DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 373 |
| AccB1I | GGYRCC | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 120, 380 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AfaI | GTAC | 1 cut(s) | 375 |
| AgsI | TTSAA | 2 cut(s) | 149, 350 |
| AluBI | AGCT | 1 cut(s) | 428 |
| AluI | AGCT | 1 cut(s) | 428 |
| Alw21I | GWGCWC | 1 cut(s) | 18 |
| Alw26I | GTCTC | 1 cut(s) | 34 |
| AoxI | GGCC | 1 cut(s) | 386 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| Asp718I | GGTACC | 1 cut(s) | 373 |
| AspS9I | GGNCC | 1 cut(s) | 83 |
| AsuC2I | CCSGG | 1 cut(s) | 142 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| AvaII | GGWCC | 1 cut(s) | 83 |
| BanI | GGYRCC | 1 cut(s) | 373 |
| BanII | GRGCYC | 1 cut(s) | 142 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 357, 389 |
| Bbv12I | GWGCWC | 1 cut(s) | 18 |
| BceAI | ACGGC | 1 cut(s) | 401 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 29 |
| BciVI | GTATCC | 1 cut(s) | 304 |
| BcnI | CCSGG | 1 cut(s) | 142 |
| BcoDI | GTCTC | 1 cut(s) | 34 |
| BfaI | CTAG | 2 cut(s) | 24, 336 |
| BfuI | GTATCC | 1 cut(s) | 304 |
| Bme1390I | CCNGG | 1 cut(s) | 142 |
| Bme18I | GGWCC | 1 cut(s) | 83 |
| BmgT120I | GGNCC | 1 cut(s) | 83 |
| BmiI | GGNNCC | 1 cut(s) | 375 |
| BmrFI | CCNGG | 1 cut(s) | 142 |
| BmrI | ACTGGG | 1 cut(s) | 148 |
| BmsI | GCATC | 2 cut(s) | 286, 331 |
| BmuI | ACTGGG | 1 cut(s) | 148 |
| BpmI | CTGGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 1 cut(s) | 142 |
| Bse1I | ACTGG | 1 cut(s) | 154 |
| BseNI | ACTGG | 1 cut(s) | 154 |
| BseRI | GAGGAG | 2 cut(s) | 317, 320 |
| BshFI | GGCC | 1 cut(s) | 388 |
| BshNI | GGYRCC | 1 cut(s) | 373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 18 |
| BsiSI | CCGG | 1 cut(s) | 142 |
| BsmAI | GTCTC | 1 cut(s) | 34 |
| BsmBI | CGTCTC | 1 cut(s) | 34 |
| BsnI | GGCC | 1 cut(s) | 388 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 142 |
| Bsp143I | GATC | 2 cut(s) | 70, 328 |
| BspACI | CCGC | 2 cut(s) | 120, 380 |
| BspANI | GGCC | 1 cut(s) | 388 |
| BspLI | GGNNCC | 1 cut(s) | 375 |
| BspT107I | GGYRCC | 1 cut(s) | 373 |
| BsrI | ACTGG | 1 cut(s) | 154 |
| BssMI | GATC | 2 cut(s) | 70, 328 |
| BstKTI | GATC | 2 cut(s) | 73, 331 |
| BstMAI | GTCTC | 1 cut(s) | 34 |
| BstMBI | GATC | 2 cut(s) | 70, 328 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 341 |
| BstSCI | CCNGG | 1 cut(s) | 140 |
| BsuI | GTATCC | 1 cut(s) | 304 |
| BsuRI | GGCC | 1 cut(s) | 388 |
| BtsIMutI | CAGTG | 2 cut(s) | 136, 161 |
| Cfr13I | GGNCC | 1 cut(s) | 83 |
| CseI | GACGC | 1 cut(s) | 16 |
| Csp6I | GTAC | 1 cut(s) | 374 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 137, 172 |
| CviJI | RGCY | 4 cut(s) | 140, 160, 388, 428 |
| CviKI_1 | RGCY | 4 cut(s) | 140, 160, 388, 428 |
| CviQI | GTAC | 1 cut(s) | 374 |
| DpnI | GATC | 2 cut(s) | 72, 330 |
| DpnII | GATC | 2 cut(s) | 70, 328 |
