SetI ASST 5 cut(s) 45, 130, 264, 342, 423
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 2 cut(s) 156, 316
SsiI CCGC 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 98, 320
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 130
TasI AATT 2 cut(s) 156, 316
TauI GCSGC 1 cut(s) 248
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 5, 152, 230
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.