Rh5DG109800

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000328
Physical Location & Seq
Forward (+)
9966762 .. 9970638
3877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG109800.1

Sequence Viewer

Length: 696 bp
ATGATGCAGTCCATGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCACCATGGAAGATAAGACCTAACATTCAAGACAAGGCTCGCCGTCGATTCAGGTTTGTTGAGTGGATGGATTGTTGCTGTTCCGGGACTGAAATTACTCTCAAGATATACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTATTAGAAACATGGCTGAGAAAGTTCCGTCTTTTCAAAATGGTGGTGCTCTCTGGTTTGCTGATCTCACAACTCTAGAGAGCATGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCACAGTCGAGCAACTCTACTTCAGGGATTCTTTGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCACAGGCATTCCATATGTCTTTGCACCTTGCATAGTGAGAGTAGAAGACAAGGGGAGGGATTATGGAAAATACATCAAATCAGGGGAGCATGTATGGTCCGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTGTTCCTTCACGGGGCTCCCACTCAGTCTTATAGCTACAGAAATGTTATGTCTCAGGGCAAAAGGCTTAAGAAACACAGTAGTTCATCTCAGAGTAGTCATTTCATCATCCCAAGTTCATGTAACTTGAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

231

Amino Acids

26.1

Weight (kDa)

9.48

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 310, 356, 538
AcuI CTGAAG 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 571
AflII CTTAAG 1 cut(s) 626
AgsI TTSAA 6 cut(s) 74, 181, 197, 263, 407, 688
AluBI AGCT 5 cut(s) 22, 216, 392, 536, 594
AluI AGCT 5 cut(s) 22, 216, 392, 536, 594
Alw21I GWGCWC 2 cut(s) 24, 277
Alw26I GTCTC 2 cut(s) 518, 615
AlwI GGATC 3 cut(s) 310, 356, 538
ApeKI GCWGC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 200, 513
AsuC2I CCSGG 1 cut(s) 130
AvaII GGWCC 2 cut(s) 200, 513
BanII GRGCYC 3 cut(s) 24, 47, 577
BbsI GAAGAC 1 cut(s) 468
Bbv12I GWGCWC 2 cut(s) 24, 277
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 518, 615
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 595
BfrI CTTAAG 1 cut(s) 626
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 200, 513
BmgT120I GGNCC 2 cut(s) 200, 513
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 532
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 117, 666
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 5 cut(s) 234, 528, 596, 626, 662
BseNI ACTGG 1 cut(s) 532
BseXI GCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 24, 277
BsiSI CCGG 2 cut(s) 17, 129
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 2 cut(s) 518, 615
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 423
Bsp1286I GDGCHC 4 cut(s) 24, 47, 277, 577
Bsp143I GATC 4 cut(s) 289, 315, 348, 530
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 5 cut(s) 235, 529, 595, 625, 661
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 3 cut(s) 310, 356, 538
BspTI CTTAAG 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 4 cut(s) 289, 315, 348, 530
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 355, 638
BstAFI CTTAAG 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 85, 311
BstDEI CTNAG 5 cut(s) 243, 537, 582, 612, 648
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 117, 666
BstKTI GATC 4 cut(s) 292, 318, 351, 533
BstMAI GTCTC 2 cut(s) 518, 615
BstMBI GATC 4 cut(s) 289, 315, 348, 530
BstMWI GCNNNNNNNGC 2 cut(s) 13, 398
BstNSI RCATGY 2 cut(s) 313, 509
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 595
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 117, 666
Cac8I GCNNGC 2 cut(s) 85, 311
Cfr13I GGNCC 2 cut(s) 200, 513
CviAII CATG 6 cut(s) 13, 51, 238, 310, 506, 678
DdeI CTNAG 5 cut(s) 243, 537, 582, 612, 648
DpnI GATC 4 cut(s) 291, 317, 350, 532
DpnII GATC 4 cut(s) 289, 315, 348, 530
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 3 cut(s) 24, 47, 577
Eco47I GGWCC 2 cut(s) 200, 513
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 3 cut(s) 24, 47, 577
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 6 cut(s) 16, 54, 241, 313, 509, 681
FaqI GGGAC 1 cut(s) 145
FatI CATG 6 cut(s) 12, 50, 237, 309, 505, 677
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 2 cut(s) 124, 653
FriOI GRGCYC 3 cut(s) 24, 47, 577
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 393
HapII CCGG 2 cut(s) 17, 129
Hin1II CATG 6 cut(s) 16, 54, 241, 313, 509, 681
HinfI GANTC 4 cut(s) 93, 159, 377, 688
HpaII CCGG 2 cut(s) 17, 129
Hpy188I TCNGA 2 cut(s) 330, 651
Hpy188III TCNNGA 4 cut(s) 74, 148, 302, 346
Hpy99I CGWCG 2 cut(s) 43, 93
HpyAV CCTTC 2 cut(s) 329, 575
HpyCH4III ACNGT 2 cut(s) 355, 638
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 5 cut(s) 7, 395, 401, 440, 447
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 398
HpyF3I CTNAG 5 cut(s) 243, 537, 582, 612, 648
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 6 cut(s) 16, 54, 241, 313, 509, 681
Kzo9I GATC 4 cut(s) 289, 315, 348, 530
LmnI GCTCC 5 cut(s) 19, 27, 389, 502, 580
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 2 cut(s) 160, 680
MalI GATC 4 cut(s) 291, 317, 350, 532
MboI GATC 4 cut(s) 289, 315, 348, 530
MboII GAAGA 2 cut(s) 67, 473
MfeI CAATTG 2 cut(s) 176, 555
MhlI GDGCHC 4 cut(s) 24, 47, 277, 577
MluCI AATT 4 cut(s) 138, 176, 324, 555
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 2 cut(s) 46, 465
MseI TTAA 2 cut(s) 627, 694
MspA1I CMGCKG 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 626
MspI CCGG 2 cut(s) 17, 129
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 2 cut(s) 176, 555
Mva1269I GAATGC 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 13, 398
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 50
NdeI CATATG 1 cut(s) 430
NdeII GATC 4 cut(s) 289, 315, 348, 530
NlaIII CATG 6 cut(s) 16, 54, 241, 313, 509, 681
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 2 cut(s) 313, 509
PaeI GCATGC 1 cut(s) 313
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 3 cut(s) 93, 377, 688
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 2 cut(s) 200, 513
PspPPI RGGWCCY 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 536
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 627, 694
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 4 cut(s) 289, 315, 348, 530
Sau96I GGNCC 2 cut(s) 200, 513
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 4 cut(s) 24, 47, 277, 577
SfcI CTRYAG 1 cut(s) 595
SinI GGWCC 2 cut(s) 200, 513
SmlI CTYRAG 2 cut(s) 146, 626
SmoI CTYRAG 2 cut(s) 146, 626
SphI GCATGC 1 cut(s) 313
Sse9I AATT 4 cut(s) 138, 176, 324, 555
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 2 cut(s) 355, 638
TaiI ACGT 1 cut(s) 550
TaqI TCGA 3 cut(s) 41, 91, 357
TasI AATT 4 cut(s) 138, 176, 324, 555
TfiI GAWTC 3 cut(s) 93, 377, 688
Tru1I TTAA 2 cut(s) 627, 694
Tru9I TTAA 2 cut(s) 627, 694
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 181, 199, 633, 652, 666
TspGWI ACGGA 3 cut(s) 171, 243, 505
Vha464I CTTAAG 1 cut(s) 626
VpaK11BI GGWCC 2 cut(s) 200, 513
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 2 cut(s) 313, 509
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.