FvH4_7g17370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000328
Physical Location & Seq
Forward (+)
14780374 .. 14783259
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17370.t1

Sequence Viewer

Length: 261 bp
ATGGGGGAAGTACTGGATTGGGAGAGCAAAGGGAGAATCTATCCAGCTGCGGTGTTGTTCAAAAGGGAGCAGCTGCAACTCGGTCATGATCTGATCATAAGGGAAGCCATCTGGTCCTTGTGCCACACTCGTCAATTGCTAGAAGGGGTGCAGACTTGGCTCATAATTGATTCATGCATTATGATCAGAGGTAAAGCAGAAGGTGTTGTTAGCATGGAGAGTACAACGACCAAAGACTCAGATTACTCTTTTGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.83

Weight (kDa)

5.04

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AfaI GTAC 2 cut(s) 12, 223
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 47, 73
AluI AGCT 2 cut(s) 47, 73
ApeKI GCWGC 3 cut(s) 47, 70, 73
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 34, 60, 82
BccI CCATC 1 cut(s) 116
BclI TGATCA 2 cut(s) 93, 183
BfaI CTAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 48, 71, 74
BlsI GCNGC 3 cut(s) 49, 72, 75
BmcAI AGTACT 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 3 cut(s) 34, 60, 82
BsgI GTGCAG 1 cut(s) 170
Bsp143I GATC 3 cut(s) 88, 93, 183
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 85
BsrI ACTGG 1 cut(s) 18
BssMI GATC 3 cut(s) 88, 93, 183
BstDEI CTNAG 1 cut(s) 238
BstKTI GATC 3 cut(s) 91, 96, 186
BstMBI GATC 3 cut(s) 88, 93, 183
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 34, 60, 82
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 11, 222
CviAII CATG 3 cut(s) 86, 174, 214
CviJI RGCY 4 cut(s) 47, 73, 107, 160
CviKI_1 RGCY 4 cut(s) 47, 73, 107, 160
CviQI GTAC 2 cut(s) 11, 222
DdeI CTNAG 1 cut(s) 238
DpnI GATC 3 cut(s) 90, 95, 185
DpnII GATC 3 cut(s) 88, 93, 183
Eco47I GGWCC 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 3 cut(s) 89, 177, 217
FaiI YATR 6 cut(s) 87, 98, 164, 175, 182, 215
FatI CATG 3 cut(s) 85, 173, 213
FbaI TGATCA 2 cut(s) 93, 183
Fnu4HI GCNGC 3 cut(s) 48, 71, 74
Fsp4HI GCNGC 3 cut(s) 48, 71, 74
FspBI CTAG 1 cut(s) 140
GluI GCNGC 3 cut(s) 48, 71, 74
Hin1II CATG 3 cut(s) 89, 177, 217
HinfI GANTC 3 cut(s) 36, 170, 236
Hpy188I TCNGA 3 cut(s) 93, 188, 241
Hpy188III TCNNGA 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 137, 194
HpyCH4V TGCA 3 cut(s) 76, 151, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 238
Hsp92II CATG 3 cut(s) 89, 177, 217
Ksp22I TGATCA 2 cut(s) 93, 183
Kzo9I GATC 3 cut(s) 88, 93, 183
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 57, 97
Lsp1109I GCAGC 3 cut(s) 34, 60, 82
MaeI CTAG 1 cut(s) 140
MalI GATC 3 cut(s) 90, 95, 185
MboI GATC 3 cut(s) 88, 93, 183
MfeI CAATTG 1 cut(s) 134
MluCI AATT 2 cut(s) 134, 165
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 179
MspA1I CMGCKG 2 cut(s) 47, 73
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 3 cut(s) 88, 93, 183
NlaIII CATG 3 cut(s) 89, 177, 217
NsiI ATGCAT 1 cut(s) 179
PagI TCATGA 1 cut(s) 85
PfeI GAWTC 2 cut(s) 36, 170
PkrI GCNGC 3 cut(s) 49, 72, 75
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 114
PvuII CAGCTG 2 cut(s) 47, 73
RsaI GTAC 2 cut(s) 12, 223
RsaNI GTAC 2 cut(s) 11, 222
SatI GCNGC 3 cut(s) 48, 71, 74
Sau3AI GATC 3 cut(s) 88, 93, 183
Sau96I GGNCC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 1 cut(s) 230
SetI ASST 4 cut(s) 49, 75, 193, 205
SinI GGWCC 1 cut(s) 114
Sse9I AATT 2 cut(s) 134, 165
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 140
TaqII GACCGA 1 cut(s) 71
TasI AATT 2 cut(s) 134, 165
TatI WGTACW 2 cut(s) 10, 221
TfiI GAWTC 2 cut(s) 36, 170
TseI GCWGC 3 cut(s) 47, 70, 73
TspDTI ATGAA 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 114
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.