| Eco24I | GRGCYC | 1 cut(s) | 142 |
| Eco47I | GGWCC | 1 cut(s) | 83 |
| EcoT38I | GRGCYC | 1 cut(s) | 142 |
| Esp3I | CGTCTC | 1 cut(s) | 34 |
| FaiI | YATR | 3 cut(s) | 279, 410, 420 |
| FriOI | GRGCYC | 1 cut(s) | 142 |
| FspBI | CTAG | 2 cut(s) | 24, 336 |
| GsuI | CTGGAG | 1 cut(s) | 44 |
| HaeIII | GGCC | 1 cut(s) | 388 |
| HapII | CCGG | 1 cut(s) | 142 |
| HgaI | GACGC | 1 cut(s) | 16 |
| HinfI | GANTC | 1 cut(s) | 66 |
| HpaII | CCGG | 1 cut(s) | 142 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy188III | TCNNGA | 4 cut(s) | 61, 110, 166, 432 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4IV | ACGT | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 2 cut(s) | 277, 299 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 341 |
| HpySE526I | ACGT | 1 cut(s) | 37 |
| KpnI | GGTACC | 1 cut(s) | 377 |
| Kzo9I | GATC | 2 cut(s) | 70, 328 |
| LmnI | GCTCC | 3 cut(s) | 21, 63, 96 |
| LpnPI | CCDG | 8 cut(s) | 32, 74, 155, 167, 222, 228, 356, 390 |
| LweI | GCATC | 2 cut(s) | 286, 331 |
| MaeI | CTAG | 2 cut(s) | 24, 336 |
| MaeII | ACGT | 1 cut(s) | 37 |
| MalI | GATC | 2 cut(s) | 72, 330 |
| MboI | GATC | 2 cut(s) | 70, 328 |
| MboII | GAAGA | 8 cut(s) | 42, 45, 125, 193, 211, 260, 268, 377 |
| MhlI | GDGCHC | 2 cut(s) | 18, 142 |
| MluCI | AATT | 3 cut(s) | 102, 213, 404 |
| MlyI | GAGTC | 1 cut(s) | 75 |
| MmeI | TCCRAC | 1 cut(s) | 110 |
| MnlI | CCTC | 4 cut(s) | 295, 298, 301, 399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 282 |
| MspA1I | CMGCKG | 1 cut(s) | 380 |
| MspI | CCGG | 1 cut(s) | 142 |
| MspR9I | CCNGG | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 341 |
| NciI | CCSGG | 1 cut(s) | 142 |
| NdeII | GATC | 2 cut(s) | 70, 328 |
| NlaIV | GGNNCC | 1 cut(s) | 375 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 1 cut(s) | 375 |
| PspPI | GGNCC | 1 cut(s) | 83 |
| RsaI | GTAC | 1 cut(s) | 375 |
| RsaNI | GTAC | 1 cut(s) | 374 |
| RseI | CAYNNNNRTG | 1 cut(s) | 282 |
| Sau3AI | GATC | 2 cut(s) | 70, 328 |
| Sau96I | GGNCC | 1 cut(s) | 83 |
| SchI | GAGTC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 1 cut(s) | 142 |
| SduI | GDGCHC | 2 cut(s) | 18, 142 |
| SetI | ASST | 6 cut(s) | 40, 85, 173, 272, 375, 430 |
| SfaNI | GCATC | 2 cut(s) | 286, 331 |
| SinI | GGWCC | 1 cut(s) | 83 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 282 |
| Sse9I | AATT | 3 cut(s) | 102, 213, 404 |
| SsiI | CCGC | 2 cut(s) | 120, 380 |
| SspMI | CTAG | 2 cut(s) | 24, 336 |
| StyD4I | CCNGG | 1 cut(s) | 140 |
| TaiI | ACGT | 1 cut(s) | 40 |
| TaqI | TCGA | 1 cut(s) | 69 |
| TasI | AATT | 3 cut(s) | 102, 213, 404 |
| TscAI | CASTG | 2 cut(s) | 136, 161 |
| TspDTI | ATGAA | 3 cut(s) | 95, 194, 435 |
| TspGWI | ACGGA | 1 cut(s) | 329 |
| TspRI | CASTG | 2 cut(s) | 136, 161 |
| VpaK11BI | GGWCC | 1 cut(s) | 83 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XspI | CTAG | 2 cut(s) | 24, 336 |