RLG00000036718

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000328
Physical Location & Seq
Reverse (-)
83717988 .. 83719378
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036718

Sequence Viewer

Length: 669 bp
ATGGGTTTTGTGAGAGATTTTGAGAACGTGGATGAGGCATTTGGTAGTAGAGACATTCAATTGAGTTGGGTTGATGTGAGGTATGAATTGGAGTGTGTTGTTTTGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGAGTTGGCTGAGTTGAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGTTAAGGCTTTGCAAAAGGACAGTGAGTTTGTGAAATTCAAGGGGCGGTTATCAGATCCAATTCTTGTCTATGAAGTTTCAGATAAGGTTCTGGAAATGCCTTCTAACATAGCTATTGCACATGTTACCCCAACAAAGGTTCTCGAAGATATGCCTACAATTTGCTTCGACAAGGAAACAAATATAATGAACTCAGAAACCCCTGAAGCTCAAGCGTTGGAGAAGCTTGAGAAAAGAGTGAACAAGGTTGAGCAGTATTACTTTAGGAAAGGCAGTCTGCAACCAACCACTTCGAAGGAGAAAGACGGAGATAAACATTTTAATACAATTAAGAAGCAGCGACAAGATGCATCATGTAGGGACGCTGATGCTGCAAAGAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.34

Weight (kDa)

6.03

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 328
AclI AACGTT 1 cut(s) 158
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 3 cut(s) 59, 154, 322
AluBI AGCT 4 cut(s) 176, 395, 491, 508
AluI AGCT 4 cut(s) 176, 395, 491, 508
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 619, 653
ApoI RAATTY 1 cut(s) 317
ArsI GACNNNNNNTTYG 4 cut(s) 208, 240, 293, 325
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 575
BbvI GCAGC 2 cut(s) 631, 640
BccI CCATC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 620, 654
BlsI GCNGC 2 cut(s) 621, 655
BmsI GCATC 4 cut(s) 99, 619, 640, 641
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 3 cut(s) 158, 477, 530
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 3 cut(s) 37, 114, 669
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 138, 489
BseXI GCAGC 2 cut(s) 631, 640
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 575
Bsp143I GATC 2 cut(s) 133, 337
BspACI CCGC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 139, 488
BspHI TCATGA 1 cut(s) 226
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 133, 337
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 575
BstDEI CTNAG 2 cut(s) 147, 475
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 37, 114, 669
BstKTI GATC 2 cut(s) 136, 340
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 133, 337
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 631, 640
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 3 cut(s) 37, 114, 669
BtsIMutI CAGTG 1 cut(s) 310
CciI TCATGA 1 cut(s) 226
CseI GACGC 1 cut(s) 653
CviAII CATG 4 cut(s) 205, 227, 404, 636
CviJI RGCY 8 cut(s) 146, 176, 186, 241, 290, 395, 491, 508
CviKI_1 RGCY 8 cut(s) 146, 176, 186, 241, 290, 395, 491, 508
DdeI CTNAG 2 cut(s) 147, 475
DpnI GATC 2 cut(s) 135, 339
DpnII GATC 2 cut(s) 133, 337
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 634
FaeI CATG 4 cut(s) 208, 230, 407, 639
FaiI YATR 9 cut(s) 84, 206, 228, 354, 392, 405, 434, 467, 637
FaqI GGGAC 1 cut(s) 656
FatI CATG 4 cut(s) 204, 226, 403, 635
Fnu4HI GCNGC 2 cut(s) 620, 654
FokI GGATG 2 cut(s) 44, 121
Fsp4HI GCNGC 2 cut(s) 620, 654
FspBI CTAG 1 cut(s) 165
GluI GCNGC 2 cut(s) 620, 654
HgaI GACGC 1 cut(s) 653
Hin1II CATG 4 cut(s) 208, 230, 407, 639
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 3 cut(s) 337, 364, 478
Hpy188III TCNNGA 4 cut(s) 137, 227, 374, 425
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 393, 571
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 27, 158
HpyCH4V TGCA 6 cut(s) 123, 295, 401, 562, 632, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 2 cut(s) 147, 475
HpySE526I ACGT 2 cut(s) 27, 158
Hsp92II CATG 4 cut(s) 208, 230, 407, 639
Kzo9I GATC 2 cut(s) 133, 337
LpnPI CCDG 4 cut(s) 232, 266, 359, 498
Lsp1109I GCAGC 2 cut(s) 631, 640
LweI GCATC 4 cut(s) 99, 619, 640, 641
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 27, 158
MaeIII GTNAC 1 cut(s) 406
MalI GATC 2 cut(s) 135, 339
MboI GATC 2 cut(s) 133, 337
MboII GAAGA 3 cut(s) 247, 286, 440
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 337
MluCI AATT 6 cut(s) 59, 86, 317, 342, 441, 609
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 6 cut(s) 28, 72, 215, 223, 231, 654
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 285, 603, 612
MunI CAATTG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 653
NdeII GATC 2 cut(s) 133, 337
NlaIII CATG 4 cut(s) 208, 230, 407, 639
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 407
NspV TTCGAA 1 cut(s) 575
PagI TCATGA 1 cut(s) 226
PciI ACATGT 1 cut(s) 403
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 621, 655
PscI ACATGT 1 cut(s) 403
Psp1406I AACGTT 1 cut(s) 158
PsuI RGATCY 1 cut(s) 337
SaqAI TTAA 3 cut(s) 285, 603, 612
SatI GCNGC 2 cut(s) 620, 654
Sau3AI GATC 2 cut(s) 133, 337
SfaNI GCATC 4 cut(s) 99, 619, 640, 641
SfuI TTCGAA 1 cut(s) 575
SmlI CTYRAG 3 cut(s) 137, 492, 509
SmoI CTYRAG 3 cut(s) 137, 492, 509
Sse9I AATT 6 cut(s) 59, 86, 317, 342, 441, 609
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 30, 161
TaqI TCGA 4 cut(s) 272, 426, 450, 575
TasI AATT 6 cut(s) 59, 86, 317, 342, 441, 609
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 3 cut(s) 285, 603, 612
Tru9I TTAA 3 cut(s) 285, 603, 612
TscAI CASTG 1 cut(s) 310
TseI GCWGC 2 cut(s) 619, 653
TspDTI ATGAA 4 cut(s) 99, 221, 369, 485
TspGWI ACGGA 2 cut(s) 184, 603
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 407
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.