Rh2AG434200

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000328
Physical Location & Seq
Reverse (-)
64395894 .. 64399849
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG434200.1

Sequence Viewer

Length: 360 bp
ATGAAAGCTCAGCTAAACGATATGCTGCTCGATTTCAATGGTTCAAAGCTGCGCGCCATAGGGGTGCCTGTTTTTGAGCAGTGTGTTGATAACATAGTAGGCATTGCATATGCAATGGATCTCCTGGATTATGTTCAGAAGGAACTGGATTGGCTGCTCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCGTTAGTTTTAATGTATATGATGTGTCAATTTCATCATTGTTTTGCTTGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

119

Amino Acids

13.56

Weight (kDa)

9.17

Isoelectric Point (pI)

17.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AccII CGCG 1 cut(s) 54
AclWI GGATC 1 cut(s) 126
AcuI CTGAAG 2 cut(s) 245, 254
AgsI TTSAA 2 cut(s) 37, 45
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 8, 13, 49
AluI AGCT 3 cut(s) 8, 13, 49
AlwI GGATC 1 cut(s) 126
AoxI GGCC 2 cut(s) 265, 353
ApeKI GCWGC 3 cut(s) 25, 49, 154
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 2 cut(s) 54, 56
AsuHPI GGTGA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 12, 36, 141
BciT130I CCWGG 1 cut(s) 125
BfaI CTAG 1 cut(s) 191
BisI GCNGC 3 cut(s) 26, 50, 155
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 3 cut(s) 27, 51, 156
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 2 cut(s) 102, 120
BseBI CCWGG 1 cut(s) 125
BseMI GCAATG 2 cut(s) 102, 120
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 150
BsePI GCGCGC 1 cut(s) 52
BseXI GCAGC 3 cut(s) 12, 36, 141
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 267, 355
BshNI GGYRCC 1 cut(s) 64
BsnI GGCC 2 cut(s) 267, 355
Bsp143I GATC 1 cut(s) 118
Bsp1720I GCTNAGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 267, 355
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 102, 120
BsrI ACTGG 1 cut(s) 150
BssHII GCGCGC 1 cut(s) 52
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 2 cut(s) 54, 56
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 12, 36, 141
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 2 cut(s) 267, 355
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 2 cut(s) 54, 56
CviAII CATG 1 cut(s) 301
CviJI RGCY 7 cut(s) 8, 13, 49, 154, 190, 267, 355
CviKI_1 RGCY 7 cut(s) 8, 13, 49, 154, 190, 267, 355
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 245, 254
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 304
FatI CATG 1 cut(s) 300
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 26, 50, 155
Fsp4HI GCNGC 3 cut(s) 26, 50, 155
FspBI CTAG 1 cut(s) 191
GlaI GCGC 2 cut(s) 53, 55
GluI GCNGC 3 cut(s) 26, 50, 155
HaeIII GGCC 2 cut(s) 267, 355
HhaI GCGC 2 cut(s) 54, 56
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 2 cut(s) 52, 54
HinP1I GCGC 2 cut(s) 52, 54
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 138, 166, 234
Hpy188III TCNNGA 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 107, 113
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 2 cut(s) 52, 54
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 81, 110, 131, 137
Lsp1109I GCAGC 3 cut(s) 12, 36, 141
MaeI CTAG 1 cut(s) 191
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 4 cut(s) 217, 220, 245, 247
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 332
MnlI CCTC 3 cut(s) 180, 204, 281
MseI TTAA 5 cut(s) 201, 276, 293, 314, 358
MslI CAYNNNNRTG 2 cut(s) 62, 182
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 54
NdeI CATATG 1 cut(s) 109
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 66
PauI GCGCGC 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 3 cut(s) 27, 51, 156
PshBI ATTAAT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 118
PteI GCGCGC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 62, 182
SaqAI TTAA 5 cut(s) 201, 276, 293, 314, 358
SatI GCNGC 3 cut(s) 26, 50, 155
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 125
SetI ASST 4 cut(s) 10, 15, 51, 186
SmiMI CAYNNNNRTG 2 cut(s) 62, 182
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 332
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 30
TasI AATT 1 cut(s) 332
Tru1I TTAA 5 cut(s) 201, 276, 293, 314, 358
Tru9I TTAA 5 cut(s) 201, 276, 293, 314, 358
TscAI CASTG 1 cut(s) 86
TseI GCWGC 3 cut(s) 25, 49, 154
TspDTI ATGAA 3 cut(s) 17, 289, 326
TspRI CASTG 1 cut(s) 86
VspI ATTAAT 1 cut(s) 276
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.